Wall clock time and date at job start Mon Mar 30 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47324 * 2 1 4 4 H 1.09003 * 109.86580 * 53.99767 * 3 2 1 5 5 O 1.43742 * 109.88142 * 292.84012 * 3 2 1 6 6 C 1.44383 * 106.97387 * 267.08499 * 5 3 2 7 7 C 1.54998 * 103.48856 * 319.93983 * 6 5 3 8 8 C 1.54094 * 109.87961 * 175.00045 * 3 2 1 9 9 H 1.08999 * 110.49185 * 358.59177 * 8 3 2 10 10 C 1.53002 * 110.49158 * 236.07564 * 8 3 2 11 11 N 1.46900 * 109.47217 * 175.00173 * 10 8 3 12 12 C 1.46896 * 111.00098 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47098 * 35.00232 * 12 11 10 14 14 C 1.53004 * 109.47256 * 275.00364 * 12 11 10 15 15 C 1.50697 * 109.47281 * 155.00195 * 12 11 10 16 16 H 1.08004 * 120.00372 * 95.27906 * 15 12 11 17 17 C 1.37874 * 119.99869 * 275.28183 * 15 12 11 18 18 N 1.31518 * 120.00123 * 5.79978 * 17 15 12 19 19 Si 1.86805 * 120.00218 * 185.80139 * 17 15 12 20 20 H 1.48496 * 109.47184 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.46801 * 299.99937 * 19 17 15 22 22 H 1.48496 * 109.46961 * 59.99477 * 19 17 15 23 23 H 1.08996 * 109.47582 * 59.99095 * 1 2 3 24 24 H 1.08997 * 109.46761 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46852 * 299.99214 * 1 2 3 26 26 H 1.09004 * 109.46852 * 240.00786 * 2 1 3 27 27 H 1.08996 * 109.47582 * 120.00905 * 2 1 3 28 28 H 1.09003 * 110.61899 * 78.43965 * 6 5 3 29 29 H 1.08995 * 110.61848 * 201.28107 * 6 5 3 30 30 H 1.09003 * 110.90775 * 278.82401 * 7 6 5 31 31 H 1.09000 * 110.90515 * 155.21891 * 7 6 5 32 32 H 1.08999 * 109.47192 * 55.00192 * 10 8 3 33 33 H 1.09005 * 109.47050 * 295.00074 * 10 8 3 34 34 H 1.00898 * 111.00325 * 303.95930 * 11 10 8 35 35 H 1.08998 * 109.47207 * 55.17973 * 14 12 11 36 36 H 1.09000 * 109.47134 * 175.17845 * 14 12 11 37 37 H 1.09000 * 109.46661 * 295.17821 * 14 12 11 38 38 H 0.96996 * 120.00186 * 355.09311 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9926 0.8293 5 8 1.7083 2.0783 -1.2458 6 6 2.8401 1.9002 -2.1244 7 6 4.0593 2.1101 -1.1906 8 6 3.5758 1.4553 0.1263 9 1 3.9600 0.4389 0.2128 10 6 4.0071 2.2938 1.3312 11 7 5.4628 2.1936 1.5015 12 6 5.9142 2.9884 2.6515 13 1 5.1583 2.9540 3.4361 14 6 6.1309 4.4389 2.2154 15 6 7.2087 2.4228 3.1760 16 1 8.1509 2.8396 2.8518 17 6 7.1904 1.3732 4.0698 18 7 6.0519 0.7910 4.3772 19 14 8.7828 0.7779 4.8443 20 1 8.4941 -0.3525 5.7629 21 1 9.7125 0.3254 3.7785 22 1 9.4073 1.8882 5.6074 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 2.8462 0.8939 -2.5433 29 1 2.8298 2.6456 -2.9195 30 1 4.2604 3.1717 -1.0462 31 1 4.9396 1.5981 -1.5792 32 1 3.5101 1.9238 2.2280 33 1 3.7314 3.3354 1.1664 34 1 5.7510 1.2309 1.5915 35 1 5.2185 4.8209 1.7576 36 1 6.3827 5.0460 3.0850 37 1 6.9460 4.4831 1.4931 38 1 5.2175 1.1444 4.0313 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300386569.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:35 Heat of formation + Delta-G solvation = -93.362624 kcal Electronic energy + Delta-G solvation = -16469.124917 eV Core-core repulsion = 13923.507203 eV Total energy + Delta-G solvation = -2545.617714 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85197 -37.99113 -34.93243 -34.26687 -33.04064 -30.80865 -29.20439 -26.83737 -25.63618 -23.99156 -22.34093 -21.58027 -21.49858 -18.98280 -17.60932 -17.19020 -16.18824 -15.92993 -15.64548 -15.41082 -15.37582 -14.97937 -14.66125 -13.89165 -13.59402 -13.43555 -13.27927 -12.87200 -12.76739 -12.60592 -12.50858 -12.24930 -12.16370 -11.94684 -11.87799 -11.69810 -11.60870 -11.46832 -10.73130 -10.60634 -10.44268 -9.10663 -8.67507 -6.41546 1.54385 1.60814 1.80882 2.54753 2.95037 3.04447 3.44984 3.67137 3.84658 4.01439 4.13674 4.19249 4.28081 4.36668 4.44065 4.50896 4.60413 4.64528 4.76880 4.80453 4.83886 4.87581 4.92298 4.99681 5.03990 5.05635 5.16423 5.21213 5.31722 5.35673 5.43478 5.85609 5.96594 6.15985 6.46461 6.57810 6.81099 7.39843 8.70116 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033535 B = 0.006361 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.748525 B = 4400.925360 C = 4830.102604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.084 3.916 4 H 0.082 0.918 5 O -0.386 6.386 6 C 0.045 3.955 7 C -0.130 4.130 8 C -0.108 4.108 9 H 0.075 0.925 10 C 0.072 3.928 11 N -0.677 5.677 12 C 0.184 3.816 13 H -0.029 1.029 14 C -0.109 4.109 15 C -0.603 4.603 16 H 0.048 0.952 17 C -0.026 4.026 18 N -0.931 5.931 19 Si 1.117 2.883 20 H -0.286 1.286 21 H -0.271 1.271 22 H -0.272 1.272 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.082 0.918 32 H -0.001 1.001 33 H 0.060 0.940 34 H 0.326 0.674 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 -0.512 -10.490 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.026 3.974 4 H 0.100 0.900 5 O -0.305 6.305 6 C -0.031 4.031 7 C -0.168 4.168 8 C -0.127 4.127 9 H 0.094 0.906 10 C -0.057 4.057 11 N -0.308 5.308 12 C 0.077 3.923 13 H -0.011 1.011 14 C -0.167 4.167 15 C -0.642 4.642 16 H 0.066 0.934 17 C -0.225 4.225 18 N -0.569 5.569 19 Si 0.939 3.061 20 H -0.212 1.212 21 H -0.196 1.196 22 H -0.198 1.198 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.017 0.983 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.481 -1.020 -10.002 11.962 hybrid contribution -0.840 0.580 0.110 1.027 sum -7.321 -0.440 -9.892 12.315 Atomic orbital electron populations 1.21664 0.94383 1.02076 1.01913 1.21997 0.97648 0.95496 1.02527 1.22777 0.93281 0.94121 0.87261 0.90013 1.88839 1.39963 1.77353 1.24345 1.23718 0.83861 1.02196 0.93297 1.22977 0.98718 1.01404 0.93703 1.22503 0.94908 0.99637 0.95678 0.90636 1.21952 0.89799 0.98945 0.95038 1.61084 1.10053 1.15183 1.44469 1.19248 0.93777 0.92344 0.86972 1.01107 1.21525 0.99816 0.95842 0.99565 1.22361 0.93274 1.20670 1.27903 0.93410 1.27317 1.05988 0.94081 0.95083 1.70968 0.98674 1.39708 1.47543 0.82915 0.70949 0.76148 0.76094 1.21174 1.19584 1.19789 0.92432 0.91613 0.93037 0.91097 0.91547 0.91213 0.87465 0.91414 0.89940 0.98260 0.92109 0.85682 0.94052 0.93902 0.93480 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.83 71.98 0.71 -2.39 16 2 C -0.14 -3.43 5.37 30.59 0.16 -3.26 16 3 C 0.08 2.38 3.11 30.97 0.10 2.48 16 4 H 0.08 2.45 7.69 -2.39 -0.02 2.43 16 5 O -0.39 -10.86 10.84 -148.98 -1.62 -12.47 16 6 C 0.05 1.05 7.63 72.67 0.55 1.61 16 7 C -0.13 -3.61 6.60 31.90 0.21 -3.40 16 8 C -0.11 -3.40 2.85 -9.80 -0.03 -3.43 16 9 H 0.08 2.45 7.70 -2.39 -0.02 2.43 16 10 C 0.07 2.81 4.60 86.30 0.40 3.21 16 11 N -0.68 -30.63 6.19 -495.45 -3.07 -33.70 16 12 C 0.18 9.33 2.16 44.17 0.10 9.42 16 13 H -0.03 -1.62 6.62 -2.39 -0.02 -1.63 16 14 C -0.11 -4.79 9.42 71.98 0.68 -4.11 16 15 C -0.60 -33.41 8.29 25.60 0.21 -33.19 16 16 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 17 C -0.03 -1.42 5.45 84.65 0.46 -0.96 16 18 N -0.93 -55.23 13.63 21.45 0.29 -54.94 16 19 Si 1.12 49.18 29.91 68.60 2.05 51.23 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H 0.06 1.26 7.91 -2.39 -0.02 1.24 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.63 7.99 -2.39 -0.02 1.61 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.07 2.03 7.77 -2.39 -0.02 2.02 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.00 -0.03 8.06 -2.39 -0.02 -0.05 16 33 H 0.06 2.34 7.21 -2.38 -0.02 2.32 16 34 H 0.33 16.08 8.35 -89.70 -0.75 15.33 16 35 H 0.04 1.62 7.36 -2.39 -0.02 1.61 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.25 15.32 6.79 -92.71 -0.63 14.69 16 Total: -1.00 -60.45 303.47 1.61 -58.84 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.40 Total: 25.06 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.55 Total: -34.02 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -2.77 Total: -88.64 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.62 Total: -12.47 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.05 Total: 51.23 kcal Total: -60.45 1.61 -58.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300386569.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.522 kcal (2) G-P(sol) polarization free energy of solvation -60.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds