Wall clock time and date at job start Mon Mar 30 2020 03:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.08999 * 109.47263 * 301.97657 * 3 2 1 5 5 C 1.50698 * 109.47312 * 181.97546 * 3 2 1 6 6 H 1.07995 * 120.00239 * 240.00212 * 5 3 2 7 7 C 1.37878 * 119.99611 * 59.99908 * 5 3 2 8 8 N 1.31520 * 120.00315 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99993 * 179.97438 * 7 5 3 10 10 H 1.48511 * 109.47033 * 60.00271 * 9 7 5 11 11 H 1.48497 * 109.47347 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47369 * 300.00271 * 9 7 5 13 13 N 1.46903 * 109.47083 * 61.97783 * 3 2 1 14 14 C 1.48534 * 111.00248 * 36.24295 * 13 3 2 15 15 C 1.54939 * 103.22916 * 200.27910 * 14 13 3 16 16 C 1.54602 * 102.92002 * 37.41179 * 15 14 13 17 17 H 1.08996 * 110.30430 * 97.06089 * 16 15 14 18 18 C 1.52997 * 110.30677 * 219.12473 * 16 15 14 19 19 C 1.47904 * 111.00210 * 278.84495 * 13 3 2 20 20 H 1.08999 * 109.91322 * 26.49036 * 19 13 3 21 21 C 1.52998 * 109.91844 * 265.20027 * 19 13 3 22 22 O 1.42900 * 109.47338 * 67.40820 * 21 19 13 23 23 H 1.09004 * 109.46677 * 51.76548 * 1 2 3 24 24 H 1.08997 * 109.47356 * 171.75892 * 1 2 3 25 25 H 1.08992 * 109.47381 * 291.76924 * 1 2 3 26 26 H 1.08999 * 109.47266 * 239.99725 * 2 1 3 27 27 H 1.09003 * 109.46565 * 119.99551 * 2 1 3 28 28 H 0.96993 * 119.99875 * 180.02562 * 8 7 5 29 29 H 1.09001 * 110.66515 * 81.84404 * 14 13 3 30 30 H 1.08999 * 110.80574 * 318.78417 * 14 13 3 31 31 H 1.08996 * 110.72229 * 279.05346 * 15 14 13 32 32 H 1.08995 * 110.87730 * 155.84057 * 15 14 13 33 33 H 1.09005 * 109.47167 * 58.55209 * 18 16 15 34 34 H 1.08993 * 109.47613 * 298.54607 * 18 16 15 35 35 H 1.09000 * 109.46882 * 178.54544 * 18 16 15 36 36 H 1.08999 * 109.47114 * 187.40764 * 21 19 13 37 37 H 1.09006 * 109.47188 * 307.40732 * 21 19 13 38 38 H 0.96702 * 114.00149 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6480 1.9665 -0.8717 5 6 3.5462 1.4428 -0.0490 6 1 4.1123 1.9012 0.7483 7 6 4.2014 0.8578 -1.1117 8 7 3.5120 0.3000 -2.0830 9 14 6.0684 0.8588 -1.1729 10 1 6.6030 0.1453 0.0148 11 1 6.5236 0.1722 -2.4084 12 1 6.5630 2.2590 -1.1733 13 7 1.5897 2.1211 1.2226 14 6 1.5923 1.1900 2.3800 15 6 0.6338 1.8737 3.3872 16 6 -0.4628 2.4668 2.4728 17 1 -1.3215 1.7970 2.4288 18 6 -0.8907 3.8446 2.9820 19 6 0.1937 2.5898 1.0853 20 1 -0.3381 1.9666 0.3664 21 6 0.1766 4.0498 0.6282 22 8 0.6807 4.1371 -0.7061 23 1 -0.3633 0.6360 -0.8073 24 1 -0.3634 -1.0170 -0.1473 25 1 -0.3634 0.3811 0.9543 26 1 1.8934 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8901 28 1 3.9730 -0.1118 -2.8304 29 1 2.5939 1.1023 2.8009 30 1 1.2111 0.2109 2.0900 31 1 1.1486 2.6635 3.9342 32 1 0.2086 1.1435 4.0757 33 1 -0.0250 4.5065 3.0102 34 1 -1.3072 3.7483 3.9845 35 1 -1.6445 4.2608 2.3137 36 1 -0.8456 4.4272 0.6557 37 1 0.8021 4.6459 1.2927 38 1 0.6992 5.0363 -1.0615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299905562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:14 Heat of formation + Delta-G solvation = -56.328816 kcal Electronic energy + Delta-G solvation = -17472.839293 eV Core-core repulsion = 14928.827486 eV Total energy + Delta-G solvation = -2544.011807 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.96447 -37.31430 -36.23707 -33.95682 -32.02712 -31.02108 -29.20833 -26.67412 -25.48215 -24.48066 -22.62858 -20.85398 -19.86095 -18.50669 -18.02911 -17.15534 -16.33328 -16.01875 -15.79429 -15.31464 -14.76995 -14.47692 -14.02618 -13.72888 -13.48025 -13.21254 -13.09474 -12.84864 -12.77128 -12.54796 -12.28553 -12.25200 -11.89458 -11.69962 -11.62310 -11.46692 -11.26637 -11.08325 -10.73318 -10.58882 -10.34597 -8.69141 -8.03234 -6.12887 1.40345 1.42663 1.50158 2.45521 3.23382 3.50523 3.51727 3.86518 4.10794 4.13715 4.37482 4.47258 4.53573 4.54228 4.58979 4.68291 4.70232 4.81383 4.88239 4.92754 5.05571 5.09266 5.12001 5.25253 5.28360 5.30369 5.39861 5.47309 5.55962 5.66805 5.82744 5.91293 6.36925 6.63583 6.82358 7.01023 7.13910 7.54969 9.01562 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.009214 C = 0.008895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.937552 B = 3038.250149 C = 3146.998172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.220 3.780 4 H 0.012 0.988 5 C -0.507 4.507 6 H 0.044 0.956 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.511 5.511 14 C 0.022 3.978 15 C -0.109 4.109 16 C -0.091 4.091 17 H 0.083 0.917 18 C -0.140 4.140 19 C 0.038 3.962 20 H 0.056 0.944 21 C 0.093 3.907 22 O -0.592 6.592 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.258 0.742 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.591 5.181 9.238 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.187 4.187 3 C 0.112 3.888 4 H 0.030 0.970 5 C -0.546 4.546 6 H 0.063 0.937 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.781 3.219 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.234 5.234 14 C -0.106 4.106 15 C -0.147 4.147 16 C -0.110 4.110 17 H 0.102 0.898 18 C -0.197 4.197 19 C -0.071 4.071 20 H 0.074 0.926 21 C 0.015 3.985 22 O -0.398 6.398 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.145 4.893 9.224 13.880 hybrid contribution 0.748 -0.297 -0.856 1.175 sum -8.396 4.597 8.368 12.714 Atomic orbital electron populations 1.22037 0.96806 1.00288 1.00734 1.22074 0.94109 1.01496 1.00975 1.19084 0.93438 0.88593 0.87643 0.96979 1.21380 0.92755 1.34751 1.05664 0.93724 1.25670 1.02416 0.95524 0.95390 1.70024 1.36355 1.39227 1.10583 0.85663 0.80866 0.78079 0.77253 1.19793 1.20915 1.20139 1.64842 1.18818 1.34913 1.04842 1.23356 0.99257 0.95816 0.92127 1.22565 0.95480 0.99987 0.96674 1.21949 0.97590 0.99012 0.92417 0.89844 1.21885 1.01322 0.94865 1.01589 1.22941 0.90818 0.95819 0.97538 0.92624 1.22478 0.97002 0.96430 0.82583 1.86670 1.88247 1.33923 1.30991 0.94566 0.93195 0.91571 0.92093 0.94054 0.93296 0.92823 0.93170 0.90935 0.89526 0.92689 0.90971 0.91538 0.91416 0.93605 0.76913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 7.92 71.98 0.57 -5.18 16 2 C -0.15 -7.34 4.67 30.59 0.14 -7.19 16 3 C 0.22 11.74 1.84 44.17 0.08 11.82 16 4 H 0.01 0.75 6.64 -2.39 -0.02 0.74 16 5 C -0.51 -29.82 8.69 25.60 0.22 -29.60 16 6 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.44 5.30 84.65 0.45 0.89 16 8 N -0.92 -55.78 11.31 21.45 0.24 -55.54 16 9 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 N -0.51 -22.55 4.77 -837.44 -3.99 -26.54 16 14 C 0.02 0.86 5.45 86.65 0.47 1.33 16 15 C -0.11 -3.05 6.61 31.80 0.21 -2.84 16 16 C -0.09 -2.42 3.08 -9.91 -0.03 -2.45 16 17 H 0.08 2.01 7.90 -2.39 -0.02 1.99 16 18 C -0.14 -2.86 7.90 71.98 0.57 -2.29 16 19 C 0.04 1.36 1.83 45.06 0.08 1.44 16 20 H 0.06 2.21 4.10 -2.39 -0.01 2.20 16 21 C 0.09 3.03 5.50 71.98 0.40 3.42 16 22 O -0.59 -22.96 12.27 -148.98 -1.83 -24.78 16 23 H 0.04 1.53 7.27 -2.39 -0.02 1.52 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.07 2.38 4.32 -2.39 -0.01 2.37 16 26 H 0.06 3.48 6.02 -2.39 -0.01 3.46 16 27 H 0.04 2.02 5.94 -2.39 -0.01 2.01 16 28 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.97 4.20 -2.39 -0.01 1.96 16 31 H 0.07 1.96 7.86 -2.39 -0.02 1.94 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.22 6.76 -2.38 -0.02 1.20 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.20 6.77 -2.39 -0.02 1.19 16 36 H 0.07 1.72 6.55 -2.39 -0.02 1.71 16 37 H 0.05 1.48 6.95 -2.38 -0.02 1.46 16 38 H 0.38 10.61 9.12 -74.06 -0.68 9.93 16 Total: -1.00 -68.86 277.09 -0.01 -68.86 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.38 Total: 20.42 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 3.16 Total: -30.66 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -3.75 Total: -82.08 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -1.83 Total: -24.78 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -68.86 -0.01 -68.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299905562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.536 kcal (2) G-P(sol) polarization free energy of solvation -68.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds