Wall clock time and date at job start Mon Mar 30 2020 03:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46975 * 2 1 4 4 H 1.09001 * 109.08204 * 305.93355 * 3 2 1 5 5 C 1.54429 * 109.03710 * 186.88374 * 3 2 1 6 6 N 1.44809 * 109.06419 * 163.62434 * 5 3 2 7 7 C 1.46899 * 110.99633 * 219.85987 * 6 5 3 8 8 H 1.08999 * 109.47787 * 59.99499 * 7 6 5 9 9 C 1.53002 * 109.46815 * 299.99489 * 7 6 5 10 10 C 1.50704 * 109.46846 * 180.02562 * 7 6 5 11 11 H 1.07992 * 119.99834 * 359.97438 * 10 7 6 12 12 C 1.37877 * 119.99856 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99897 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99989 * 179.97438 * 12 10 7 15 15 H 1.48504 * 109.47047 * 90.00038 * 14 12 10 16 16 H 1.48492 * 109.47237 * 209.99657 * 14 12 10 17 17 H 1.48499 * 109.47094 * 330.00284 * 14 12 10 18 18 C 1.48056 * 114.17069 * 93.48293 * 6 5 3 19 19 C 1.53420 * 112.20256 * 318.14032 * 18 6 5 20 20 C 1.51038 * 111.70140 * 318.88052 * 19 18 6 21 21 O 1.36477 * 109.08623 * 65.00322 * 3 2 1 22 22 H 1.08997 * 109.47085 * 299.99061 * 1 2 3 23 23 H 1.09001 * 109.47478 * 60.00194 * 1 2 3 24 24 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47288 * 240.00753 * 2 1 3 26 26 H 1.08991 * 109.47547 * 120.00601 * 2 1 3 27 27 H 1.09006 * 109.53863 * 283.49268 * 5 3 2 28 28 H 1.08993 * 109.53928 * 43.74617 * 5 3 2 29 29 H 1.09004 * 109.47024 * 180.02562 * 9 7 6 30 30 H 1.09003 * 109.47470 * 299.99991 * 9 7 6 31 31 H 1.08993 * 109.47271 * 60.00387 * 9 7 6 32 32 H 0.97008 * 119.99633 * 180.02562 * 13 12 10 33 33 H 1.09002 * 108.94101 * 78.86201 * 18 6 5 34 34 H 1.09008 * 108.94460 * 197.56556 * 18 6 5 35 35 H 1.08993 * 109.11404 * 198.26519 * 19 18 6 36 36 H 1.09003 * 108.97546 * 79.40602 * 19 18 6 37 37 H 1.09002 * 109.77180 * 332.25751 * 20 19 18 38 38 H 1.08995 * 109.77026 * 211.52450 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5888 1.9800 -0.8341 5 6 3.5743 1.4344 -0.1750 6 7 4.0135 2.7594 -0.5603 7 6 5.0717 2.6883 -1.5767 8 1 4.6929 2.1749 -2.4604 9 6 6.2686 1.9192 -1.0138 10 6 5.5027 4.0830 -1.9515 11 1 5.0367 4.9366 -1.4819 12 6 6.4918 4.2690 -2.8938 13 7 7.0595 3.2294 -3.4652 14 14 7.0256 5.9977 -3.3589 15 1 8.1352 6.4288 -2.4711 16 1 7.4873 6.0103 -4.7701 17 1 5.8785 6.9281 -3.2049 18 6 4.4249 3.6158 0.5752 19 6 3.4772 3.4833 1.7744 20 6 2.0317 3.4260 1.3403 21 8 1.6749 2.0450 1.1689 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8898 27 1 4.0471 1.1531 0.7661 28 1 3.8490 0.7194 -0.9504 29 1 7.0540 1.8669 -1.7678 30 1 6.6475 2.4327 -0.1301 31 1 5.9572 0.9106 -0.7424 32 1 7.7557 3.3603 -4.1279 33 1 5.4306 3.3326 0.8858 34 1 4.4355 4.6558 0.2484 35 1 3.6161 4.3388 2.4353 36 1 3.7210 2.5715 2.3197 37 1 1.9086 3.9584 0.3972 38 1 1.3992 3.8782 2.1041 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300871768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:03 Heat of formation + Delta-G solvation = -48.377360 kcal Electronic energy + Delta-G solvation = -17058.102806 eV Core-core repulsion = 14514.435799 eV Total energy + Delta-G solvation = -2543.667006 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.49697 -36.45357 -33.97459 -32.82873 -31.18778 -29.11860 -26.62859 -25.63117 -25.06832 -22.44485 -20.94813 -20.65017 -18.81324 -16.48433 -16.17692 -15.71733 -14.99758 -14.69892 -14.36804 -13.67121 -13.63290 -13.17400 -12.72791 -12.32913 -12.07746 -11.90244 -11.75295 -11.28084 -11.06729 -10.91228 -10.80017 -10.75204 -10.49662 -10.44259 -10.38149 -10.04335 -9.91989 -9.63665 -8.91870 -8.81225 -8.40563 -7.01826 -6.02337 -4.06470 3.29235 3.36133 3.39687 4.15386 4.39923 4.82869 5.28531 5.29600 5.33196 5.40620 5.50652 5.52394 5.78185 5.83548 5.89939 6.03207 6.05901 6.13499 6.18994 6.25618 6.38285 6.41181 6.51066 6.58474 6.65139 6.73112 6.82791 6.90656 7.13013 7.55713 7.73443 7.84955 8.02264 8.16134 8.39116 8.66840 8.99759 9.59093 11.04748 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036136 B = 0.007527 C = 0.006942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.669158 B = 3718.899002 C = 4032.257632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.107 3.893 4 H 0.050 0.950 5 C 0.032 3.968 6 N -0.550 5.550 7 C 0.217 3.783 8 H 0.040 0.960 9 C -0.171 4.171 10 C -0.504 4.504 11 H 0.063 0.937 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.070 3.930 19 C -0.157 4.157 20 C 0.078 3.922 21 O -0.387 6.387 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.027 0.973 31 H 0.007 0.993 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 -2.989 7.628 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.047 3.953 4 H 0.068 0.932 5 C -0.098 4.098 6 N -0.274 5.274 7 C 0.111 3.889 8 H 0.058 0.942 9 C -0.230 4.230 10 C -0.542 4.542 11 H 0.081 0.919 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.723 3.277 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.057 4.057 19 C -0.195 4.195 20 C 0.002 3.998 21 O -0.306 6.306 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.776 -2.903 7.420 11.853 hybrid contribution 1.452 0.658 -0.156 1.602 sum -7.324 -2.245 7.263 10.556 Atomic orbital electron populations 1.21692 0.95722 1.00807 1.02077 1.21576 0.96177 0.95434 1.02186 1.21342 0.94101 0.92551 0.87299 0.93220 1.22602 0.95368 0.92409 0.99400 1.60974 1.42057 1.11590 1.12789 1.19317 0.84898 0.96173 0.88552 0.94236 1.22412 1.03728 0.95840 1.01038 1.21190 1.19004 0.91881 1.22154 0.91921 1.24937 0.96353 0.96897 0.96071 1.69889 1.26502 1.29053 1.27879 0.86539 0.78800 0.84705 0.77614 1.20844 1.21277 1.19871 1.22168 0.95535 0.98914 0.89103 1.22137 0.96663 1.01931 0.98770 1.22258 0.94326 0.82126 1.01047 1.86310 1.79406 1.25404 1.39448 0.92225 0.93008 0.93353 0.90945 0.91764 0.94808 0.91390 0.89388 0.95404 0.97389 0.93012 0.94870 0.90710 0.91444 0.91942 0.91593 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.80 37.16 0.36 -1.40 16 2 C -0.12 -1.60 5.58 -26.73 -0.15 -1.74 16 3 C 0.11 1.78 2.43 -25.98 -0.06 1.71 16 4 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 5 C 0.03 0.60 3.67 -4.20 -0.02 0.59 16 6 N -0.55 -11.78 3.94 -227.56 -0.90 -12.67 16 7 C 0.22 5.43 2.19 -68.86 -0.15 5.28 16 8 H 0.04 1.10 8.07 -51.93 -0.42 0.68 16 9 C -0.17 -4.17 8.51 37.16 0.32 -3.85 16 10 C -0.50 -13.65 8.00 -34.44 -0.28 -13.92 16 11 H 0.06 1.69 6.20 -52.49 -0.33 1.36 16 12 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 13 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 14 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.07 1.38 4.69 -2.97 -0.01 1.37 16 19 C -0.16 -2.50 5.40 -27.50 -0.15 -2.64 16 20 C 0.08 1.20 6.48 36.17 0.23 1.43 16 21 O -0.39 -6.37 9.12 -21.28 -0.19 -6.57 16 22 H 0.06 0.75 7.81 -51.93 -0.41 0.34 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.64 7.01 -51.93 -0.36 0.28 16 28 H 0.07 1.31 6.89 -51.93 -0.36 0.96 16 29 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 30 H 0.03 0.66 6.40 -51.93 -0.33 0.33 16 31 H 0.01 0.16 6.90 -51.93 -0.36 -0.20 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.03 0.70 6.11 -51.93 -0.32 0.38 16 34 H 0.07 1.55 6.51 -51.92 -0.34 1.21 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.02 7.30 -51.93 -0.38 0.64 16 37 H 0.07 1.10 7.61 -51.93 -0.40 0.70 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 285.31 15.07 4.30 4.30 Total: -1.00 -27.99 285.31 -7.57 -35.56 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.39 Total: -0.39 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.00 Total: -11.67 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.27 Total: -37.46 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.19 Total: -6.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.99 -7.57 -35.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300871768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.819 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds