Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.46691 * 2 1 4 4 C 1.46904 * 110.99818 * 174.78979 * 3 2 1 5 5 C 1.50697 * 109.61659 * 299.21213 * 4 3 2 6 6 H 1.07998 * 119.99947 * 125.15189 * 5 4 3 7 7 C 1.37880 * 120.00025 * 305.14761 * 5 4 3 8 8 N 1.31513 * 119.99592 * 5.54647 * 7 5 4 9 9 Si 1.86802 * 120.00219 * 185.54582 * 7 5 4 10 10 H 1.48499 * 109.46964 * 89.99855 * 9 7 5 11 11 H 1.48500 * 109.47115 * 210.00084 * 9 7 5 12 12 H 1.48500 * 109.46867 * 330.00112 * 9 7 5 13 13 C 1.53175 * 109.54200 * 59.43426 * 4 3 2 14 14 C 1.53100 * 109.21554 * 176.87777 * 13 4 3 15 15 O 1.42898 * 109.41516 * 302.36053 * 14 13 4 16 16 C 1.42906 * 114.09883 * 61.15578 * 15 14 13 17 17 H 1.09000 * 109.48242 * 58.83569 * 16 15 14 18 18 C 1.53004 * 109.48062 * 178.86021 * 16 15 14 19 19 C 1.52999 * 109.47089 * 294.99746 * 18 16 15 20 20 C 1.53099 * 109.41505 * 298.84384 * 16 15 14 21 21 H 1.09006 * 109.46933 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47501 * 300.00048 * 1 2 3 23 23 H 1.08996 * 109.47297 * 60.00611 * 1 2 3 24 24 H 1.08998 * 109.47501 * 239.99952 * 2 1 3 25 25 H 1.09006 * 109.47142 * 119.99402 * 2 1 3 26 26 H 1.00896 * 111.00125 * 298.74117 * 3 2 1 27 27 H 0.97009 * 119.99670 * 179.97438 * 8 7 5 28 28 H 1.08995 * 109.52557 * 56.94414 * 13 4 3 29 29 H 1.08997 * 109.52133 * 296.81393 * 13 4 3 30 30 H 1.09004 * 109.47946 * 62.34157 * 14 13 4 31 31 H 1.09002 * 109.48074 * 182.37455 * 14 13 4 32 32 H 1.09001 * 109.46881 * 54.99925 * 18 16 15 33 33 H 1.09000 * 109.47153 * 174.99848 * 18 16 15 34 34 H 1.08995 * 109.47076 * 179.97438 * 19 18 16 35 35 H 1.08999 * 109.47292 * 300.00394 * 19 18 16 36 36 H 1.09004 * 109.46911 * 60.00544 * 19 18 16 37 37 H 1.08997 * 109.51826 * 177.51951 * 20 16 15 38 38 H 1.09004 * 109.51646 * 297.69921 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4827 1.4261 0.1245 5 6 3.8981 0.7856 1.4238 6 1 4.6123 -0.0245 1.4224 7 6 3.3664 1.2339 2.6144 8 7 2.4174 2.1443 2.6092 9 14 3.9940 0.5481 4.2347 10 1 5.1288 1.3761 4.7162 11 1 2.9010 0.5737 5.2396 12 1 4.4513 -0.8508 4.0361 13 6 4.1181 0.6694 -1.0459 14 6 5.6419 0.7831 -0.9517 15 8 6.0164 2.1621 -0.9531 16 6 5.4912 2.9105 0.1452 17 1 5.8325 2.4696 1.0818 18 6 5.9781 4.3582 0.0555 19 6 7.4977 4.3969 0.2293 20 6 3.9613 2.8823 0.0950 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.7130 1.8769 -0.8259 27 1 2.0431 2.4595 3.4469 28 1 3.7782 1.1020 -1.9868 29 1 3.8277 -0.3802 -1.0016 30 1 5.9850 0.3142 -0.0294 31 1 6.0974 0.2818 -1.8057 32 1 5.7131 4.7709 -0.9180 33 1 5.5074 4.9492 0.8411 34 1 7.8446 5.4282 0.1649 35 1 7.7627 3.9841 1.2027 36 1 7.9684 3.8059 -0.5564 37 1 3.5588 3.4154 0.9563 38 1 3.6182 3.3597 -0.8229 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130167.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -72.724694 kcal Electronic energy + Delta-G solvation = -17420.107381 eV Core-core repulsion = 14875.384595 eV Total energy + Delta-G solvation = -2544.722786 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55190 -37.40632 -34.74202 -34.18617 -32.86431 -30.50060 -29.20910 -27.26431 -24.95118 -24.12533 -22.58116 -21.61999 -20.80280 -17.72878 -17.10959 -16.96804 -16.46145 -16.00868 -15.30513 -15.02186 -14.90259 -14.58496 -14.43371 -14.01476 -13.80717 -13.35707 -12.85295 -12.75066 -12.59434 -12.50412 -12.34197 -12.20763 -11.96703 -11.85145 -11.75696 -11.70832 -11.22352 -11.09178 -10.57070 -10.38595 -10.06789 -8.48336 -7.79163 -6.00790 1.40090 1.45225 1.49534 2.50170 3.07499 3.34016 3.80619 4.20825 4.26977 4.34336 4.43575 4.47035 4.50109 4.55767 4.67481 4.74249 4.78988 4.88549 4.98898 5.00365 5.09574 5.13835 5.16215 5.18540 5.23698 5.38984 5.45792 5.50075 5.53510 5.64441 5.78013 5.96453 6.33843 6.58409 6.75469 7.06709 7.41686 7.66238 9.15069 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.012740 C = 0.009565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.337565 B = 2197.213795 C = 2926.604104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.077 3.923 3 N -0.655 5.655 4 C 0.237 3.763 5 C -0.526 4.526 6 H 0.040 0.960 7 C 0.052 3.948 8 N -0.853 5.853 9 Si 0.915 3.085 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.169 4.169 14 C 0.077 3.923 15 O -0.395 6.395 16 C 0.106 3.894 17 H 0.040 0.960 18 C -0.112 4.112 19 C -0.140 4.140 20 C -0.112 4.112 21 H 0.063 0.937 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.009 0.991 25 H 0.046 0.954 26 H 0.302 0.698 27 H 0.248 0.752 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 0.452 -5.563 6.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 N -0.283 5.283 4 C 0.148 3.852 5 C -0.565 4.565 6 H 0.058 0.942 7 C -0.153 4.153 8 N -0.488 5.488 9 Si 0.742 3.258 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.202 1.202 13 C -0.209 4.209 14 C 0.000 4.000 15 O -0.314 6.314 16 C 0.048 3.952 17 H 0.058 0.942 18 C -0.150 4.150 19 C -0.197 4.197 20 C -0.150 4.150 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.027 0.973 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.280 0.742 -4.893 5.937 hybrid contribution 0.129 -0.933 0.531 1.081 sum 3.410 -0.191 -4.362 5.540 Atomic orbital electron populations 1.21636 0.95341 1.00939 1.01047 1.21523 0.94689 0.90861 0.98166 1.60586 1.12587 1.13393 1.41698 1.18574 0.84049 0.91309 0.91286 1.20918 1.25544 1.18757 0.91290 0.94213 1.25334 0.94516 0.95371 1.00049 1.70268 1.24200 1.29151 1.25132 0.86274 0.78009 0.78957 0.82533 1.20631 1.21685 1.20227 1.22829 0.97633 1.00969 0.99485 1.22393 0.94174 0.82514 1.00967 1.87700 1.73803 1.21405 1.48525 1.21996 0.92870 0.91924 0.88415 0.94221 1.21539 0.97397 0.93777 1.02273 1.21658 0.94643 1.02064 1.01383 1.21913 0.94853 0.98922 0.99344 0.91822 0.94202 0.92737 0.97315 0.93512 0.88184 0.94275 0.93531 0.92561 0.94240 0.88413 0.91380 0.91045 0.91074 0.93521 0.92649 0.91886 0.95320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 10.22 71.98 0.74 -3.91 16 2 C 0.08 3.22 5.64 86.30 0.49 3.71 16 3 N -0.65 -29.75 4.94 -473.08 -2.34 -32.09 16 4 C 0.24 10.93 0.33 2.94 0.00 10.93 16 5 C -0.53 -26.96 4.97 25.60 0.13 -26.83 16 6 H 0.04 2.09 6.74 -2.91 -0.02 2.07 16 7 C 0.05 2.74 5.19 84.66 0.44 3.18 16 8 N -0.85 -46.63 11.10 21.45 0.24 -46.39 16 9 Si 0.91 42.50 29.54 68.60 2.03 44.53 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C -0.17 -6.84 4.52 30.69 0.14 -6.70 16 14 C 0.08 2.91 6.61 72.02 0.48 3.39 16 15 O -0.39 -15.68 9.94 -148.98 -1.48 -17.16 16 16 C 0.11 4.34 2.42 30.63 0.07 4.41 16 17 H 0.04 1.83 7.38 -2.39 -0.02 1.81 16 18 C -0.11 -3.78 5.64 30.60 0.17 -3.61 16 19 C -0.14 -4.02 9.81 71.98 0.71 -3.31 16 20 C -0.11 -5.04 4.33 30.73 0.13 -4.90 16 21 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.01 0.35 6.67 -2.39 -0.02 0.33 16 25 H 0.05 2.24 6.94 -2.38 -0.02 2.22 16 26 H 0.30 12.84 8.77 -89.70 -0.79 12.05 16 27 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 2.26 6.70 -2.39 -0.02 2.25 16 30 H 0.04 1.60 6.77 -2.39 -0.02 1.59 16 31 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.61 7.82 -2.39 -0.02 1.59 16 37 H 0.06 3.22 6.70 -2.39 -0.02 3.20 16 38 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -55.73 290.75 2.17 -53.56 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.23 Total: 21.20 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 3.49 Total: -23.65 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.10 Total: -78.48 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.48 Total: -17.16 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -55.73 2.17 -53.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130167.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.167 kcal (2) G-P(sol) polarization free energy of solvation -55.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds