Wall clock time and date at job start Mon Mar 30 2020 03:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47042 * 2 1 4 4 H 1.09000 * 109.47823 * 305.02520 * 3 2 1 5 5 C 1.53098 * 109.48121 * 184.99903 * 3 2 1 6 6 C 1.53172 * 109.15953 * 182.40883 * 5 3 2 7 7 C 1.50701 * 109.54090 * 176.84944 * 6 5 3 8 8 H 1.08000 * 120.00152 * 6.06047 * 7 6 5 9 9 C 1.37877 * 120.00459 * 185.78848 * 7 6 5 10 10 N 1.31522 * 119.99759 * 27.39809 * 9 7 6 11 11 Si 1.86797 * 120.00308 * 207.40590 * 9 7 6 12 12 H 1.48508 * 109.47237 * 89.99870 * 11 9 7 13 13 H 1.48501 * 109.47363 * 209.99168 * 11 9 7 14 14 H 1.48497 * 109.47201 * 329.99691 * 11 9 7 15 15 N 1.46897 * 109.54923 * 297.02437 * 6 5 3 16 16 C 1.46901 * 111.00316 * 172.38765 * 15 6 5 17 17 C 1.46902 * 110.99925 * 296.34337 * 15 6 5 18 18 C 1.53182 * 109.11243 * 56.93936 * 6 5 3 19 19 C 1.53102 * 109.15496 * 303.14944 * 18 6 5 20 20 O 1.42904 * 109.48798 * 57.47509 * 19 18 6 21 21 H 1.08995 * 109.46918 * 299.99738 * 1 2 3 22 22 H 1.08996 * 109.47315 * 59.99764 * 1 2 3 23 23 H 1.09002 * 109.46678 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47306 * 240.00518 * 2 1 3 25 25 H 1.08996 * 109.47315 * 120.00235 * 2 1 3 26 26 H 1.08996 * 109.52093 * 62.50703 * 5 3 2 27 27 H 1.08997 * 109.57144 * 302.34828 * 5 3 2 28 28 H 0.97002 * 119.99761 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.46734 * 65.22011 * 16 15 6 30 30 H 1.09000 * 109.47034 * 185.21969 * 16 15 6 31 31 H 1.08998 * 109.46884 * 305.21767 * 16 15 6 32 32 H 1.08998 * 109.47179 * 60.00166 * 17 15 6 33 33 H 1.09001 * 109.46941 * 179.97438 * 17 15 6 34 34 H 1.08996 * 109.47278 * 299.99395 * 17 15 6 35 35 H 1.09007 * 109.51650 * 62.96815 * 18 6 5 36 36 H 1.08997 * 109.52295 * 183.15541 * 18 6 5 37 37 H 1.09001 * 109.40696 * 297.48986 * 19 18 6 38 38 H 1.09000 * 109.47914 * 177.50146 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4447 -0.1258 6 6 4.0732 2.8886 -0.0645 7 6 5.5796 2.8958 -0.1098 8 1 6.1193 1.9749 -0.2740 9 6 6.2686 4.0790 0.0528 10 7 5.7377 5.0583 0.7520 11 14 7.9558 4.2911 -0.7201 12 1 7.8073 4.8538 -2.0864 13 1 8.7680 5.2162 0.1105 14 1 8.6336 2.9722 -0.7989 15 7 3.5437 3.6446 -1.2072 16 6 3.8605 5.0739 -1.0852 17 6 4.0454 3.1007 -2.4763 18 6 3.5968 3.5327 1.2411 19 6 2.0699 3.4479 1.3151 20 8 1.6632 2.0812 1.2217 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.8534 0.9976 -1.0773 27 1 4.0004 0.8707 0.6926 28 1 6.2223 5.8908 0.8661 29 1 4.9400 5.2130 -1.1438 30 1 3.3788 5.6231 -1.8942 31 1 3.4976 5.4459 -0.1271 32 1 3.7367 2.0597 -2.5727 33 1 3.6376 3.6785 -3.3057 34 1 5.1336 3.1600 -2.4921 35 1 4.0313 3.0024 2.0886 36 1 3.9066 4.5774 1.2662 37 1 1.6354 4.0137 0.4909 38 1 1.7282 3.8649 2.2624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145270.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:12 Heat of formation + Delta-G solvation = -46.640642 kcal Electronic energy + Delta-G solvation = -17771.795442 eV Core-core repulsion = 15228.203746 eV Total energy + Delta-G solvation = -2543.591697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79624 -37.90484 -34.74892 -34.13090 -32.47673 -30.75028 -28.15153 -27.55843 -25.22156 -24.09072 -23.40380 -21.88644 -19.84955 -18.25787 -17.09067 -16.86052 -16.51693 -15.82513 -15.72633 -15.42139 -14.90722 -14.50030 -14.27314 -13.77295 -13.62176 -13.08531 -13.02360 -12.93013 -12.60270 -12.59990 -12.42724 -12.27970 -11.97345 -11.83653 -11.76492 -11.55661 -11.45680 -10.87775 -10.66846 -10.31576 -10.09865 -8.65137 -8.02254 -6.16600 1.31105 1.38057 1.43356 2.36174 2.98633 3.14232 3.74523 4.04983 4.27445 4.43422 4.51691 4.59404 4.65283 4.70443 4.74994 4.86558 4.89163 4.92728 4.96132 5.04089 5.14149 5.16700 5.23128 5.30306 5.35324 5.39383 5.50323 5.57947 5.59317 5.74285 5.80358 6.04841 6.35095 6.63267 6.67947 6.85309 6.88844 7.43717 8.78290 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038165 B = 0.009704 C = 0.009309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.481063 B = 2884.600539 C = 3007.022416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 C 0.102 3.898 4 H 0.056 0.944 5 C -0.120 4.120 6 C 0.219 3.781 7 C -0.563 4.563 8 H 0.037 0.963 9 C 0.056 3.944 10 N -0.868 5.868 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.279 1.279 15 N -0.536 5.536 16 C 0.043 3.957 17 C 0.037 3.963 18 C -0.134 4.134 19 C 0.070 3.930 20 O -0.401 6.401 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.010 0.990 35 H 0.016 0.984 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -3.861 -3.161 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.152 4.152 3 C 0.044 3.956 4 H 0.074 0.926 5 C -0.158 4.158 6 C 0.132 3.868 7 C -0.602 4.602 8 H 0.056 0.944 9 C -0.147 4.147 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.204 1.204 15 N -0.260 5.260 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.172 4.172 19 C -0.007 4.007 20 O -0.321 6.321 21 H 0.067 0.933 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.128 0.872 37 H 0.065 0.935 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.466 -3.823 -2.935 8.886 hybrid contribution 2.499 0.552 -0.378 2.587 sum -4.967 -3.272 -3.313 6.808 Atomic orbital electron populations 1.21648 0.94412 1.01972 1.01724 1.21591 0.97332 0.93822 1.02484 1.22059 0.93189 0.93744 0.86559 0.92575 1.22099 0.95991 0.97583 1.00118 1.18643 0.90699 0.89589 0.87906 1.21656 0.93509 0.93569 1.51487 0.94430 1.25256 0.99497 0.96190 0.93750 1.70144 1.39389 1.06417 1.34590 0.86213 0.82201 0.77723 0.79428 1.20244 1.21048 1.20396 1.62674 1.57747 1.02831 1.02713 1.22465 0.99365 0.89217 0.99478 1.22108 0.97491 0.99649 0.91913 1.22498 0.93250 1.04971 0.96478 1.22600 0.95426 0.82260 1.00391 1.87713 1.78928 1.25704 1.39707 0.93348 0.92661 0.91254 0.89764 0.92226 0.92199 0.94202 0.92713 0.95356 0.94807 0.92234 0.92046 0.92409 0.97134 0.96483 0.87229 0.93519 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.81 71.98 0.71 -2.81 16 2 C -0.11 -3.38 5.64 30.60 0.17 -3.20 16 3 C 0.10 3.76 2.48 30.63 0.08 3.84 16 4 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 5 C -0.12 -5.03 3.96 30.68 0.12 -4.91 16 6 C 0.22 10.28 0.26 2.90 0.00 10.28 16 7 C -0.56 -29.54 6.41 25.60 0.16 -29.38 16 8 H 0.04 2.06 7.89 -2.91 -0.02 2.04 16 9 C 0.06 2.89 3.32 84.65 0.28 3.17 16 10 N -0.87 -44.82 8.19 21.45 0.18 -44.64 16 11 Si 0.92 41.75 29.61 68.60 2.03 43.78 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 N -0.54 -23.36 3.63 -902.29 -3.27 -26.64 16 16 C 0.04 1.93 7.84 127.69 1.00 2.94 16 17 C 0.04 1.49 8.96 127.69 1.14 2.63 16 18 C -0.13 -6.34 3.88 30.69 0.12 -6.22 16 19 C 0.07 2.84 6.67 72.02 0.48 3.32 16 20 O -0.40 -16.15 9.95 -148.98 -1.48 -17.64 16 21 H 0.05 1.32 7.82 -2.39 -0.02 1.30 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 2.40 6.35 -2.39 -0.02 2.39 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 29 H 0.03 1.39 4.82 -2.39 -0.01 1.37 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 2.75 5.61 -2.39 -0.01 2.74 16 32 H 0.06 2.27 6.34 -2.39 -0.02 2.25 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.01 0.45 6.99 -2.39 -0.02 0.44 16 35 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.11 5.57 3.77 -2.39 -0.01 5.56 16 37 H 0.05 1.90 7.75 -2.39 -0.02 1.88 16 38 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -54.19 278.62 2.73 -51.46 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.02 Total: 14.01 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.27 Total: -20.34 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -3.10 Total: -71.28 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.48 Total: -17.64 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -54.19 2.73 -51.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145270.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.819 kcal (2) G-P(sol) polarization free energy of solvation -54.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds