Wall clock time and date at job start Mon Mar 30 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47324 * 2 1 4 4 H 1.09003 * 109.86580 * 53.99767 * 3 2 1 5 5 O 1.43742 * 109.88142 * 292.84012 * 3 2 1 6 6 C 1.44383 * 106.97387 * 267.08499 * 5 3 2 7 7 C 1.54998 * 103.48856 * 319.93983 * 6 5 3 8 8 C 1.54094 * 109.87961 * 175.00045 * 3 2 1 9 9 H 1.08999 * 110.49185 * 358.59177 * 8 3 2 10 10 C 1.53002 * 110.49158 * 236.07564 * 8 3 2 11 11 N 1.46900 * 109.47217 * 175.00173 * 10 8 3 12 12 C 1.46896 * 111.00098 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47098 * 35.00232 * 12 11 10 14 14 C 1.53004 * 109.47256 * 275.00364 * 12 11 10 15 15 C 1.50697 * 109.47281 * 155.00195 * 12 11 10 16 16 H 1.08004 * 120.00372 * 95.27906 * 15 12 11 17 17 C 1.37874 * 119.99869 * 275.28183 * 15 12 11 18 18 N 1.31518 * 120.00123 * 5.79978 * 17 15 12 19 19 Si 1.86805 * 120.00218 * 185.80139 * 17 15 12 20 20 H 1.48496 * 109.47184 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.46801 * 299.99937 * 19 17 15 22 22 H 1.48496 * 109.46961 * 59.99477 * 19 17 15 23 23 H 1.08996 * 109.47582 * 59.99095 * 1 2 3 24 24 H 1.08997 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46852 * 299.99214 * 1 2 3 26 26 H 1.09004 * 109.46852 * 240.00786 * 2 1 3 27 27 H 1.08996 * 109.47582 * 120.00905 * 2 1 3 28 28 H 1.09003 * 110.61899 * 78.43965 * 6 5 3 29 29 H 1.08995 * 110.61848 * 201.28107 * 6 5 3 30 30 H 1.09003 * 110.90775 * 278.82401 * 7 6 5 31 31 H 1.09000 * 110.90515 * 155.21891 * 7 6 5 32 32 H 1.08999 * 109.47192 * 55.00192 * 10 8 3 33 33 H 1.09005 * 109.47050 * 295.00074 * 10 8 3 34 34 H 1.00898 * 111.00325 * 303.95930 * 11 10 8 35 35 H 1.08998 * 109.47207 * 55.17973 * 14 12 11 36 36 H 1.09000 * 109.47134 * 175.17845 * 14 12 11 37 37 H 1.09000 * 109.46661 * 295.17821 * 14 12 11 38 38 H 0.96996 * 120.00186 * 355.09311 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9926 0.8293 5 8 1.7083 2.0783 -1.2458 6 6 2.8401 1.9002 -2.1244 7 6 4.0593 2.1101 -1.1906 8 6 3.5758 1.4553 0.1263 9 1 3.9600 0.4389 0.2128 10 6 4.0071 2.2938 1.3312 11 7 5.4628 2.1936 1.5015 12 6 5.9142 2.9884 2.6515 13 1 5.1583 2.9540 3.4361 14 6 6.1309 4.4389 2.2154 15 6 7.2087 2.4228 3.1760 16 1 8.1509 2.8396 2.8518 17 6 7.1904 1.3732 4.0698 18 7 6.0519 0.7910 4.3772 19 14 8.7828 0.7779 4.8443 20 1 8.4941 -0.3525 5.7629 21 1 9.7125 0.3254 3.7785 22 1 9.4073 1.8882 5.6074 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 2.8462 0.8939 -2.5433 29 1 2.8298 2.6456 -2.9195 30 1 4.2604 3.1717 -1.0462 31 1 4.9396 1.5981 -1.5792 32 1 3.5101 1.9238 2.2280 33 1 3.7314 3.3354 1.1664 34 1 5.7510 1.2309 1.5915 35 1 5.2185 4.8209 1.7576 36 1 6.3827 5.0460 3.0850 37 1 6.9460 4.4831 1.4931 38 1 5.2175 1.1444 4.0313 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300386569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:35 Heat of formation + Delta-G solvation = -75.254369 kcal Electronic energy + Delta-G solvation = -16468.339684 eV Core-core repulsion = 13923.507203 eV Total energy + Delta-G solvation = -2544.832481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64996 -36.15702 -33.40319 -33.03019 -31.29307 -29.28487 -27.86458 -24.91800 -24.12544 -22.73151 -20.81531 -20.18865 -20.00624 -16.98810 -16.43571 -15.90416 -14.58600 -14.39511 -14.03872 -13.79613 -13.76000 -13.63711 -13.12109 -12.75519 -12.47450 -11.94366 -11.52606 -11.38217 -11.29339 -11.08274 -10.87999 -10.79887 -10.73995 -10.58701 -10.43431 -10.15081 -10.11377 -9.84104 -9.42829 -8.64747 -8.44397 -7.21914 -6.46503 -4.19530 3.40326 3.41296 3.60462 4.08131 4.46145 4.67124 4.87826 5.08606 5.14730 5.21609 5.27328 5.38170 5.51969 5.55482 5.73218 5.85132 5.86186 5.94039 6.01484 6.04588 6.12961 6.28434 6.31975 6.33323 6.41583 6.45745 6.59606 6.68468 6.73687 7.00157 7.09577 7.34504 7.91092 8.35393 8.47379 8.67529 8.83008 9.53972 10.90986 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033535 B = 0.006361 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.748525 B = 4400.925360 C = 4830.102604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.080 3.920 4 H 0.091 0.909 5 O -0.374 6.374 6 C 0.042 3.958 7 C -0.133 4.133 8 C -0.112 4.112 9 H 0.079 0.921 10 C 0.066 3.934 11 N -0.686 5.686 12 C 0.188 3.812 13 H 0.003 0.997 14 C -0.118 4.118 15 C -0.589 4.589 16 H 0.053 0.947 17 C 0.020 3.980 18 N -0.910 5.910 19 Si 1.070 2.930 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.338 0.662 35 H 0.023 0.977 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 -0.339 -9.330 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.021 3.979 4 H 0.109 0.891 5 O -0.293 6.293 6 C -0.035 4.035 7 C -0.170 4.170 8 C -0.131 4.131 9 H 0.098 0.902 10 C -0.064 4.064 11 N -0.319 5.319 12 C 0.081 3.919 13 H 0.020 0.980 14 C -0.177 4.177 15 C -0.629 4.629 16 H 0.071 0.929 17 C -0.185 4.185 18 N -0.546 5.546 19 Si 0.898 3.102 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.214 1.214 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.157 0.843 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.634 -0.873 -8.817 11.068 hybrid contribution -0.757 0.473 -0.225 0.921 sum -7.391 -0.399 -9.041 11.685 Atomic orbital electron populations 1.21692 0.95556 1.01090 1.02048 1.22030 0.96632 0.96843 1.02419 1.22864 0.94646 0.93067 0.87285 0.89131 1.88850 1.39159 1.77120 1.24211 1.23590 0.85742 1.00463 0.93680 1.23013 0.97569 1.02335 0.94113 1.22584 0.93544 1.00532 0.96464 0.90232 1.21962 0.92000 0.98258 0.94172 1.61146 1.08012 1.16402 1.46319 1.19255 0.95369 0.90359 0.86887 0.97977 1.21642 0.98907 0.97765 0.99344 1.22078 0.92610 1.20577 1.27588 0.92889 1.25966 1.03876 0.93832 0.94808 1.70853 0.98480 1.38829 1.46452 0.83517 0.74034 0.76254 0.76365 1.20866 1.21335 1.21373 0.92321 0.93136 0.92887 0.91894 0.90980 0.92851 0.89552 0.90284 0.90414 0.96396 0.92221 0.84305 0.95796 0.94216 0.93664 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.83 37.16 0.37 -1.34 16 2 C -0.14 -1.84 5.37 -26.73 -0.14 -1.98 16 3 C 0.08 1.16 3.11 -26.16 -0.08 1.08 16 4 H 0.09 1.36 7.69 -51.93 -0.40 0.96 16 5 O -0.37 -5.62 10.84 -35.23 -0.38 -6.00 16 6 C 0.04 0.54 7.63 38.21 0.29 0.83 16 7 C -0.13 -1.93 6.60 -24.72 -0.16 -2.10 16 8 C -0.11 -1.79 2.85 -89.09 -0.25 -2.04 16 9 H 0.08 1.30 7.70 -51.93 -0.40 0.90 16 10 C 0.07 1.27 4.60 -3.82 -0.02 1.25 16 11 N -0.69 -15.35 6.19 -107.95 -0.67 -16.02 16 12 C 0.19 4.70 2.16 -68.87 -0.15 4.55 16 13 H 0.00 0.07 6.62 -51.93 -0.34 -0.27 16 14 C -0.12 -2.63 9.42 37.16 0.35 -2.28 16 15 C -0.59 -16.23 8.29 -34.44 -0.29 -16.52 16 16 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 17 C 0.02 0.56 5.45 -17.82 -0.10 0.46 16 18 N -0.91 -26.53 13.63 55.43 0.76 -25.77 16 19 Si 1.07 24.64 29.91 -169.99 -5.08 19.56 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 23 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.79 7.99 -51.93 -0.41 0.37 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.63 8.03 -51.93 -0.42 0.21 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.24 7.77 -51.93 -0.40 0.84 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.06 1.14 7.21 -51.93 -0.37 0.77 16 34 H 0.34 8.18 8.35 -39.29 -0.33 7.85 16 35 H 0.02 0.47 7.36 -51.93 -0.38 0.09 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.27 7.76 6.79 -40.82 -0.28 7.48 16 LS Contribution 303.47 15.07 4.57 4.57 Total: -1.00 -28.56 303.47 -7.72 -36.28 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.73 Total: 5.47 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -0.18 Total: -18.09 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.09 Total: -41.79 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.38 Total: -6.00 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.56 -7.72 -36.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300386569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.972 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds