Wall clock time and date at job start Mon Mar 30 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52996 * 109.47433 * 2 1 4 4 H 1.09002 * 109.47173 * 303.64654 * 3 2 1 5 5 C 1.50699 * 109.47095 * 183.65003 * 3 2 1 6 6 H 1.07997 * 120.00085 * 245.30867 * 5 3 2 7 7 C 1.37879 * 120.00138 * 65.32008 * 5 3 2 8 8 N 1.31509 * 120.00015 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00026 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47606 * 59.99199 * 9 7 5 11 11 H 1.48501 * 109.47036 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47172 * 299.99338 * 9 7 5 13 13 N 1.46898 * 109.47180 * 63.65019 * 3 2 1 14 14 C 1.48561 * 110.99813 * 32.19761 * 13 3 2 15 15 C 1.54379 * 104.59260 * 200.96157 * 14 13 3 16 16 C 1.54258 * 105.06392 * 23.85586 * 15 14 13 17 17 H 1.09003 * 110.40972 * 241.06412 * 16 15 14 18 18 C 1.53000 * 110.32697 * 118.89301 * 16 15 14 19 19 C 1.48560 * 110.99996 * 276.78428 * 13 3 2 20 20 H 1.09007 * 110.41290 * 40.13820 * 19 13 3 21 21 C 1.53005 * 110.40908 * 277.81744 * 19 13 3 22 22 O 1.42908 * 109.47063 * 65.42385 * 21 19 13 23 23 H 1.09006 * 109.47679 * 47.99927 * 1 2 3 24 24 H 1.09003 * 109.47118 * 287.99708 * 1 2 3 25 25 H 1.09005 * 109.47751 * 167.99550 * 1 2 3 26 26 H 1.08996 * 109.47483 * 120.00353 * 2 1 3 27 27 H 1.09005 * 109.47023 * 239.99537 * 2 1 3 28 28 H 0.97002 * 120.00318 * 180.02562 * 8 7 5 29 29 H 1.08997 * 110.41494 * 319.73912 * 14 13 3 30 30 H 1.08997 * 110.40840 * 82.18606 * 14 13 3 31 31 H 1.09006 * 110.32579 * 264.95668 * 15 14 13 32 32 H 1.09000 * 110.40754 * 142.79507 * 15 14 13 33 33 H 1.08996 * 109.46855 * 304.36968 * 18 16 15 34 34 H 1.08997 * 109.46669 * 64.36144 * 18 16 15 35 35 H 1.08992 * 109.46964 * 184.36367 * 18 16 15 36 36 H 1.09004 * 109.47243 * 185.42312 * 21 19 13 37 37 H 1.08994 * 109.47342 * 305.42562 * 21 19 13 38 38 H 0.96703 * 113.99611 * 184.99153 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9748 -0.8555 5 6 3.5442 1.4433 -0.0905 6 1 4.1345 1.8162 0.7335 7 6 4.1670 0.9683 -1.2252 8 7 3.4482 0.5139 -2.2284 9 14 6.0316 0.9687 -1.3370 10 1 6.5933 0.1352 -0.2438 11 1 6.4490 0.4111 -2.6485 12 1 6.5350 2.3598 -1.2074 13 7 1.6237 2.1090 1.2411 14 6 1.5645 1.1445 2.3694 15 6 0.6355 1.8138 3.4050 16 6 -0.2392 2.7874 2.5886 17 1 -0.0829 3.8123 2.9253 18 6 -1.7160 2.4073 2.7134 19 6 0.2349 2.6245 1.1285 20 1 -0.3947 1.9086 0.6001 21 6 0.2238 3.9753 0.4100 22 8 0.6521 3.7993 -0.9419 23 1 -0.3635 0.6877 -0.7637 24 1 -0.3633 0.3175 0.9774 25 1 -0.3635 -1.0052 -0.2137 26 1 1.8933 -0.5139 0.8899 27 1 1.8932 -0.5139 -0.8900 28 1 3.8863 0.1794 -3.0266 29 1 1.1425 0.1960 2.0371 30 1 2.5577 0.9925 2.7920 31 1 1.2228 2.3603 4.1430 32 1 0.0127 1.0661 3.8960 33 1 -1.8508 1.3693 2.4094 34 1 -2.0357 2.5271 3.7485 35 1 -2.3132 3.0545 2.0713 36 1 -0.7866 4.3843 0.4207 37 1 0.8994 4.6630 0.9186 38 1 0.7427 4.6254 -1.4365 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299905563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:16 Heat of formation + Delta-G solvation = -59.834152 kcal Electronic energy + Delta-G solvation = -17488.458926 eV Core-core repulsion = 14944.295116 eV Total energy + Delta-G solvation = -2544.163810 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86458 -37.22902 -36.21434 -33.90522 -31.94813 -31.03653 -29.26826 -27.13259 -24.82893 -24.52163 -22.57396 -20.76373 -20.35329 -18.12024 -17.90586 -17.23313 -16.62395 -16.02039 -15.96439 -14.95308 -14.57163 -14.35026 -14.06689 -13.93917 -13.55954 -13.21384 -12.95738 -12.87434 -12.65953 -12.57831 -12.41088 -12.21754 -11.84620 -11.75718 -11.63269 -11.43187 -11.37900 -10.95924 -10.80146 -10.59807 -10.25566 -8.71970 -8.01554 -6.09485 1.40572 1.42429 1.49975 2.46734 3.25496 3.44942 3.54976 3.88765 4.15186 4.22952 4.39951 4.45445 4.50584 4.58317 4.62069 4.65891 4.69878 4.73614 4.82875 4.95769 5.04773 5.11889 5.18942 5.21769 5.30427 5.33020 5.37674 5.49779 5.56035 5.70036 5.86413 5.88301 6.37957 6.66573 6.84242 7.02994 7.13350 7.57339 9.04355 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031810 B = 0.009305 C = 0.008910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.007952 B = 3008.388235 C = 3141.803653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.207 3.793 4 H 0.043 0.957 5 C -0.506 4.506 6 H 0.041 0.959 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.508 5.508 14 C 0.016 3.984 15 C -0.111 4.111 16 C -0.084 4.084 17 H 0.083 0.917 18 C -0.138 4.138 19 C 0.034 3.966 20 H 0.065 0.935 21 C 0.092 3.908 22 O -0.583 6.583 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.257 0.743 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 4.465 8.802 13.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.099 3.901 4 H 0.060 0.940 5 C -0.545 4.545 6 H 0.060 0.940 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.232 5.232 14 C -0.112 4.112 15 C -0.149 4.149 16 C -0.103 4.103 17 H 0.101 0.899 18 C -0.195 4.195 19 C -0.075 4.075 20 H 0.083 0.917 21 C 0.014 3.986 22 O -0.390 6.390 23 H 0.056 0.944 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.381 4.200 8.887 13.588 hybrid contribution 0.864 -0.237 -0.918 1.282 sum -8.517 3.963 7.970 12.319 Atomic orbital electron populations 1.22030 0.96656 1.00250 1.00793 1.22051 0.94271 1.01743 1.00176 1.19334 0.93557 0.88820 0.88367 0.93975 1.21387 0.93032 1.39389 1.00703 0.94027 1.25626 1.01986 0.95706 0.95526 1.70056 1.36199 1.43635 1.06175 0.85724 0.81300 0.78189 0.76991 1.20014 1.20959 1.20137 1.65524 1.20283 1.31877 1.05485 1.23295 0.99119 0.95994 0.92773 1.22375 0.97165 0.98393 0.96980 1.21813 0.95845 1.00271 0.92389 0.89904 1.21844 0.93689 1.01229 1.02756 1.23296 0.91599 0.96311 0.96254 0.91745 1.22215 0.97658 0.96568 0.82164 1.86686 1.91030 1.36229 1.25051 0.94395 0.91528 0.93301 0.94014 0.93248 0.93398 0.92932 0.93066 0.91079 0.89890 0.93205 0.90558 0.92020 0.91752 0.93984 0.77036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 7.91 71.98 0.57 -5.11 16 2 C -0.14 -7.08 4.73 30.59 0.14 -6.94 16 3 C 0.21 10.88 1.72 44.17 0.08 10.96 16 4 H 0.04 2.50 5.49 -2.39 -0.01 2.49 16 5 C -0.51 -29.69 8.71 25.60 0.22 -29.47 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.01 0.54 5.31 84.66 0.45 0.99 16 8 N -0.92 -55.69 11.71 21.45 0.25 -55.44 16 9 Si 0.95 46.20 29.54 68.60 2.03 48.22 16 10 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 N -0.51 -22.33 4.93 -836.07 -4.12 -26.45 16 14 C 0.02 0.62 5.35 86.45 0.46 1.08 16 15 C -0.11 -3.12 6.65 31.49 0.21 -2.91 16 16 C -0.08 -2.26 3.21 -9.90 -0.03 -2.29 16 17 H 0.08 2.05 7.86 -2.39 -0.02 2.04 16 18 C -0.14 -2.86 8.90 71.98 0.64 -2.22 16 19 C 0.03 1.21 1.66 45.06 0.07 1.28 16 20 H 0.06 2.43 3.64 -2.38 -0.01 2.42 16 21 C 0.09 3.05 6.61 71.98 0.48 3.53 16 22 O -0.58 -22.95 11.20 -148.98 -1.67 -24.62 16 23 H 0.04 1.61 7.38 -2.38 -0.02 1.59 16 24 H 0.07 2.38 4.66 -2.39 -0.01 2.37 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.04 2.02 5.91 -2.39 -0.01 2.01 16 27 H 0.05 2.79 6.43 -2.38 -0.02 2.78 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.05 2.06 3.87 -2.39 -0.01 2.05 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.86 16 32 H 0.08 1.95 7.71 -2.39 -0.02 1.93 16 33 H 0.05 1.09 7.83 -2.39 -0.02 1.07 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.38 11.18 9.12 -74.06 -0.68 10.50 16 Total: -1.00 -68.06 282.46 0.15 -67.91 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.37 Total: 21.48 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 3.29 Total: -31.09 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.87 Total: -81.89 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -1.67 Total: -24.62 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -68.06 0.15 -67.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299905563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.072 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds