Wall clock time and date at job start Mon Mar 30 2020 03:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47067 * 2 1 4 4 H 1.08999 * 109.47923 * 304.97741 * 3 2 1 5 5 C 1.53098 * 109.47742 * 184.94158 * 3 2 1 6 6 C 1.53185 * 109.16092 * 182.40359 * 5 3 2 7 7 C 1.50700 * 109.61868 * 297.07334 * 6 5 3 8 8 H 1.07991 * 119.99971 * 114.58768 * 7 6 5 9 9 C 1.37875 * 119.99435 * 294.58626 * 7 6 5 10 10 N 1.31506 * 120.00777 * 354.01514 * 9 7 6 11 11 Si 1.86801 * 119.99399 * 174.01808 * 9 7 6 12 12 H 1.48498 * 109.47373 * 89.99736 * 11 9 7 13 13 H 1.48501 * 109.46996 * 209.99865 * 11 9 7 14 14 H 1.48500 * 109.47234 * 329.99684 * 11 9 7 15 15 N 1.46904 * 109.53911 * 176.84791 * 6 5 3 16 16 C 1.46897 * 110.99755 * 179.69954 * 15 6 5 17 17 C 1.46896 * 111.00051 * 303.64944 * 15 6 5 18 18 C 1.53180 * 109.03056 * 56.98604 * 6 5 3 19 19 C 1.53091 * 109.16257 * 303.01231 * 18 6 5 20 20 O 1.42898 * 109.41327 * 57.61633 * 19 18 6 21 21 H 1.09000 * 109.47579 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47004 * 300.00162 * 1 2 3 23 23 H 1.09000 * 109.47316 * 59.99485 * 1 2 3 24 24 H 1.08993 * 109.47108 * 239.99471 * 2 1 3 25 25 H 1.09003 * 109.46818 * 119.99716 * 2 1 3 26 26 H 1.09001 * 109.51770 * 62.50713 * 5 3 2 27 27 H 1.08996 * 109.52295 * 302.31138 * 5 3 2 28 28 H 0.97001 * 120.00414 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.47602 * 184.79409 * 16 15 6 30 30 H 1.09005 * 109.47012 * 304.79064 * 16 15 6 31 31 H 1.09001 * 109.47416 * 64.78705 * 16 15 6 32 32 H 1.08991 * 109.47622 * 300.00250 * 17 15 6 33 33 H 1.09000 * 109.47237 * 60.00524 * 17 15 6 34 34 H 1.09001 * 109.47023 * 179.97438 * 17 15 6 35 35 H 1.08996 * 109.52266 * 62.92460 * 18 6 5 36 36 H 1.09007 * 109.51848 * 183.04818 * 18 6 5 37 37 H 1.09003 * 109.47912 * 177.59971 * 19 18 6 38 38 H 1.08998 * 109.48142 * 297.62043 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9815 -0.8420 5 6 3.5659 1.4444 -0.1243 6 6 4.0735 2.8884 -0.0632 7 6 3.5313 3.6654 -1.2351 8 1 2.8434 4.4814 -1.0702 9 6 3.9137 3.3344 -2.5178 10 7 4.8391 2.4208 -2.7131 11 14 3.1170 4.1839 -3.9783 12 1 3.8931 5.4009 -4.3270 13 1 3.0989 3.2586 -5.1397 14 1 1.7254 4.5674 -3.6293 15 7 5.5419 2.8953 -0.1059 16 6 6.0635 4.2676 -0.0561 17 6 6.1039 2.0789 0.9783 18 6 3.5958 3.5309 1.2428 19 6 2.0688 3.4484 1.3143 20 8 1.6621 2.0816 1.2210 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8544 0.9970 -1.0755 27 1 3.9989 0.8711 0.6953 28 1 5.1084 2.1882 -3.6155 29 1 7.1469 4.2492 -0.1748 30 1 5.6199 4.8543 -0.8606 31 1 5.8107 4.7179 0.9038 32 1 5.7804 2.4786 1.9393 33 1 5.7562 1.0509 0.8767 34 1 7.1923 2.1010 0.9230 35 1 4.0295 2.9997 2.0900 36 1 3.9067 4.5753 1.2699 37 1 1.7261 3.8658 2.2611 38 1 1.6352 4.0139 0.4896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:10 Heat of formation + Delta-G solvation = -56.785866 kcal Electronic energy + Delta-G solvation = -17724.090104 eV Core-core repulsion = 15180.058477 eV Total energy + Delta-G solvation = -2544.031627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78503 -37.80956 -34.74602 -34.25337 -32.27272 -30.56273 -28.53527 -27.11617 -25.46823 -24.23664 -23.50319 -21.67309 -20.31903 -17.70046 -17.17655 -16.98616 -16.53015 -15.54998 -15.43799 -15.29321 -14.98683 -14.46460 -14.35316 -14.14582 -13.72603 -13.35858 -12.89522 -12.83475 -12.78373 -12.48948 -12.32676 -12.23737 -12.12868 -11.88300 -11.76941 -11.61816 -11.23392 -11.08114 -10.57519 -10.37084 -10.07156 -8.41328 -7.79841 -6.02504 1.41748 1.47138 1.52477 2.50715 3.07381 3.29243 3.72256 4.18375 4.26304 4.30848 4.43523 4.46697 4.52384 4.59843 4.68114 4.70898 4.77630 4.82522 4.92819 4.99436 5.01784 5.08217 5.16264 5.17111 5.21396 5.26697 5.35752 5.43216 5.50530 5.60202 5.77039 5.95596 6.32180 6.58069 6.71370 6.97398 7.24324 7.64808 9.14263 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.014325 C = 0.010526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.496453 B = 1954.158449 C = 2659.482485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C 0.105 3.895 4 H 0.041 0.959 5 C -0.113 4.113 6 C 0.236 3.764 7 C -0.529 4.529 8 H 0.044 0.956 9 C 0.052 3.948 10 N -0.856 5.856 11 Si 0.919 3.081 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.275 1.275 15 N -0.519 5.519 16 C 0.056 3.944 17 C 0.026 3.974 18 C -0.171 4.171 19 C 0.078 3.922 20 O -0.395 6.395 21 H 0.070 0.930 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.250 0.750 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.009 0.991 32 H 0.013 0.987 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -1.592 5.804 7.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C 0.047 3.953 4 H 0.059 0.941 5 C -0.151 4.151 6 C 0.149 3.851 7 C -0.567 4.567 8 H 0.062 0.938 9 C -0.153 4.153 10 N -0.491 5.491 11 Si 0.746 3.254 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.199 1.199 15 N -0.241 5.241 16 C -0.092 4.092 17 C -0.122 4.122 18 C -0.211 4.211 19 C 0.000 4.000 20 O -0.314 6.314 21 H 0.089 0.911 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.415 -2.015 5.343 6.653 hybrid contribution -0.109 1.133 -0.537 1.259 sum -3.524 -0.881 4.806 6.024 Atomic orbital electron populations 1.21658 0.94402 1.02036 1.01643 1.21536 0.97298 0.93938 1.02209 1.22018 0.94128 0.93368 0.85808 0.94106 1.21989 0.94743 0.98319 1.00090 1.18672 0.83851 0.92077 0.90544 1.20955 1.27642 1.17079 0.91067 0.93792 1.25360 0.94597 0.95441 0.99933 1.70267 1.27757 1.30992 1.20082 0.86209 0.79332 0.78697 0.81163 1.20993 1.21366 1.19949 1.62205 1.08681 1.10508 1.42687 1.21923 0.97993 0.90920 0.98399 1.22371 0.99195 0.98335 0.92334 1.22744 0.97569 1.00697 1.00068 1.22384 0.93644 0.82876 1.01048 1.87699 1.78963 1.25229 1.39543 0.91082 0.92670 0.93432 0.91008 0.91461 0.92052 0.94817 0.94076 0.93475 0.93141 0.97256 0.96831 0.92846 0.92482 0.93263 0.92510 0.88378 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.81 71.98 0.71 -3.29 16 2 C -0.11 -3.77 5.64 30.59 0.17 -3.60 16 3 C 0.10 4.29 2.42 30.63 0.07 4.36 16 4 H 0.04 1.87 7.38 -2.39 -0.02 1.85 16 5 C -0.11 -5.11 3.82 30.69 0.12 -4.99 16 6 C 0.24 10.95 0.07 2.90 0.00 10.95 16 7 C -0.53 -26.93 4.92 25.60 0.13 -26.81 16 8 H 0.04 2.28 6.74 -2.92 -0.02 2.26 16 9 C 0.05 2.69 5.13 84.66 0.43 3.12 16 10 N -0.86 -46.71 11.11 21.45 0.24 -46.47 16 11 Si 0.92 42.07 29.54 68.60 2.03 44.10 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 N -0.52 -23.98 3.69 -902.28 -3.32 -27.31 16 16 C 0.06 2.42 8.87 127.69 1.13 3.55 16 17 C 0.03 1.04 8.81 127.69 1.12 2.16 16 18 C -0.17 -6.99 4.17 30.68 0.13 -6.87 16 19 C 0.08 2.95 6.61 72.01 0.48 3.43 16 20 O -0.39 -15.72 9.94 -148.98 -1.48 -17.20 16 21 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 1.60 7.82 -2.39 -0.02 1.58 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 3.15 6.71 -2.39 -0.02 3.13 16 27 H 0.03 1.47 6.19 -2.39 -0.01 1.45 16 28 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 2.40 6.87 -2.38 -0.02 2.38 16 31 H 0.01 0.37 6.66 -2.39 -0.02 0.35 16 32 H 0.01 0.50 6.33 -2.39 -0.02 0.49 16 33 H 0.05 2.14 6.18 -2.39 -0.01 2.13 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.95 6.34 -2.39 -0.02 1.93 16 36 H 0.06 2.30 6.72 -2.38 -0.02 2.28 16 37 H 0.10 3.10 8.14 -2.39 -0.02 3.09 16 38 H 0.04 1.66 6.77 -2.39 -0.02 1.64 16 Total: -1.00 -55.77 281.90 2.97 -52.80 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.02 Total: 12.06 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.49 Total: -17.98 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -3.09 Total: -73.78 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -1.48 Total: -17.20 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -55.77 2.97 -52.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.989 kcal (2) G-P(sol) polarization free energy of solvation -55.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds