Wall clock time and date at job start Mon Mar 30 2020 03:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.08999 * 109.47263 * 301.97657 * 3 2 1 5 5 C 1.50698 * 109.47312 * 181.97546 * 3 2 1 6 6 H 1.07995 * 120.00239 * 240.00212 * 5 3 2 7 7 C 1.37878 * 119.99611 * 59.99908 * 5 3 2 8 8 N 1.31520 * 120.00315 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99993 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.47033 * 60.00271 * 9 7 5 11 11 H 1.48497 * 109.47347 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47369 * 300.00271 * 9 7 5 13 13 N 1.46903 * 109.47083 * 61.97783 * 3 2 1 14 14 C 1.48534 * 111.00248 * 36.24295 * 13 3 2 15 15 C 1.54939 * 103.22916 * 200.27910 * 14 13 3 16 16 C 1.54602 * 102.92002 * 37.41179 * 15 14 13 17 17 H 1.08996 * 110.30430 * 97.06089 * 16 15 14 18 18 C 1.52997 * 110.30677 * 219.12473 * 16 15 14 19 19 C 1.47904 * 111.00210 * 278.84495 * 13 3 2 20 20 H 1.08999 * 109.91322 * 26.49036 * 19 13 3 21 21 C 1.52998 * 109.91844 * 265.20027 * 19 13 3 22 22 O 1.42900 * 109.47338 * 67.40820 * 21 19 13 23 23 H 1.09004 * 109.46677 * 51.76548 * 1 2 3 24 24 H 1.08997 * 109.47356 * 171.75892 * 1 2 3 25 25 H 1.08992 * 109.47381 * 291.76924 * 1 2 3 26 26 H 1.08999 * 109.47266 * 239.99725 * 2 1 3 27 27 H 1.09003 * 109.46565 * 119.99551 * 2 1 3 28 28 H 0.96993 * 119.99875 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.66515 * 81.84404 * 14 13 3 30 30 H 1.08999 * 110.80574 * 318.78417 * 14 13 3 31 31 H 1.08996 * 110.72229 * 279.05346 * 15 14 13 32 32 H 1.08995 * 110.87730 * 155.84057 * 15 14 13 33 33 H 1.09005 * 109.47167 * 58.55209 * 18 16 15 34 34 H 1.08993 * 109.47613 * 298.54607 * 18 16 15 35 35 H 1.09000 * 109.46882 * 178.54544 * 18 16 15 36 36 H 1.08999 * 109.47114 * 187.40764 * 21 19 13 37 37 H 1.09006 * 109.47188 * 307.40732 * 21 19 13 38 38 H 0.96702 * 114.00149 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6480 1.9665 -0.8717 5 6 3.5462 1.4428 -0.0490 6 1 4.1123 1.9012 0.7483 7 6 4.2014 0.8578 -1.1117 8 7 3.5120 0.3000 -2.0830 9 14 6.0684 0.8588 -1.1729 10 1 6.6030 0.1453 0.0148 11 1 6.5236 0.1722 -2.4084 12 1 6.5630 2.2590 -1.1733 13 7 1.5897 2.1211 1.2226 14 6 1.5923 1.1900 2.3800 15 6 0.6338 1.8737 3.3872 16 6 -0.4628 2.4668 2.4728 17 1 -1.3215 1.7970 2.4288 18 6 -0.8907 3.8446 2.9820 19 6 0.1937 2.5898 1.0853 20 1 -0.3381 1.9666 0.3664 21 6 0.1766 4.0498 0.6282 22 8 0.6807 4.1371 -0.7061 23 1 -0.3633 0.6360 -0.8073 24 1 -0.3634 -1.0170 -0.1473 25 1 -0.3634 0.3811 0.9543 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.9730 -0.1118 -2.8304 29 1 2.5939 1.1023 2.8009 30 1 1.2111 0.2109 2.0900 31 1 1.1486 2.6635 3.9342 32 1 0.2086 1.1435 4.0757 33 1 -0.0250 4.5065 3.0102 34 1 -1.3072 3.7483 3.9845 35 1 -1.6445 4.2608 2.3137 36 1 -0.8456 4.4272 0.6557 37 1 0.8021 4.6459 1.2927 38 1 0.6992 5.0363 -1.0615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299905562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:15 Heat of formation + Delta-G solvation = -33.091627 kcal Electronic energy + Delta-G solvation = -17471.831653 eV Core-core repulsion = 14928.827486 eV Total energy + Delta-G solvation = -2543.004167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44778 -35.80949 -34.60375 -31.97129 -30.46054 -29.52595 -27.45702 -25.04750 -24.09484 -22.64700 -21.08192 -19.08654 -18.46609 -16.96149 -16.16245 -15.35049 -14.64736 -14.49919 -14.11637 -13.83512 -13.26481 -12.75245 -12.67830 -12.27944 -12.04463 -11.72098 -11.40463 -11.07558 -10.93830 -10.84428 -10.71138 -10.44075 -10.37537 -10.22655 -10.02278 -9.81809 -9.64610 -9.39210 -9.23846 -8.69054 -8.17828 -6.97775 -5.84934 -3.86431 3.41002 3.44595 3.48172 4.53219 4.77721 4.97073 5.07996 5.31049 5.43047 5.45361 5.73630 5.81485 5.82775 5.84466 6.01456 6.07457 6.17876 6.19950 6.21700 6.27861 6.43497 6.47277 6.50325 6.62693 6.73459 6.81742 6.90375 7.14202 7.38055 7.58502 7.83337 8.01237 8.24710 8.42580 8.55168 8.76326 9.19450 9.76497 11.21916 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.009214 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.937552 B = 3038.250149 C = 3146.998172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.155 4.155 3 C 0.209 3.791 4 H 0.054 0.946 5 C -0.486 4.486 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.495 5.495 14 C 0.028 3.972 15 C -0.121 4.121 16 C -0.097 4.097 17 H 0.068 0.932 18 C -0.145 4.145 19 C 0.047 3.953 20 H 0.074 0.926 21 C 0.093 3.907 22 O -0.556 6.556 23 H 0.047 0.953 24 H 0.031 0.969 25 H 0.044 0.956 26 H 0.097 0.903 27 H 0.042 0.958 28 H 0.258 0.742 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 4.627 7.522 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.194 4.194 3 C 0.103 3.897 4 H 0.072 0.928 5 C -0.525 4.525 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.219 5.219 14 C -0.100 4.100 15 C -0.159 4.159 16 C -0.116 4.116 17 H 0.086 0.914 18 C -0.202 4.202 19 C -0.062 4.062 20 H 0.091 0.909 21 C 0.015 3.985 22 O -0.359 6.359 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.020 4.319 7.495 11.796 hybrid contribution 0.409 -0.153 -0.316 0.539 sum -7.610 4.166 7.179 11.261 Atomic orbital electron populations 1.22205 0.99901 0.99255 0.99982 1.22273 0.91355 1.02841 1.02902 1.19472 0.94960 0.88087 0.87210 0.92791 1.21072 0.90906 1.34692 1.05840 0.92437 1.24911 0.97966 0.95880 0.95728 1.69875 1.34785 1.38796 1.10226 0.86640 0.86163 0.78026 0.76952 1.20586 1.21572 1.20434 1.64974 1.16087 1.34882 1.05927 1.23327 0.98941 0.95946 0.91752 1.22606 0.96401 0.99549 0.97337 1.21932 0.97723 0.96826 0.95105 0.91385 1.21929 1.01192 0.96974 1.00104 1.22761 0.92769 0.95249 0.95386 0.90865 1.22357 0.95152 0.97334 0.83636 1.86710 1.87746 1.31781 1.29631 0.93411 0.95012 0.93732 0.88513 0.93956 0.93232 0.91008 0.92532 0.91491 0.92317 0.91998 0.93248 0.92822 0.94937 0.93651 0.79143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 7.92 37.16 0.29 -2.91 16 2 C -0.15 -3.76 4.67 -26.73 -0.12 -3.88 16 3 C 0.21 5.41 1.84 -68.86 -0.13 5.28 16 4 H 0.05 1.58 6.64 -51.93 -0.34 1.24 16 5 C -0.49 -13.86 8.69 -34.44 -0.30 -14.16 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 8 N -0.90 -26.35 11.31 55.43 0.63 -25.72 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.49 -10.87 4.77 -216.05 -1.03 -11.90 16 14 C 0.03 0.55 5.45 -1.90 -0.01 0.54 16 15 C -0.12 -1.87 6.61 -24.87 -0.16 -2.03 16 16 C -0.10 -1.45 3.08 -89.26 -0.27 -1.73 16 17 H 0.07 0.96 7.90 -51.93 -0.41 0.55 16 18 C -0.14 -1.79 7.90 37.16 0.29 -1.49 16 19 C 0.05 0.88 1.83 -66.64 -0.12 0.76 16 20 H 0.07 1.48 4.10 -51.93 -0.21 1.26 16 21 C 0.09 1.59 5.50 37.16 0.20 1.80 16 22 O -0.56 -10.71 12.27 -35.23 -0.43 -11.14 16 23 H 0.05 1.01 7.27 -51.93 -0.38 0.63 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.83 4.32 -51.93 -0.22 0.61 16 26 H 0.10 2.66 6.02 -51.93 -0.31 2.35 16 27 H 0.04 1.01 5.94 -51.93 -0.31 0.70 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.06 1.13 4.20 -51.93 -0.22 0.91 16 31 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.79 6.76 -51.93 -0.35 0.44 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.61 6.77 -51.93 -0.35 0.25 16 36 H 0.03 0.46 6.55 -51.93 -0.34 0.12 16 37 H 0.05 0.77 6.95 -51.93 -0.36 0.40 16 38 H 0.36 5.05 9.12 45.56 0.42 5.46 16 LS Contribution 277.09 15.07 4.18 4.18 Total: -1.00 -30.89 277.09 -7.15 -38.04 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.04 Total: 5.77 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -0.42 Total: -16.34 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.40 Total: -37.62 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.43 Total: -11.14 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.89 -7.15 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299905562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.945 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds