Wall clock time and date at job start Mon Mar 30 2020 03:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46984 * 2 1 4 4 H 1.08995 * 109.10602 * 55.86479 * 3 2 1 5 5 C 1.46260 * 109.11238 * 175.00027 * 3 2 1 6 6 N 1.47801 * 112.31611 * 179.97438 * 5 3 2 7 7 C 1.46897 * 110.99858 * 155.82094 * 6 5 3 8 8 H 1.08999 * 109.47015 * 55.00604 * 7 6 5 9 9 C 1.53001 * 109.47437 * 295.00342 * 7 6 5 10 10 C 1.50703 * 109.47073 * 175.00285 * 7 6 5 11 11 H 1.07998 * 119.99954 * 5.54076 * 10 7 6 12 12 C 1.37871 * 119.99925 * 185.53699 * 10 7 6 13 13 N 1.31519 * 120.00285 * 8.77614 * 12 10 7 14 14 Si 1.86805 * 119.99922 * 188.77186 * 12 10 7 15 15 H 1.48498 * 109.46921 * 84.99918 * 14 12 10 16 16 H 1.48506 * 109.47311 * 204.99515 * 14 12 10 17 17 H 1.48497 * 109.47127 * 324.99550 * 14 12 10 18 18 C 1.44010 * 109.44533 * 278.68759 * 6 5 3 19 19 C 1.54614 * 112.48054 * 94.32334 * 18 6 5 20 20 C 1.54579 * 110.90266 * 319.61596 * 19 18 6 21 21 O 1.39914 * 113.22473 * 319.28561 * 20 19 18 22 22 H 1.09002 * 109.46938 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46847 * 299.99714 * 1 2 3 24 24 H 1.08989 * 109.47180 * 60.00086 * 1 2 3 25 25 H 1.09000 * 109.46697 * 239.99592 * 2 1 3 26 26 H 1.09000 * 109.46716 * 120.00031 * 2 1 3 27 27 H 1.08993 * 108.91842 * 300.68509 * 5 3 2 28 28 H 1.08999 * 108.91372 * 59.31847 * 5 3 2 29 29 H 1.09005 * 109.46857 * 305.70662 * 9 7 6 30 30 H 1.08997 * 109.47129 * 65.70672 * 9 7 6 31 31 H 1.09001 * 109.47015 * 185.70687 * 9 7 6 32 32 H 0.96997 * 119.99915 * 179.97438 * 13 12 10 33 33 H 1.09007 * 108.87572 * 215.09662 * 18 6 5 34 34 H 1.09000 * 108.88376 * 333.54297 * 18 6 5 35 35 H 1.08998 * 109.19274 * 79.98513 * 19 18 6 36 36 H 1.09010 * 109.19366 * 199.29345 * 19 18 6 37 37 H 1.09000 * 108.73412 * 80.25212 * 20 19 18 38 38 H 1.08996 * 108.73336 * 198.32390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6140 1.9715 0.8525 5 6 3.4976 1.4351 0.1204 6 7 4.0671 2.7990 0.1270 7 6 5.3737 2.8206 0.7980 8 1 6.0349 2.0916 0.3295 9 6 5.1938 2.4698 2.2764 10 6 5.9773 4.1963 0.6780 11 1 5.4071 4.9994 0.2350 12 6 7.2574 4.4295 1.1339 13 7 8.0141 3.4229 1.5132 14 14 7.9172 6.1754 1.2126 15 1 7.4999 6.8050 2.4911 16 1 9.4000 6.1482 1.1351 17 1 7.3764 6.9607 0.0742 18 6 4.1736 3.2806 -1.2260 19 6 2.9465 4.1184 -1.6536 20 6 1.6377 3.4900 -1.1229 21 8 1.6173 2.0943 -1.2187 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7730 0.9331 1.0479 28 1 3.9187 0.8816 -0.7189 29 1 4.4549 3.1368 2.7207 30 1 4.8528 1.4385 2.3662 31 1 6.1454 2.5844 2.7954 32 1 8.9148 3.5870 1.8336 33 1 5.0687 3.8969 -1.3115 34 1 4.2697 2.4275 -1.8976 35 1 3.0460 5.1284 -1.2560 36 1 2.9056 4.1644 -2.7419 37 1 1.5134 3.7710 -0.0771 38 1 0.8001 3.8922 -1.6928 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300871770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:05 Heat of formation + Delta-G solvation = -65.110465 kcal Electronic energy + Delta-G solvation = -17046.833937 eV Core-core repulsion = 14502.441329 eV Total energy + Delta-G solvation = -2544.392608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79756 -37.89164 -35.37653 -34.80091 -32.53300 -31.15339 -28.89081 -27.35763 -26.12604 -23.78214 -22.13817 -21.91287 -20.98063 -18.35959 -17.91707 -17.23429 -16.38314 -16.18818 -15.89207 -15.24844 -14.81012 -14.57966 -14.36733 -14.28588 -13.83198 -13.20542 -13.03207 -12.89687 -12.77006 -12.59583 -12.46155 -12.28097 -12.04580 -12.03573 -11.79168 -11.71810 -11.30498 -11.15602 -10.84099 -10.57884 -10.36739 -9.02548 -8.17080 -6.24467 1.40957 1.42509 1.51399 2.40472 2.92120 3.13567 3.21015 4.00376 4.09299 4.20191 4.27187 4.33460 4.40345 4.45886 4.59499 4.64758 4.75729 4.81520 4.91115 4.95939 5.00348 5.04474 5.11436 5.15219 5.16867 5.21176 5.29531 5.31208 5.46322 5.50528 5.69348 5.74818 6.17393 6.38275 6.47326 6.68582 6.91825 7.43160 8.91930 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039990 B = 0.007624 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.001408 B = 3671.939173 C = 4146.339264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.101 3.899 4 H 0.063 0.937 5 C 0.021 3.979 6 N -0.527 5.527 7 C 0.214 3.786 8 H -0.036 1.036 9 C -0.112 4.112 10 C -0.519 4.519 11 H 0.059 0.941 12 C 0.014 3.986 13 N -0.921 5.921 14 Si 0.957 3.043 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.058 3.942 19 C -0.132 4.132 20 C 0.074 3.926 21 O -0.381 6.381 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.021 0.979 29 H 0.041 0.959 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.059 0.941 34 H 0.013 0.987 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 -3.214 -2.774 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.043 3.957 4 H 0.081 0.919 5 C -0.107 4.107 6 N -0.250 5.250 7 C 0.107 3.893 8 H -0.018 1.018 9 C -0.171 4.171 10 C -0.557 4.557 11 H 0.078 0.922 12 C -0.185 4.185 13 N -0.561 5.561 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.071 4.071 19 C -0.171 4.171 20 C -0.004 4.004 21 O -0.300 6.300 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.977 -3.037 -2.600 13.579 hybrid contribution 1.720 0.426 -0.142 1.778 sum -11.257 -2.610 -2.743 11.876 Atomic orbital electron populations 1.21645 0.93915 1.02214 1.02004 1.21598 0.97775 0.93062 1.02960 1.21256 0.92354 0.95130 0.86943 0.91867 1.21820 0.97069 0.90816 1.00958 1.61664 1.26396 1.20517 1.16463 1.19133 0.83773 0.95033 0.91336 1.01804 1.21566 0.99968 0.97547 0.97987 1.21328 0.98920 0.95740 1.39756 0.92243 1.25698 0.96855 1.00717 0.95226 1.70087 1.09062 1.32116 1.44810 0.85584 0.77004 0.80325 0.78830 1.19878 1.21132 1.19308 1.21817 0.98917 0.97875 0.88536 1.22646 0.94855 0.99091 1.00503 1.22130 0.96290 0.81180 1.00756 1.87647 1.86565 1.19000 1.36795 0.91325 0.92536 0.92815 0.91746 0.89610 0.90416 0.96054 0.94028 0.94777 0.93825 0.92879 0.92298 0.96904 0.91526 0.90960 0.93595 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.79 71.98 0.71 -2.11 16 2 C -0.12 -2.78 5.58 30.60 0.17 -2.61 16 3 C 0.10 3.07 2.32 28.52 0.07 3.14 16 4 H 0.06 1.94 7.46 -2.39 -0.02 1.92 16 5 C 0.02 0.79 4.20 84.05 0.35 1.14 16 6 N -0.53 -22.91 4.11 -889.69 -3.65 -26.56 16 7 C 0.21 11.00 1.87 44.17 0.08 11.09 16 8 H -0.04 -2.09 8.08 -2.39 -0.02 -2.11 16 9 C -0.11 -5.40 8.93 71.98 0.64 -4.76 16 10 C -0.52 -28.59 7.14 25.60 0.18 -28.41 16 11 H 0.06 3.26 6.96 -2.91 -0.02 3.24 16 12 C 0.01 0.78 5.16 84.65 0.44 1.22 16 13 N -0.92 -53.64 12.13 21.45 0.26 -53.38 16 14 Si 0.96 43.67 29.55 68.60 2.03 45.70 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 C 0.06 2.43 4.87 87.39 0.43 2.85 16 19 C -0.13 -4.42 6.52 31.68 0.21 -4.21 16 20 C 0.07 2.22 6.20 72.52 0.45 2.67 16 21 O -0.38 -12.14 9.47 -139.92 -1.32 -13.47 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 1.84 8.12 -2.39 -0.02 1.82 16 27 H 0.08 2.84 5.80 -2.39 -0.01 2.83 16 28 H 0.02 0.83 7.30 -2.39 -0.02 0.82 16 29 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.03 1.43 6.40 -2.39 -0.02 1.42 16 31 H 0.04 2.29 6.77 -2.39 -0.02 2.28 16 32 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 33 H 0.06 2.80 5.70 -2.38 -0.01 2.79 16 34 H 0.01 0.54 7.11 -2.39 -0.02 0.52 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.05 1.43 7.25 -2.39 -0.02 1.41 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -60.51 289.16 2.04 -58.47 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.01 Total: 9.21 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 3.72 Total: -19.98 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -3.39 Total: -79.93 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.32 Total: -13.47 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -60.51 2.04 -58.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300871770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.637 kcal (2) G-P(sol) polarization free energy of solvation -60.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds