Wall clock time and date at job start Mon Mar 30 2020 03:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47622 * 2 1 4 4 H 1.09000 * 109.47920 * 54.99711 * 3 2 1 5 5 C 1.53087 * 109.49093 * 175.03198 * 3 2 1 6 6 C 1.53181 * 109.16246 * 177.59933 * 5 3 2 7 7 C 1.50700 * 109.54354 * 62.88317 * 6 5 3 8 8 H 1.07994 * 120.00476 * 355.30381 * 7 6 5 9 9 C 1.37883 * 119.99904 * 175.30708 * 7 6 5 10 10 N 1.31516 * 119.99985 * 353.26777 * 9 7 6 11 11 Si 1.86800 * 120.00173 * 173.26868 * 9 7 6 12 12 H 1.48504 * 109.46830 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46900 * 119.99769 * 11 9 7 14 14 H 1.48500 * 109.47217 * 240.00136 * 11 9 7 15 15 N 1.46906 * 109.54448 * 183.15037 * 6 5 3 16 16 C 1.46895 * 110.99721 * 298.75476 * 15 6 5 17 17 C 1.46902 * 110.99663 * 62.71073 * 15 6 5 18 18 C 1.53181 * 109.03431 * 303.01472 * 6 5 3 19 19 C 1.53092 * 109.16050 * 56.98611 * 18 6 5 20 20 O 1.42905 * 109.41351 * 302.38380 * 19 18 6 21 21 H 1.08994 * 109.47542 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46729 * 300.00486 * 1 2 3 23 23 H 1.08997 * 109.46812 * 59.99624 * 1 2 3 24 24 H 1.09009 * 109.46707 * 240.00051 * 2 1 3 25 25 H 1.09000 * 109.47230 * 120.00097 * 2 1 3 26 26 H 1.09006 * 109.52367 * 297.49840 * 5 3 2 27 27 H 1.08994 * 109.52811 * 57.69214 * 5 3 2 28 28 H 0.97000 * 120.00546 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.46910 * 64.83356 * 16 15 6 30 30 H 1.09004 * 109.47098 * 184.82564 * 16 15 6 31 31 H 1.08992 * 109.47420 * 304.83155 * 16 15 6 32 32 H 1.08999 * 109.46869 * 60.00155 * 17 15 6 33 33 H 1.09001 * 109.46328 * 180.02562 * 17 15 6 34 34 H 1.08998 * 109.47207 * 299.99797 * 17 15 6 35 35 H 1.08994 * 109.52575 * 297.07752 * 18 6 5 36 36 H 1.09004 * 109.51762 * 176.88414 * 18 6 5 37 37 H 1.08999 * 109.47934 * 182.40919 * 19 18 6 38 38 H 1.08994 * 109.49767 * 62.37676 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9816 0.8417 5 6 3.5659 1.4446 0.1250 6 6 4.0733 2.8887 0.0639 7 6 3.5287 3.6644 1.2355 8 1 2.8252 3.2000 1.9106 9 6 3.9287 4.9671 1.4457 10 7 4.8820 5.4897 0.7056 11 14 3.1166 5.9896 2.7815 12 1 2.0814 5.1753 3.4676 13 1 4.1408 6.4197 3.7670 14 1 2.4824 7.1862 2.1723 15 7 5.5417 2.8958 0.1073 16 6 6.0342 2.3030 1.3577 17 6 6.1062 2.2063 -1.0606 18 6 3.5961 3.5310 -1.2423 19 6 2.0691 3.4483 -1.3145 20 8 1.6626 2.0814 -1.2213 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 3.8541 0.9973 1.0763 27 1 3.9994 0.8713 -0.6944 28 1 5.1632 6.4063 0.8532 29 1 5.7604 1.2485 1.3924 30 1 7.1192 2.3982 1.4024 31 1 5.5887 2.8221 2.2062 32 1 5.7809 2.7088 -1.9715 33 1 7.1945 2.2259 -1.0030 34 1 5.7620 1.1721 -1.0734 35 1 4.0301 2.9998 -2.0893 36 1 3.9059 4.5758 -1.2688 37 1 1.7269 3.8654 -2.2615 38 1 1.6348 4.0137 -0.4901 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261145272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:14 Heat of formation + Delta-G solvation = -56.949204 kcal Electronic energy + Delta-G solvation = -17683.618604 eV Core-core repulsion = 15139.579894 eV Total energy + Delta-G solvation = -2544.038709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80577 -37.78596 -34.82242 -34.23695 -32.25319 -30.55226 -28.51525 -27.12734 -25.46768 -24.50630 -23.21233 -21.76770 -20.31187 -17.66643 -17.19518 -16.98670 -16.57217 -15.61326 -15.43930 -15.21107 -14.97767 -14.51604 -14.30621 -14.17133 -13.66957 -13.54623 -12.85219 -12.83517 -12.75226 -12.45106 -12.28526 -12.25129 -12.21949 -11.89994 -11.76449 -11.59209 -11.20336 -11.12515 -10.59456 -10.37681 -10.09155 -8.40954 -7.80438 -6.03140 1.40880 1.47307 1.53445 2.50468 3.06434 3.28396 3.75503 4.00997 4.21543 4.38085 4.41274 4.52863 4.57063 4.62558 4.70304 4.70646 4.76809 4.82871 4.88076 4.94695 4.95739 5.11382 5.11740 5.17974 5.23248 5.29662 5.35837 5.40320 5.48347 5.57936 5.76582 5.94871 6.32180 6.56584 6.71343 6.97504 7.24198 7.64274 9.13692 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022415 B = 0.012533 C = 0.010098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.866483 B = 2233.544640 C = 2772.061944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C 0.103 3.897 4 H 0.043 0.957 5 C -0.160 4.160 6 C 0.237 3.763 7 C -0.527 4.527 8 H 0.043 0.957 9 C 0.050 3.950 10 N -0.856 5.856 11 Si 0.920 3.080 12 H -0.274 1.274 13 H -0.288 1.288 14 H -0.285 1.285 15 N -0.519 5.519 16 C 0.057 3.943 17 C 0.026 3.974 18 C -0.124 4.124 19 C 0.078 3.922 20 O -0.394 6.394 21 H 0.071 0.929 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.250 0.750 29 H 0.009 0.991 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.013 0.987 35 H 0.036 0.964 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 -7.593 -1.835 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C 0.045 3.955 4 H 0.061 0.939 5 C -0.200 4.200 6 C 0.149 3.851 7 C -0.565 4.565 8 H 0.061 0.939 9 C -0.154 4.154 10 N -0.491 5.491 11 Si 0.748 3.252 12 H -0.199 1.199 13 H -0.215 1.215 14 H -0.211 1.211 15 N -0.241 5.241 16 C -0.092 4.092 17 C -0.122 4.122 18 C -0.163 4.163 19 C 0.001 3.999 20 O -0.314 6.314 21 H 0.090 0.910 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.462 -7.017 -2.032 8.084 hybrid contribution -0.155 0.311 1.045 1.102 sum -3.617 -6.706 -0.986 7.683 Atomic orbital electron populations 1.21665 0.94552 1.02079 1.01664 1.21575 0.97271 0.93573 1.02543 1.22008 0.93306 0.93760 0.86449 0.93887 1.22717 0.96995 1.00449 0.99810 1.18659 0.83784 0.89180 0.93456 1.20975 1.26381 0.97349 1.11826 0.93864 1.25381 0.94582 0.98542 0.96939 1.70289 1.26432 1.13268 1.39153 0.86126 0.78783 0.79562 0.80763 1.19857 1.21483 1.21091 1.62206 1.09414 1.52127 1.00343 1.21918 0.98110 0.95042 0.94138 1.22376 0.99162 0.95413 0.95298 1.22012 0.95319 1.01892 0.97027 1.22415 0.94541 0.82257 1.00651 1.87706 1.78984 1.25452 1.39254 0.90998 0.93214 0.93037 0.91538 0.90142 0.92797 0.93374 0.94075 0.97296 0.93482 0.93103 0.92822 0.92479 0.96826 0.94566 0.91930 0.89021 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.81 71.98 0.71 -3.00 16 2 C -0.11 -3.34 5.64 30.59 0.17 -3.17 16 3 C 0.10 3.92 2.41 30.62 0.07 3.99 16 4 H 0.04 1.80 6.77 -2.39 -0.02 1.79 16 5 C -0.16 -6.54 3.46 30.68 0.11 -6.43 16 6 C 0.24 10.97 0.07 2.90 0.00 10.97 16 7 C -0.53 -26.81 4.90 25.60 0.13 -26.69 16 8 H 0.04 2.26 6.75 -2.91 -0.02 2.24 16 9 C 0.05 2.62 5.12 84.66 0.43 3.06 16 10 N -0.86 -46.72 11.12 21.45 0.24 -46.48 16 11 Si 0.92 42.09 29.54 68.60 2.03 44.12 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 N -0.52 -23.98 3.69 -902.27 -3.33 -27.31 16 16 C 0.06 2.43 8.88 127.69 1.13 3.57 16 17 C 0.03 1.03 8.81 127.69 1.13 2.16 16 18 C -0.12 -5.63 4.55 30.69 0.14 -5.49 16 19 C 0.08 3.23 6.62 72.01 0.48 3.71 16 20 O -0.39 -15.73 9.94 -148.98 -1.48 -17.21 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.43 7.82 -2.39 -0.02 1.41 16 24 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.05 2.20 6.73 -2.38 -0.02 2.19 16 27 H 0.05 1.91 6.33 -2.39 -0.02 1.90 16 28 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 29 H 0.01 0.35 6.68 -2.39 -0.02 0.33 16 30 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 2.41 6.85 -2.39 -0.02 2.40 16 32 H 0.05 2.15 6.19 -2.39 -0.01 2.13 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 34 H 0.01 0.51 6.31 -2.39 -0.02 0.49 16 35 H 0.04 1.57 6.20 -2.39 -0.01 1.56 16 36 H 0.06 3.21 6.72 -2.38 -0.02 3.19 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.04 1.76 7.38 -2.39 -0.02 1.75 16 Total: -1.00 -55.79 281.90 2.96 -52.83 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.02 Total: 11.39 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.49 Total: -17.33 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -3.09 Total: -73.79 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.48 Total: -17.21 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -55.79 2.96 -52.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261145272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.121 kcal (2) G-P(sol) polarization free energy of solvation -55.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds