Wall clock time and date at job start Mon Mar 30 2020 03:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 H 1.08999 * 109.47923 * 304.97741 * 3 2 1 5 5 C 1.53098 * 109.47742 * 184.94158 * 3 2 1 6 6 C 1.53185 * 109.16092 * 182.40359 * 5 3 2 7 7 C 1.50700 * 109.61868 * 297.07334 * 6 5 3 8 8 H 1.07991 * 119.99971 * 114.58768 * 7 6 5 9 9 C 1.37875 * 119.99435 * 294.58626 * 7 6 5 10 10 N 1.31506 * 120.00777 * 354.01514 * 9 7 6 11 11 Si 1.86801 * 119.99399 * 174.01808 * 9 7 6 12 12 H 1.48498 * 109.47373 * 89.99736 * 11 9 7 13 13 H 1.48501 * 109.46996 * 209.99865 * 11 9 7 14 14 H 1.48500 * 109.47234 * 329.99684 * 11 9 7 15 15 N 1.46904 * 109.53911 * 176.84791 * 6 5 3 16 16 C 1.46897 * 110.99755 * 179.69954 * 15 6 5 17 17 C 1.46896 * 111.00051 * 303.64944 * 15 6 5 18 18 C 1.53180 * 109.03056 * 56.98604 * 6 5 3 19 19 C 1.53091 * 109.16257 * 303.01231 * 18 6 5 20 20 O 1.42898 * 109.41327 * 57.61633 * 19 18 6 21 21 H 1.09000 * 109.47579 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47004 * 300.00162 * 1 2 3 23 23 H 1.09000 * 109.47316 * 59.99485 * 1 2 3 24 24 H 1.08993 * 109.47108 * 239.99471 * 2 1 3 25 25 H 1.09003 * 109.46818 * 119.99716 * 2 1 3 26 26 H 1.09001 * 109.51770 * 62.50713 * 5 3 2 27 27 H 1.08996 * 109.52295 * 302.31138 * 5 3 2 28 28 H 0.97001 * 120.00414 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.47602 * 184.79409 * 16 15 6 30 30 H 1.09005 * 109.47012 * 304.79064 * 16 15 6 31 31 H 1.09001 * 109.47416 * 64.78705 * 16 15 6 32 32 H 1.08991 * 109.47622 * 300.00250 * 17 15 6 33 33 H 1.09000 * 109.47237 * 60.00524 * 17 15 6 34 34 H 1.09001 * 109.47023 * 179.97438 * 17 15 6 35 35 H 1.08996 * 109.52266 * 62.92460 * 18 6 5 36 36 H 1.09007 * 109.51848 * 183.04818 * 18 6 5 37 37 H 1.09003 * 109.47912 * 177.59971 * 19 18 6 38 38 H 1.08998 * 109.48142 * 297.62043 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9815 -0.8420 5 6 3.5659 1.4444 -0.1243 6 6 4.0735 2.8884 -0.0632 7 6 3.5313 3.6654 -1.2351 8 1 2.8434 4.4814 -1.0702 9 6 3.9137 3.3344 -2.5178 10 7 4.8391 2.4208 -2.7131 11 14 3.1170 4.1839 -3.9783 12 1 3.8931 5.4009 -4.3270 13 1 3.0989 3.2586 -5.1397 14 1 1.7254 4.5674 -3.6293 15 7 5.5419 2.8953 -0.1059 16 6 6.0635 4.2676 -0.0561 17 6 6.1039 2.0789 0.9783 18 6 3.5958 3.5309 1.2428 19 6 2.0688 3.4484 1.3143 20 8 1.6621 2.0816 1.2210 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8544 0.9970 -1.0755 27 1 3.9989 0.8711 0.6953 28 1 5.1084 2.1882 -3.6155 29 1 7.1469 4.2492 -0.1748 30 1 5.6199 4.8543 -0.8606 31 1 5.8107 4.7179 0.9038 32 1 5.7804 2.4786 1.9393 33 1 5.7562 1.0509 0.8767 34 1 7.1923 2.1010 0.9230 35 1 4.0295 2.9997 2.0900 36 1 3.9067 4.5753 1.2699 37 1 1.7261 3.8658 2.2611 38 1 1.6352 4.0139 0.4896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261145268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:11 Heat of formation + Delta-G solvation = -40.892013 kcal Electronic energy + Delta-G solvation = -17723.400895 eV Core-core repulsion = 15180.058477 eV Total energy + Delta-G solvation = -2543.342417 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.07063 -36.10468 -33.24948 -32.33557 -30.49516 -28.98930 -26.77186 -25.34976 -23.70347 -22.58966 -21.89766 -20.08139 -18.46330 -15.84487 -15.53635 -15.29609 -14.62895 -13.87056 -13.67412 -13.57557 -13.38668 -12.93899 -12.79005 -12.51325 -12.05623 -11.64401 -11.29782 -11.19671 -10.94168 -10.72970 -10.63573 -10.57629 -10.47207 -10.36621 -10.01852 -9.90017 -9.48542 -9.34285 -8.74178 -8.48729 -8.26459 -6.64772 -5.82531 -4.00529 3.30168 3.38592 3.41451 4.45191 4.66564 5.18825 5.44700 5.67880 5.71004 5.81594 5.94005 6.08062 6.17500 6.24371 6.27902 6.34310 6.36335 6.41812 6.46649 6.56017 6.58565 6.61036 6.65978 6.79123 6.82581 6.85913 6.97402 7.14868 7.18529 7.37242 7.68085 7.90619 8.15845 8.29845 8.59962 8.76827 9.11531 9.65086 11.14592 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.014325 C = 0.010526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.496453 B = 1954.158449 C = 2659.482485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.101 3.899 4 H 0.066 0.934 5 C -0.121 4.121 6 C 0.245 3.755 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.087 3.913 10 N -0.833 5.833 11 Si 0.870 3.130 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.275 1.275 15 N -0.492 5.492 16 C 0.049 3.951 17 C 0.021 3.979 18 C -0.178 4.178 19 C 0.079 3.921 20 O -0.396 6.396 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.254 0.746 29 H 0.034 0.966 30 H 0.075 0.925 31 H -0.004 1.004 32 H 0.003 0.997 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 -1.415 4.811 5.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.043 3.957 4 H 0.084 0.916 5 C -0.159 4.159 6 C 0.157 3.843 7 C -0.567 4.567 8 H 0.072 0.928 9 C -0.120 4.120 10 N -0.467 5.467 11 Si 0.698 3.302 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.200 1.200 15 N -0.213 5.213 16 C -0.100 4.100 17 C -0.128 4.128 18 C -0.218 4.218 19 C 0.002 3.998 20 O -0.316 6.316 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.014 0.986 32 H 0.021 0.979 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.814 -1.847 4.344 5.496 hybrid contribution -0.318 1.054 -0.258 1.131 sum -3.132 -0.792 4.086 5.209 Atomic orbital electron populations 1.21707 0.96304 1.00353 1.01961 1.21545 0.95623 0.96299 1.01767 1.22089 0.95501 0.91616 0.86459 0.91628 1.22114 0.93319 0.98801 1.01715 1.18642 0.83556 0.91929 0.90195 1.20795 1.28265 1.17544 0.90090 0.92795 1.24898 0.94135 0.94845 0.98141 1.70158 1.26595 1.29777 1.20145 0.86968 0.80133 0.79695 0.83399 1.20859 1.21255 1.20037 1.62321 1.08514 1.09570 1.40899 1.22037 0.97560 0.91676 0.98733 1.22419 0.98485 0.99145 0.92782 1.22847 0.96692 1.00999 1.01217 1.22285 0.94514 0.83213 0.99805 1.87687 1.79088 1.24874 1.39903 0.93738 0.92384 0.93102 0.91127 0.92244 0.89109 0.95138 0.93625 0.94679 0.90610 0.98600 0.97865 0.92319 0.93879 0.93748 0.92449 0.91612 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.81 37.16 0.36 -1.87 16 2 C -0.11 -2.01 5.64 -26.73 -0.15 -2.16 16 3 C 0.10 2.10 2.42 -26.68 -0.06 2.04 16 4 H 0.07 1.50 7.38 -51.93 -0.38 1.11 16 5 C -0.12 -2.76 3.82 -26.58 -0.10 -2.86 16 6 C 0.24 5.72 0.07 -132.56 -0.01 5.71 16 7 C -0.53 -13.41 4.92 -34.44 -0.17 -13.58 16 8 H 0.05 1.39 6.74 -52.49 -0.35 1.04 16 9 C 0.09 2.26 5.13 -17.82 -0.09 2.17 16 10 N -0.83 -22.47 11.11 55.43 0.62 -21.86 16 11 Si 0.87 20.31 29.54 -169.99 -5.02 15.29 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 N -0.49 -11.53 3.69 -236.54 -0.87 -12.40 16 16 C 0.05 1.07 8.87 60.06 0.53 1.60 16 17 C 0.02 0.42 8.81 60.06 0.53 0.95 16 18 C -0.18 -3.77 4.17 -26.59 -0.11 -3.88 16 19 C 0.08 1.58 6.61 37.20 0.25 1.82 16 20 O -0.40 -8.21 9.94 -35.23 -0.35 -8.56 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.91 7.82 -51.93 -0.41 0.50 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 2.30 6.71 -51.93 -0.35 1.95 16 27 H 0.03 0.67 6.19 -51.93 -0.32 0.35 16 28 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.80 6.87 -51.93 -0.36 1.45 16 31 H 0.00 -0.09 6.66 -51.93 -0.35 -0.43 16 32 H 0.00 0.06 6.33 -51.93 -0.33 -0.27 16 33 H 0.06 1.21 6.18 -51.93 -0.32 0.89 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.93 6.34 -51.93 -0.33 0.60 16 36 H 0.06 1.21 6.72 -51.93 -0.35 0.86 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.10 6.77 -51.93 -0.35 0.75 16 LS Contribution 281.90 15.07 4.25 4.25 Total: -1.00 -26.83 281.90 -6.69 -33.53 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.29 Total: -0.18 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 0.97 Total: -10.06 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.26 Total: -34.26 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.35 Total: -8.56 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.83 -6.69 -33.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.364 kcal (2) G-P(sol) polarization free energy of solvation -26.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds