Wall clock time and date at job start Mon Mar 30 2020 03:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46984 * 2 1 4 4 H 1.08995 * 109.10602 * 55.86479 * 3 2 1 5 5 C 1.46260 * 109.11238 * 175.00027 * 3 2 1 6 6 N 1.47801 * 112.31611 * 179.97438 * 5 3 2 7 7 C 1.46897 * 110.99858 * 155.82094 * 6 5 3 8 8 H 1.08999 * 109.47015 * 55.00604 * 7 6 5 9 9 C 1.53001 * 109.47437 * 295.00342 * 7 6 5 10 10 C 1.50703 * 109.47073 * 175.00285 * 7 6 5 11 11 H 1.07998 * 119.99954 * 5.54076 * 10 7 6 12 12 C 1.37871 * 119.99925 * 185.53699 * 10 7 6 13 13 N 1.31519 * 120.00285 * 8.77614 * 12 10 7 14 14 Si 1.86805 * 119.99922 * 188.77186 * 12 10 7 15 15 H 1.48498 * 109.46921 * 84.99918 * 14 12 10 16 16 H 1.48506 * 109.47311 * 204.99515 * 14 12 10 17 17 H 1.48497 * 109.47127 * 324.99550 * 14 12 10 18 18 C 1.44010 * 109.44533 * 278.68759 * 6 5 3 19 19 C 1.54614 * 112.48054 * 94.32334 * 18 6 5 20 20 C 1.54579 * 110.90266 * 319.61596 * 19 18 6 21 21 O 1.39914 * 113.22473 * 319.28561 * 20 19 18 22 22 H 1.09002 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46847 * 299.99714 * 1 2 3 24 24 H 1.08989 * 109.47180 * 60.00086 * 1 2 3 25 25 H 1.09000 * 109.46697 * 239.99592 * 2 1 3 26 26 H 1.09000 * 109.46716 * 120.00031 * 2 1 3 27 27 H 1.08993 * 108.91842 * 300.68509 * 5 3 2 28 28 H 1.08999 * 108.91372 * 59.31847 * 5 3 2 29 29 H 1.09005 * 109.46857 * 305.70662 * 9 7 6 30 30 H 1.08997 * 109.47129 * 65.70672 * 9 7 6 31 31 H 1.09001 * 109.47015 * 185.70687 * 9 7 6 32 32 H 0.96997 * 119.99915 * 179.97438 * 13 12 10 33 33 H 1.09007 * 108.87572 * 215.09662 * 18 6 5 34 34 H 1.09000 * 108.88376 * 333.54297 * 18 6 5 35 35 H 1.08998 * 109.19274 * 79.98513 * 19 18 6 36 36 H 1.09010 * 109.19366 * 199.29345 * 19 18 6 37 37 H 1.09000 * 108.73412 * 80.25212 * 20 19 18 38 38 H 1.08996 * 108.73336 * 198.32390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6140 1.9715 0.8525 5 6 3.4976 1.4351 0.1204 6 7 4.0671 2.7990 0.1270 7 6 5.3737 2.8206 0.7980 8 1 6.0349 2.0916 0.3295 9 6 5.1938 2.4698 2.2764 10 6 5.9773 4.1963 0.6780 11 1 5.4071 4.9994 0.2350 12 6 7.2574 4.4295 1.1339 13 7 8.0141 3.4229 1.5132 14 14 7.9172 6.1754 1.2126 15 1 7.4999 6.8050 2.4911 16 1 9.4000 6.1482 1.1351 17 1 7.3764 6.9607 0.0742 18 6 4.1736 3.2806 -1.2260 19 6 2.9465 4.1184 -1.6536 20 6 1.6377 3.4900 -1.1229 21 8 1.6173 2.0943 -1.2187 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7730 0.9331 1.0479 28 1 3.9187 0.8816 -0.7189 29 1 4.4549 3.1368 2.7207 30 1 4.8528 1.4385 2.3662 31 1 6.1454 2.5844 2.7954 32 1 8.9148 3.5870 1.8336 33 1 5.0687 3.8969 -1.3115 34 1 4.2697 2.4275 -1.8976 35 1 3.0460 5.1284 -1.2560 36 1 2.9056 4.1644 -2.7419 37 1 1.5134 3.7710 -0.0771 38 1 0.8001 3.8922 -1.6928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300871770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:05 Heat of formation + Delta-G solvation = -47.643696 kcal Electronic energy + Delta-G solvation = -17046.076521 eV Core-core repulsion = 14502.441329 eV Total energy + Delta-G solvation = -2543.635192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.33886 -36.22715 -34.16529 -32.82226 -31.03729 -29.48770 -27.34894 -25.54681 -24.47015 -22.40255 -20.74133 -20.39510 -19.23983 -16.51766 -16.30791 -15.67867 -14.83442 -14.57538 -14.25233 -13.82571 -13.36303 -13.19581 -12.75035 -12.74367 -12.08912 -11.83196 -11.70115 -11.37112 -11.02004 -10.96898 -10.74350 -10.61174 -10.55452 -10.39023 -10.20449 -10.16425 -9.79444 -9.55484 -9.01165 -8.86071 -8.46501 -7.21809 -6.06699 -4.07462 3.29810 3.36117 3.38719 4.18142 4.38261 4.76863 5.24397 5.26088 5.32318 5.40749 5.59843 5.64418 5.73448 5.81745 5.92622 6.00699 6.04389 6.08618 6.19756 6.27799 6.33802 6.44737 6.50420 6.55638 6.72396 6.76526 6.89817 7.01151 7.11311 7.45503 7.71145 7.74742 7.80760 8.13993 8.32215 8.57763 9.00306 9.56175 11.02405 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039990 B = 0.007624 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.001408 B = 3671.939173 C = 4146.339264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.099 3.901 4 H 0.061 0.939 5 C 0.019 3.981 6 N -0.527 5.527 7 C 0.210 3.790 8 H 0.006 0.994 9 C -0.125 4.125 10 C -0.508 4.508 11 H 0.064 0.936 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.893 3.107 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.274 1.274 18 C 0.057 3.943 19 C -0.138 4.138 20 C 0.074 3.926 21 O -0.375 6.375 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.036 0.964 30 H 0.011 0.989 31 H 0.068 0.932 32 H 0.261 0.739 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -3.565 -2.711 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C 0.041 3.959 4 H 0.079 0.921 5 C -0.110 4.110 6 N -0.251 5.251 7 C 0.105 3.895 8 H 0.023 0.977 9 C -0.183 4.183 10 C -0.546 4.546 11 H 0.082 0.918 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.072 4.072 19 C -0.176 4.176 20 C -0.004 4.004 21 O -0.294 6.294 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.038 0.962 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.230 -3.387 -2.528 11.999 hybrid contribution 1.173 0.583 -0.115 1.315 sum -10.058 -2.804 -2.643 10.770 Atomic orbital electron populations 1.21688 0.95548 1.00963 1.02115 1.21590 0.96414 0.95318 1.02437 1.21220 0.94491 0.93130 0.87022 0.92052 1.21710 0.95234 0.92645 1.01371 1.61601 1.28672 1.18641 1.16184 1.19305 0.82792 0.96923 0.90523 0.97655 1.21754 1.01204 0.96035 0.99303 1.21088 0.98551 0.95054 1.39927 0.91799 1.24933 0.96563 0.96980 0.95541 1.69970 1.08775 1.30177 1.43978 0.86587 0.77699 0.84955 0.78623 1.20537 1.21408 1.19946 1.21815 0.98165 0.98220 0.89014 1.22678 0.95816 0.99833 0.99311 1.22049 0.96254 0.81464 1.00586 1.87636 1.86821 1.18584 1.36383 0.93213 0.93091 0.92063 0.91450 0.90890 0.90496 0.94981 0.94520 0.97010 0.91308 0.92914 0.89291 0.96165 0.91528 0.92797 0.93049 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.79 37.16 0.36 -1.31 16 2 C -0.12 -1.57 5.58 -26.73 -0.15 -1.72 16 3 C 0.10 1.59 2.32 -29.94 -0.07 1.53 16 4 H 0.06 1.01 7.46 -51.93 -0.39 0.62 16 5 C 0.02 0.35 4.20 -6.53 -0.03 0.32 16 6 N -0.53 -11.41 4.11 -232.56 -0.95 -12.37 16 7 C 0.21 5.28 1.87 -68.86 -0.13 5.16 16 8 H 0.01 0.16 8.08 -51.93 -0.42 -0.26 16 9 C -0.12 -2.98 8.93 37.16 0.33 -2.64 16 10 C -0.51 -13.74 7.14 -34.44 -0.25 -13.98 16 11 H 0.06 1.73 6.96 -52.49 -0.37 1.37 16 12 C 0.06 1.69 5.16 -17.82 -0.09 1.60 16 13 N -0.89 -25.40 12.13 55.43 0.67 -24.72 16 14 Si 0.89 21.18 29.55 -169.99 -5.02 16.16 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.06 1.19 4.87 -4.52 -0.02 1.17 16 19 C -0.14 -2.39 6.52 -25.05 -0.16 -2.56 16 20 C 0.07 1.20 6.20 37.99 0.24 1.44 16 21 O -0.38 -6.37 9.47 -32.70 -0.31 -6.68 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.74 7.75 -51.94 -0.40 0.34 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 27 H 0.08 1.43 5.80 -51.93 -0.30 1.13 16 28 H 0.03 0.62 7.30 -51.93 -0.38 0.24 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.01 0.24 6.40 -51.93 -0.33 -0.09 16 31 H 0.07 1.79 6.77 -51.93 -0.35 1.44 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.09 2.05 5.70 -51.92 -0.30 1.76 16 34 H 0.02 0.42 7.11 -51.93 -0.37 0.05 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.05 0.86 7.25 -51.93 -0.38 0.48 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -28.16 289.16 -7.72 -35.88 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.50 Total: -1.61 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 0.03 Total: -11.00 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.28 Total: -37.09 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.31 Total: -6.68 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.16 -7.72 -35.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300871770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.768 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds