Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.46691 * 2 1 4 4 C 1.46904 * 110.99818 * 174.78979 * 3 2 1 5 5 C 1.50697 * 109.61659 * 299.21213 * 4 3 2 6 6 H 1.07998 * 119.99947 * 125.15189 * 5 4 3 7 7 C 1.37880 * 120.00025 * 305.14761 * 5 4 3 8 8 N 1.31513 * 119.99592 * 5.54647 * 7 5 4 9 9 Si 1.86802 * 120.00219 * 185.54582 * 7 5 4 10 10 H 1.48499 * 109.46964 * 89.99855 * 9 7 5 11 11 H 1.48500 * 109.47115 * 210.00084 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00112 * 9 7 5 13 13 C 1.53175 * 109.54200 * 59.43426 * 4 3 2 14 14 C 1.53100 * 109.21554 * 176.87777 * 13 4 3 15 15 O 1.42898 * 109.41516 * 302.36053 * 14 13 4 16 16 C 1.42906 * 114.09883 * 61.15578 * 15 14 13 17 17 H 1.09000 * 109.48242 * 58.83569 * 16 15 14 18 18 C 1.53004 * 109.48062 * 178.86021 * 16 15 14 19 19 C 1.52999 * 109.47089 * 294.99746 * 18 16 15 20 20 C 1.53099 * 109.41505 * 298.84384 * 16 15 14 21 21 H 1.09006 * 109.46933 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47501 * 300.00048 * 1 2 3 23 23 H 1.08996 * 109.47297 * 60.00611 * 1 2 3 24 24 H 1.08998 * 109.47501 * 239.99952 * 2 1 3 25 25 H 1.09006 * 109.47142 * 119.99402 * 2 1 3 26 26 H 1.00896 * 111.00125 * 298.74117 * 3 2 1 27 27 H 0.97009 * 119.99670 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.52557 * 56.94414 * 13 4 3 29 29 H 1.08997 * 109.52133 * 296.81393 * 13 4 3 30 30 H 1.09004 * 109.47946 * 62.34157 * 14 13 4 31 31 H 1.09002 * 109.48074 * 182.37455 * 14 13 4 32 32 H 1.09001 * 109.46881 * 54.99925 * 18 16 15 33 33 H 1.09000 * 109.47153 * 174.99848 * 18 16 15 34 34 H 1.08995 * 109.47076 * 179.97438 * 19 18 16 35 35 H 1.08999 * 109.47292 * 300.00394 * 19 18 16 36 36 H 1.09004 * 109.46911 * 60.00544 * 19 18 16 37 37 H 1.08997 * 109.51826 * 177.51951 * 20 16 15 38 38 H 1.09004 * 109.51646 * 297.69921 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4827 1.4261 0.1245 5 6 3.8981 0.7856 1.4238 6 1 4.6123 -0.0245 1.4224 7 6 3.3664 1.2339 2.6144 8 7 2.4174 2.1443 2.6092 9 14 3.9940 0.5481 4.2347 10 1 5.1288 1.3761 4.7162 11 1 2.9010 0.5737 5.2396 12 1 4.4513 -0.8508 4.0361 13 6 4.1181 0.6694 -1.0459 14 6 5.6419 0.7831 -0.9517 15 8 6.0164 2.1621 -0.9531 16 6 5.4912 2.9105 0.1452 17 1 5.8325 2.4696 1.0818 18 6 5.9781 4.3582 0.0555 19 6 7.4977 4.3969 0.2293 20 6 3.9613 2.8823 0.0950 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.7130 1.8769 -0.8259 27 1 2.0431 2.4595 3.4469 28 1 3.7782 1.1020 -1.9868 29 1 3.8277 -0.3802 -1.0016 30 1 5.9850 0.3142 -0.0294 31 1 6.0974 0.2818 -1.8057 32 1 5.7131 4.7709 -0.9180 33 1 5.5074 4.9492 0.8411 34 1 7.8446 5.4282 0.1649 35 1 7.7627 3.9841 1.2027 36 1 7.9684 3.8059 -0.5564 37 1 3.5588 3.4154 0.9563 38 1 3.6182 3.3597 -0.8229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -56.786717 kcal Electronic energy + Delta-G solvation = -17419.416258 eV Core-core repulsion = 14875.384595 eV Total energy + Delta-G solvation = -2544.031664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.84906 -35.68768 -33.24050 -32.34566 -31.07318 -28.92771 -27.57089 -25.30094 -23.40238 -22.44611 -20.99594 -20.00407 -18.94581 -15.82195 -15.47115 -15.26145 -14.65732 -14.21050 -13.65534 -13.33981 -13.24520 -13.10593 -12.86298 -12.36878 -12.24668 -11.58153 -11.27441 -11.01359 -10.98173 -10.82146 -10.66134 -10.54430 -10.37597 -10.21201 -10.11184 -9.93937 -9.48798 -9.33856 -8.72801 -8.50153 -8.25454 -6.70983 -5.79956 -3.97466 3.30982 3.39097 3.41589 4.46821 4.66539 5.28577 5.45452 5.68143 5.73502 5.82415 5.95543 6.03401 6.10275 6.19188 6.27498 6.30949 6.36092 6.38893 6.43140 6.52601 6.61231 6.65003 6.69459 6.78793 6.85609 6.90823 7.07752 7.16928 7.18260 7.42332 7.69688 7.92162 8.18200 8.32370 8.64308 8.91335 9.23106 9.68164 11.17370 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.012740 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.337565 B = 2197.213795 C = 2926.604104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 N -0.639 5.639 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.051 0.949 7 C 0.088 3.912 8 N -0.831 5.831 9 Si 0.868 3.132 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.177 4.177 14 C 0.078 3.922 15 O -0.396 6.396 16 C 0.102 3.898 17 H 0.066 0.934 18 C -0.115 4.115 19 C -0.146 4.146 20 C -0.119 4.119 21 H 0.039 0.961 22 H 0.060 0.940 23 H 0.036 0.964 24 H -0.003 1.003 25 H 0.079 0.921 26 H 0.295 0.705 27 H 0.252 0.748 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 0.480 -4.525 5.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.056 4.056 3 N -0.266 5.266 4 C 0.157 3.843 5 C -0.566 4.566 6 H 0.070 0.930 7 C -0.119 4.119 8 N -0.465 5.465 9 Si 0.696 3.304 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.216 4.216 14 C 0.001 3.999 15 O -0.316 6.316 16 C 0.044 3.956 17 H 0.084 0.916 18 C -0.152 4.152 19 C -0.203 4.203 20 C -0.157 4.157 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.015 0.985 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.734 0.779 -3.852 4.788 hybrid contribution 0.302 -0.906 0.238 0.984 sum 3.036 -0.127 -3.614 4.722 Atomic orbital electron populations 1.21741 0.97586 0.99403 1.01281 1.21590 0.92855 0.91888 0.99289 1.60669 1.12585 1.12262 1.41063 1.18535 0.83528 0.90933 0.91331 1.20773 1.26345 1.19429 0.90025 0.93044 1.24880 0.94189 0.94932 0.97925 1.70161 1.23207 1.28081 1.25073 0.87004 0.78654 0.79607 0.85105 1.20774 1.21404 1.20185 1.22950 0.97010 1.01427 1.00260 1.22293 0.94715 0.82708 1.00172 1.87688 1.73948 1.21063 1.48889 1.22075 0.94089 0.90058 0.89351 0.91642 1.21548 0.95770 0.96181 1.01740 1.21706 0.96513 1.00370 1.01740 1.22027 0.93562 0.99538 1.00613 0.94215 0.92135 0.94447 0.98503 0.90282 0.88975 0.93788 0.94336 0.92462 0.92880 0.91655 0.92232 0.91128 0.93740 0.93115 0.92391 0.89006 0.95728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 10.22 37.16 0.38 -2.23 16 2 C 0.07 1.56 5.64 -3.83 -0.02 1.54 16 3 N -0.64 -14.61 4.94 -100.88 -0.50 -15.11 16 4 C 0.25 5.69 0.33 -132.50 -0.04 5.65 16 5 C -0.53 -13.38 4.97 -34.44 -0.17 -13.55 16 6 H 0.05 1.34 6.74 -52.49 -0.35 0.98 16 7 C 0.09 2.29 5.19 -17.82 -0.09 2.20 16 8 N -0.83 -22.39 11.10 55.43 0.62 -21.78 16 9 Si 0.87 20.47 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C -0.18 -3.68 4.52 -26.59 -0.12 -3.80 16 14 C 0.08 1.55 6.61 37.21 0.25 1.80 16 15 O -0.40 -8.19 9.94 -35.23 -0.35 -8.54 16 16 C 0.10 2.12 2.42 -26.68 -0.06 2.05 16 17 H 0.07 1.49 7.38 -51.93 -0.38 1.11 16 18 C -0.11 -2.01 5.64 -26.73 -0.15 -2.16 16 19 C -0.15 -2.24 9.81 37.16 0.36 -1.88 16 20 C -0.12 -2.69 4.33 -26.52 -0.11 -2.80 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.00 -0.06 6.67 -51.93 -0.35 -0.41 16 25 H 0.08 1.89 6.94 -51.93 -0.36 1.53 16 26 H 0.29 6.39 8.77 -39.29 -0.34 6.04 16 27 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.19 6.70 -51.93 -0.35 0.84 16 30 H 0.05 1.10 6.77 -51.93 -0.35 0.75 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.91 7.82 -51.93 -0.41 0.50 16 37 H 0.09 2.31 6.70 -51.93 -0.35 1.97 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -26.50 290.75 -7.27 -33.77 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.60 Total: 5.03 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 0.21 Total: -13.21 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.12 Total: -36.89 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.35 Total: -8.54 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.50 -7.27 -33.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.018 kcal (2) G-P(sol) polarization free energy of solvation -26.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds