Wall clock time and date at job start Mon Mar 30 2020 03:36:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53007 * 109.46975 * 2 1
4 4 H 1.09001 * 109.08204 * 305.93355 * 3 2 1
5 5 C 1.54429 * 109.03710 * 186.88374 * 3 2 1
6 6 N 1.44809 * 109.06419 * 163.62434 * 5 3 2
7 7 C 1.46899 * 110.99633 * 219.85987 * 6 5 3
8 8 H 1.08999 * 109.47787 * 59.99499 * 7 6 5
9 9 C 1.53002 * 109.46815 * 299.99489 * 7 6 5
10 10 C 1.50704 * 109.46846 * 180.02562 * 7 6 5
11 11 H 1.07992 * 119.99834 * 359.97438 * 10 7 6
12 12 C 1.37877 * 119.99856 * 179.97438 * 10 7 6
13 13 N 1.31513 * 119.99897 * 359.97438 * 12 10 7
14 14 Si 1.86801 * 119.99989 * 179.97438 * 12 10 7
15 15 H 1.48504 * 109.47047 * 90.00038 * 14 12 10
16 16 H 1.48492 * 109.47237 * 209.99657 * 14 12 10
17 17 H 1.48499 * 109.47094 * 330.00284 * 14 12 10
18 18 C 1.48056 * 114.17069 * 93.48293 * 6 5 3
19 19 C 1.53420 * 112.20256 * 318.14032 * 18 6 5
20 20 C 1.51038 * 111.70140 * 318.88052 * 19 18 6
21 21 O 1.36477 * 109.08623 * 65.00322 * 3 2 1
22 22 H 1.08997 * 109.47085 * 299.99061 * 1 2 3
23 23 H 1.09001 * 109.47478 * 60.00194 * 1 2 3
24 24 H 1.09001 * 109.47015 * 179.97438 * 1 2 3
25 25 H 1.09005 * 109.47288 * 240.00753 * 2 1 3
26 26 H 1.08991 * 109.47547 * 120.00601 * 2 1 3
27 27 H 1.09006 * 109.53863 * 283.49268 * 5 3 2
28 28 H 1.08993 * 109.53928 * 43.74617 * 5 3 2
29 29 H 1.09004 * 109.47024 * 180.02562 * 9 7 6
30 30 H 1.09003 * 109.47470 * 299.99991 * 9 7 6
31 31 H 1.08993 * 109.47271 * 60.00387 * 9 7 6
32 32 H 0.97008 * 119.99633 * 180.02562 * 13 12 10
33 33 H 1.09002 * 108.94101 * 78.86201 * 18 6 5
34 34 H 1.09008 * 108.94460 * 197.56556 * 18 6 5
35 35 H 1.08993 * 109.11404 * 198.26519 * 19 18 6
36 36 H 1.09003 * 108.97546 * 79.40602 * 19 18 6
37 37 H 1.09002 * 109.77180 * 332.25751 * 20 19 18
38 38 H 1.08995 * 109.77026 * 211.52450 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5888 1.9800 -0.8341
5 6 3.5743 1.4344 -0.1750
6 7 4.0135 2.7594 -0.5603
7 6 5.0717 2.6883 -1.5767
8 1 4.6929 2.1749 -2.4604
9 6 6.2686 1.9192 -1.0138
10 6 5.5027 4.0830 -1.9515
11 1 5.0367 4.9366 -1.4819
12 6 6.4918 4.2690 -2.8938
13 7 7.0595 3.2294 -3.4652
14 14 7.0256 5.9977 -3.3589
15 1 8.1352 6.4288 -2.4711
16 1 7.4873 6.0103 -4.7701
17 1 5.8785 6.9281 -3.2049
18 6 4.4249 3.6158 0.5752
19 6 3.4772 3.4833 1.7744
20 6 2.0317 3.4260 1.3403
21 8 1.6749 2.0450 1.1689
22 1 -0.3633 0.5137 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8934 -0.5137 -0.8901
26 1 1.8934 -0.5139 0.8898
27 1 4.0471 1.1531 0.7661
28 1 3.8490 0.7194 -0.9504
29 1 7.0540 1.8669 -1.7678
30 1 6.6475 2.4327 -0.1301
31 1 5.9572 0.9106 -0.7424
32 1 7.7557 3.3603 -4.1279
33 1 5.4306 3.3326 0.8858
34 1 4.4355 4.6558 0.2484
35 1 3.6161 4.3388 2.4353
36 1 3.7210 2.5715 2.3197
37 1 1.9086 3.9584 0.3972
38 1 1.3992 3.8782 2.1041
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300871768.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:03
Heat of formation + Delta-G solvation = -48.377360 kcal
Electronic energy + Delta-G solvation = -17058.102806 eV
Core-core repulsion = 14514.435799 eV
Total energy + Delta-G solvation = -2543.667006 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.49697 -36.45357 -33.97459 -32.82873 -31.18778 -29.11860 -26.62859 -25.63117
-25.06832 -22.44485 -20.94813 -20.65017 -18.81324 -16.48433 -16.17692 -15.71733
-14.99758 -14.69892 -14.36804 -13.67121 -13.63290 -13.17400 -12.72791 -12.32913
-12.07746 -11.90244 -11.75295 -11.28084 -11.06729 -10.91228 -10.80017 -10.75204
-10.49662 -10.44259 -10.38149 -10.04335 -9.91989 -9.63665 -8.91870 -8.81225
-8.40563 -7.01826 -6.02337 -4.06470 3.29235 3.36133 3.39687 4.15386
4.39923 4.82869 5.28531 5.29600 5.33196 5.40620 5.50652 5.52394
5.78185 5.83548 5.89939 6.03207 6.05901 6.13499 6.18994 6.25618
6.38285 6.41181 6.51066 6.58474 6.65139 6.73112 6.82791 6.90656
7.13013 7.55713 7.73443 7.84955 8.02264 8.16134 8.39116 8.66840
8.99759 9.59093 11.04748
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.036136 B = 0.007527 C = 0.006942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 774.669158 B = 3718.899002 C = 4032.257632
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.116 4.116
3 C 0.107 3.893
4 H 0.050 0.950
5 C 0.032 3.968
6 N -0.550 5.550
7 C 0.217 3.783
8 H 0.040 0.960
9 C -0.171 4.171
10 C -0.504 4.504
11 H 0.063 0.937
12 C 0.058 3.942
13 N -0.894 5.894
14 Si 0.895 3.105
15 H -0.282 1.282
16 H -0.287 1.287
17 H -0.274 1.274
18 C 0.070 3.930
19 C -0.157 4.157
20 C 0.078 3.922
21 O -0.387 6.387
22 H 0.059 0.941
23 H 0.051 0.949
24 H 0.047 0.953
25 H 0.072 0.928
26 H 0.064 0.936
27 H 0.034 0.966
28 H 0.068 0.932
29 H 0.088 0.912
30 H 0.027 0.973
31 H 0.007 0.993
32 H 0.260 0.740
33 H 0.033 0.967
34 H 0.075 0.925
35 H 0.067 0.933
36 H 0.062 0.938
37 H 0.066 0.934
38 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.446 -2.989 7.628 11.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.154 4.154
3 C 0.047 3.953
4 H 0.068 0.932
5 C -0.098 4.098
6 N -0.274 5.274
7 C 0.111 3.889
8 H 0.058 0.942
9 C -0.230 4.230
10 C -0.542 4.542
11 H 0.081 0.919
12 C -0.143 4.143
13 N -0.533 5.533
14 Si 0.723 3.277
15 H -0.208 1.208
16 H -0.213 1.213
17 H -0.199 1.199
18 C -0.057 4.057
19 C -0.195 4.195
20 C 0.002 3.998
21 O -0.306 6.306
22 H 0.078 0.922
23 H 0.070 0.930
24 H 0.066 0.934
25 H 0.091 0.909
26 H 0.082 0.918
27 H 0.052 0.948
28 H 0.086 0.914
29 H 0.106 0.894
30 H 0.046 0.954
31 H 0.026 0.974
32 H 0.070 0.930
33 H 0.051 0.949
34 H 0.093 0.907
35 H 0.086 0.914
36 H 0.081 0.919
37 H 0.084 0.916
38 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -8.776 -2.903 7.420 11.853
hybrid contribution 1.452 0.658 -0.156 1.602
sum -7.324 -2.245 7.263 10.556
Atomic orbital electron populations
1.21692 0.95722 1.00807 1.02077 1.21576 0.96177 0.95434 1.02186
1.21342 0.94101 0.92551 0.87299 0.93220 1.22602 0.95368 0.92409
0.99400 1.60974 1.42057 1.11590 1.12789 1.19317 0.84898 0.96173
0.88552 0.94236 1.22412 1.03728 0.95840 1.01038 1.21190 1.19004
0.91881 1.22154 0.91921 1.24937 0.96353 0.96897 0.96071 1.69889
1.26502 1.29053 1.27879 0.86539 0.78800 0.84705 0.77614 1.20844
1.21277 1.19871 1.22168 0.95535 0.98914 0.89103 1.22137 0.96663
1.01931 0.98770 1.22258 0.94326 0.82126 1.01047 1.86310 1.79406
1.25404 1.39448 0.92225 0.93008 0.93353 0.90945 0.91764 0.94808
0.91390 0.89388 0.95404 0.97389 0.93012 0.94870 0.90710 0.91444
0.91942 0.91593 0.90259
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.77 9.80 37.16 0.36 -1.40 16
2 C -0.12 -1.60 5.58 -26.73 -0.15 -1.74 16
3 C 0.11 1.78 2.43 -25.98 -0.06 1.71 16
4 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16
5 C 0.03 0.60 3.67 -4.20 -0.02 0.59 16
6 N -0.55 -11.78 3.94 -227.56 -0.90 -12.67 16
7 C 0.22 5.43 2.19 -68.86 -0.15 5.28 16
8 H 0.04 1.10 8.07 -51.93 -0.42 0.68 16
9 C -0.17 -4.17 8.51 37.16 0.32 -3.85 16
10 C -0.50 -13.65 8.00 -34.44 -0.28 -13.92 16
11 H 0.06 1.69 6.20 -52.49 -0.33 1.36 16
12 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16
13 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16
14 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16
15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
18 C 0.07 1.38 4.69 -2.97 -0.01 1.37 16
19 C -0.16 -2.50 5.40 -27.50 -0.15 -2.64 16
20 C 0.08 1.20 6.48 36.17 0.23 1.43 16
21 O -0.39 -6.37 9.12 -21.28 -0.19 -6.57 16
22 H 0.06 0.75 7.81 -51.93 -0.41 0.34 16
23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
25 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16
26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
27 H 0.03 0.64 7.01 -51.93 -0.36 0.28 16
28 H 0.07 1.31 6.89 -51.93 -0.36 0.96 16
29 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16
30 H 0.03 0.66 6.40 -51.93 -0.33 0.33 16
31 H 0.01 0.16 6.90 -51.93 -0.36 -0.20 16
32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16
33 H 0.03 0.70 6.11 -51.93 -0.32 0.38 16
34 H 0.07 1.55 6.51 -51.92 -0.34 1.21 16
35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
36 H 0.06 1.02 7.30 -51.93 -0.38 0.64 16
37 H 0.07 1.10 7.61 -51.93 -0.40 0.70 16
38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
LS Contribution 285.31 15.07 4.30 4.30
Total: -1.00 -27.99 285.31 -7.57 -35.56
By element:
Atomic # 1 Polarization: 6.00 SS G_CDS: -6.39 Total: -0.39 kcal
Atomic # 6 Polarization: -11.67 SS G_CDS: 0.00 Total: -11.67 kcal
Atomic # 7 Polarization: -37.19 SS G_CDS: -0.27 Total: -37.46 kcal
Atomic # 8 Polarization: -6.37 SS G_CDS: -0.19 Total: -6.57 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -27.99 -7.57 -35.56 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300871768.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.819 kcal
(2) G-P(sol) polarization free energy of solvation -27.985 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.805 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.377 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds