Wall clock time and date at job start Mon Mar 30 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47433 * 2 1 4 4 H 1.09002 * 109.47173 * 303.64654 * 3 2 1 5 5 C 1.50699 * 109.47095 * 183.65003 * 3 2 1 6 6 H 1.07997 * 120.00085 * 245.30867 * 5 3 2 7 7 C 1.37879 * 120.00138 * 65.32008 * 5 3 2 8 8 N 1.31509 * 120.00015 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00026 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47606 * 59.99199 * 9 7 5 11 11 H 1.48501 * 109.47036 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47172 * 299.99338 * 9 7 5 13 13 N 1.46898 * 109.47180 * 63.65019 * 3 2 1 14 14 C 1.48561 * 110.99813 * 32.19761 * 13 3 2 15 15 C 1.54379 * 104.59260 * 200.96157 * 14 13 3 16 16 C 1.54258 * 105.06392 * 23.85586 * 15 14 13 17 17 H 1.09003 * 110.40972 * 241.06412 * 16 15 14 18 18 C 1.53000 * 110.32697 * 118.89301 * 16 15 14 19 19 C 1.48560 * 110.99996 * 276.78428 * 13 3 2 20 20 H 1.09007 * 110.41290 * 40.13820 * 19 13 3 21 21 C 1.53005 * 110.40908 * 277.81744 * 19 13 3 22 22 O 1.42908 * 109.47063 * 65.42385 * 21 19 13 23 23 H 1.09006 * 109.47679 * 47.99927 * 1 2 3 24 24 H 1.09003 * 109.47118 * 287.99708 * 1 2 3 25 25 H 1.09005 * 109.47751 * 167.99550 * 1 2 3 26 26 H 1.08996 * 109.47483 * 120.00353 * 2 1 3 27 27 H 1.09005 * 109.47023 * 239.99537 * 2 1 3 28 28 H 0.97002 * 120.00318 * 180.02562 * 8 7 5 29 29 H 1.08997 * 110.41494 * 319.73912 * 14 13 3 30 30 H 1.08997 * 110.40840 * 82.18606 * 14 13 3 31 31 H 1.09006 * 110.32579 * 264.95668 * 15 14 13 32 32 H 1.09000 * 110.40754 * 142.79507 * 15 14 13 33 33 H 1.08996 * 109.46855 * 304.36968 * 18 16 15 34 34 H 1.08997 * 109.46669 * 64.36144 * 18 16 15 35 35 H 1.08992 * 109.46964 * 184.36367 * 18 16 15 36 36 H 1.09004 * 109.47243 * 185.42312 * 21 19 13 37 37 H 1.08994 * 109.47342 * 305.42562 * 21 19 13 38 38 H 0.96703 * 113.99611 * 184.99153 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9748 -0.8555 5 6 3.5442 1.4433 -0.0905 6 1 4.1345 1.8162 0.7335 7 6 4.1670 0.9683 -1.2252 8 7 3.4482 0.5139 -2.2284 9 14 6.0316 0.9687 -1.3370 10 1 6.5933 0.1352 -0.2438 11 1 6.4490 0.4111 -2.6485 12 1 6.5350 2.3598 -1.2074 13 7 1.6237 2.1090 1.2411 14 6 1.5645 1.1445 2.3694 15 6 0.6355 1.8138 3.4050 16 6 -0.2392 2.7874 2.5886 17 1 -0.0829 3.8123 2.9253 18 6 -1.7160 2.4073 2.7134 19 6 0.2349 2.6245 1.1285 20 1 -0.3947 1.9086 0.6001 21 6 0.2238 3.9753 0.4100 22 8 0.6521 3.7993 -0.9419 23 1 -0.3635 0.6877 -0.7637 24 1 -0.3633 0.3175 0.9774 25 1 -0.3635 -1.0052 -0.2137 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 3.8863 0.1794 -3.0266 29 1 1.1425 0.1960 2.0371 30 1 2.5577 0.9925 2.7920 31 1 1.2228 2.3603 4.1430 32 1 0.0127 1.0661 3.8960 33 1 -1.8508 1.3693 2.4094 34 1 -2.0357 2.5271 3.7485 35 1 -2.3132 3.0545 2.0713 36 1 -0.7866 4.3843 0.4207 37 1 0.8994 4.6630 0.9186 38 1 0.7427 4.6254 -1.4365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299905563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:16 Heat of formation + Delta-G solvation = -36.942050 kcal Electronic energy + Delta-G solvation = -17487.466250 eV Core-core repulsion = 14944.295116 eV Total energy + Delta-G solvation = -2543.171134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.33644 -35.74749 -34.54874 -31.90893 -30.37701 -29.60291 -27.56233 -25.48411 -23.31301 -22.78231 -21.00287 -19.33478 -18.62038 -16.56500 -15.96585 -15.57271 -14.99540 -14.53941 -14.12207 -13.38404 -13.05689 -12.86814 -12.73617 -12.45562 -12.15928 -11.47323 -11.33455 -11.09072 -11.00453 -10.82119 -10.70093 -10.43130 -10.35828 -10.29075 -10.21223 -9.78036 -9.58731 -9.34909 -9.25953 -8.64426 -8.13824 -7.00951 -5.83516 -3.83895 3.41493 3.45159 3.48704 4.54580 4.72936 4.97334 5.12761 5.38197 5.47252 5.52871 5.73453 5.80769 5.84680 5.89958 5.95018 6.07180 6.13270 6.14994 6.22950 6.33924 6.43043 6.45842 6.47948 6.67217 6.73429 6.79151 6.92003 7.16169 7.36471 7.61096 7.77642 8.01506 8.24733 8.47850 8.55743 8.78421 9.22937 9.78283 11.24408 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031810 B = 0.009305 C = 0.008910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.007952 B = 3008.388235 C = 3141.803653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C 0.199 3.801 4 H 0.074 0.926 5 C -0.487 4.487 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.490 5.490 14 C 0.021 3.979 15 C -0.120 4.120 16 C -0.091 4.091 17 H 0.070 0.930 18 C -0.142 4.142 19 C 0.042 3.958 20 H 0.075 0.925 21 C 0.095 3.905 22 O -0.550 6.550 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.031 0.969 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.257 0.743 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.646 3.926 7.227 11.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C 0.092 3.908 4 H 0.092 0.908 5 C -0.526 4.526 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.214 5.214 14 C -0.107 4.107 15 C -0.158 4.158 16 C -0.110 4.110 17 H 0.089 0.911 18 C -0.200 4.200 19 C -0.067 4.067 20 H 0.093 0.907 21 C 0.016 3.984 22 O -0.353 6.353 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.223 3.643 7.300 11.584 hybrid contribution 0.507 -0.105 -0.434 0.676 sum -7.716 3.538 6.866 10.918 Atomic orbital electron populations 1.22208 0.99709 0.99428 0.99948 1.22228 0.91570 1.02950 1.02135 1.19675 0.95255 0.88315 0.87507 0.90830 1.21065 0.91092 1.39430 1.00990 0.92625 1.24902 0.97690 0.95995 0.95807 1.69921 1.34642 1.43061 1.05856 0.86683 0.86413 0.78132 0.76795 1.20620 1.21586 1.20487 1.65667 1.17434 1.31714 1.06580 1.23276 0.98961 0.96130 0.92335 1.22401 0.97582 0.97876 0.97974 1.21806 0.94249 0.99636 0.95352 0.91109 1.21872 0.95794 1.01405 1.00938 1.23117 0.93840 0.96128 0.93644 0.90712 1.22071 0.95883 0.97108 0.83306 1.86729 1.90643 1.34287 1.23665 0.93145 0.93717 0.95020 0.93962 0.89534 0.93295 0.92330 0.91214 0.92024 0.92346 0.92706 0.92957 0.92951 0.95214 0.93800 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 7.91 37.15 0.29 -2.90 16 2 C -0.15 -3.63 4.73 -26.74 -0.13 -3.75 16 3 C 0.20 5.11 1.72 -68.87 -0.12 4.99 16 4 H 0.07 2.10 5.49 -51.93 -0.28 1.82 16 5 C -0.49 -13.88 8.71 -34.44 -0.30 -14.18 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.61 5.31 -17.82 -0.09 1.51 16 8 N -0.89 -26.36 11.71 55.43 0.65 -25.71 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 N -0.49 -10.78 4.93 -215.62 -1.06 -11.84 16 14 C 0.02 0.41 5.35 -2.18 -0.01 0.40 16 15 C -0.12 -1.86 6.65 -25.35 -0.17 -2.03 16 16 C -0.09 -1.37 3.21 -89.24 -0.29 -1.66 16 17 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 18 C -0.14 -1.78 8.90 37.16 0.33 -1.45 16 19 C 0.04 0.77 1.66 -66.07 -0.11 0.66 16 20 H 0.08 1.46 3.64 -51.92 -0.19 1.27 16 21 C 0.09 1.64 6.61 37.16 0.25 1.89 16 22 O -0.55 -10.76 11.20 -35.23 -0.39 -11.15 16 23 H 0.05 1.07 7.38 -51.93 -0.38 0.69 16 24 H 0.04 0.83 4.66 -51.93 -0.24 0.59 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 1.00 5.91 -51.93 -0.31 0.69 16 27 H 0.09 2.37 6.43 -51.93 -0.33 2.04 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.06 1.17 3.87 -51.93 -0.20 0.97 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 33 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.36 5.31 9.12 45.56 0.42 5.72 16 LS Contribution 282.46 15.07 4.26 4.26 Total: -1.00 -30.86 282.46 -7.16 -38.02 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.24 Total: 5.82 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -0.35 Total: -16.53 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.41 Total: -37.55 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.39 Total: -11.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.86 -7.16 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299905563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.082 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds