Wall clock time and date at job start Mon Mar 30 2020 03:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47493 * 2 1 4 4 H 1.09002 * 109.52900 * 305.14750 * 3 2 1 5 5 C 1.54272 * 109.52928 * 185.00141 * 3 2 1 6 6 N 1.40444 * 111.68805 * 162.88190 * 5 3 2 7 7 C 1.46900 * 110.99871 * 188.30009 * 6 5 3 8 8 H 1.08997 * 109.47656 * 299.99724 * 7 6 5 9 9 C 1.53001 * 109.46971 * 60.00194 * 7 6 5 10 10 C 1.50699 * 109.46724 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00803 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 7 6 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.47636 * 114.31642 * 61.81196 * 6 5 3 19 19 C 1.50895 * 108.76698 * 279.99814 * 18 6 5 20 20 C 1.53629 * 111.71446 * 91.01298 * 19 18 6 21 21 O 1.40631 * 109.52381 * 65.35758 * 3 2 1 22 22 H 1.08995 * 109.47549 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46786 * 299.99890 * 1 2 3 24 24 H 1.09006 * 109.47265 * 59.99029 * 1 2 3 25 25 H 1.09001 * 109.46953 * 240.00638 * 2 1 3 26 26 H 1.08994 * 109.47134 * 120.00584 * 2 1 3 27 27 H 1.09002 * 109.03560 * 42.31356 * 5 3 2 28 28 H 1.09004 * 108.98074 * 283.41000 * 5 3 2 29 29 H 1.09002 * 109.47140 * 179.97438 * 9 7 6 30 30 H 1.09002 * 109.47215 * 299.99593 * 9 7 6 31 31 H 1.08995 * 109.47372 * 60.00095 * 9 7 6 32 32 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.58782 * 39.78398 * 18 6 5 34 34 H 1.08998 * 109.58934 * 160.21867 * 18 6 5 35 35 H 1.08995 * 109.03426 * 330.43587 * 19 18 6 36 36 H 1.08998 * 108.97200 * 211.54708 * 19 18 6 37 37 H 1.08996 * 108.86413 * 197.84696 * 20 19 18 38 38 H 1.08992 * 108.78816 * 79.37233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6040 1.9832 -0.8400 5 6 3.5776 1.4458 -0.1268 6 7 4.0636 2.7047 -0.5157 7 6 5.4989 2.6432 -0.8222 8 1 6.0456 2.3155 0.0620 9 6 5.7346 1.6522 -1.9639 10 6 5.9833 4.0091 -1.2353 11 1 5.2940 4.8400 -1.2666 12 6 7.3066 4.1982 -1.5733 13 7 7.7295 5.3904 -1.9334 14 14 8.4988 2.7611 -1.5199 15 1 8.5161 2.0829 -2.8410 16 1 8.0671 1.7984 -0.4749 17 1 9.8609 3.2595 -1.2014 18 6 3.7730 3.7907 0.4413 19 6 2.3495 4.2485 0.2386 20 6 1.3709 3.4764 1.1366 21 8 1.6757 2.0698 1.2047 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8747 0.7051 -0.8692 28 1 4.0133 1.1784 0.8360 29 1 6.7996 1.6069 -2.1916 30 1 5.3841 0.6641 -1.6655 31 1 5.1880 1.9799 -2.8481 32 1 8.6603 5.5233 -2.1715 33 1 3.8972 3.4231 1.4598 34 1 4.4533 4.6241 0.2658 35 1 2.0718 4.0949 -0.8042 36 1 2.2825 5.3112 0.4712 37 1 0.3612 3.5996 0.7450 38 1 1.4121 3.8951 2.1420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300871774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:08 Heat of formation + Delta-G solvation = -37.434344 kcal Electronic energy + Delta-G solvation = -17074.407082 eV Core-core repulsion = 14531.214600 eV Total energy + Delta-G solvation = -2543.192482 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45482 -36.52823 -34.02062 -32.81749 -31.54107 -30.00176 -27.32527 -25.92404 -24.55924 -22.46255 -21.03029 -19.99491 -19.38139 -16.96015 -16.53029 -15.86874 -14.93644 -14.88619 -14.24803 -13.88541 -13.85536 -13.35517 -13.03137 -12.52648 -12.25758 -12.10508 -11.83046 -11.75317 -11.57299 -11.03162 -10.90287 -10.76554 -10.63882 -10.50561 -10.26448 -9.98501 -9.85908 -9.50444 -9.01348 -8.94496 -8.57180 -7.24957 -6.08907 -4.07352 3.25591 3.36187 3.38009 4.00005 4.38444 4.70315 5.05816 5.18986 5.23767 5.27932 5.35721 5.44576 5.61860 5.63416 5.78803 5.85214 5.95986 6.00571 6.11814 6.16464 6.22676 6.25862 6.34393 6.40367 6.47184 6.52598 6.57145 6.78780 6.81707 6.97453 7.32438 7.59330 7.71710 8.03248 8.25981 8.71257 8.95995 9.53290 11.03488 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.008065 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.411894 B = 3471.113449 C = 3995.450124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.097 3.903 4 H 0.064 0.936 5 C 0.046 3.954 6 N -0.543 5.543 7 C 0.187 3.813 8 H -0.003 1.003 9 C -0.147 4.147 10 C -0.508 4.508 11 H 0.085 0.915 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.886 3.114 15 H -0.279 1.279 16 H -0.269 1.269 17 H -0.297 1.297 18 C 0.065 3.935 19 C -0.152 4.152 20 C 0.067 3.933 21 O -0.387 6.387 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.016 0.984 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.060 0.940 32 H 0.264 0.736 33 H 0.027 0.973 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 -7.680 3.988 14.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.082 0.918 5 C -0.084 4.084 6 N -0.267 5.267 7 C 0.080 3.920 8 H 0.015 0.985 9 C -0.204 4.204 10 C -0.546 4.546 11 H 0.103 0.897 12 C -0.132 4.132 13 N -0.537 5.537 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.194 1.194 17 H -0.225 1.225 18 C -0.061 4.061 19 C -0.190 4.190 20 C -0.009 4.009 21 O -0.307 6.307 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.666 -7.558 3.698 14.384 hybrid contribution 1.209 -0.755 0.355 1.469 sum -10.458 -8.313 4.053 13.961 Atomic orbital electron populations 1.21700 0.95703 1.01095 1.01947 1.21608 0.96137 0.95620 1.02414 1.22050 0.93993 0.92748 0.87395 0.91766 1.21631 0.94710 0.93284 0.98781 1.59038 1.18149 1.04038 1.45482 1.19608 0.83102 0.96474 0.92824 0.98515 1.22235 0.99751 0.97324 1.01102 1.21017 0.94850 0.93442 1.45248 0.89724 1.24928 0.98022 0.95514 0.94686 1.69880 1.16321 1.21605 1.45912 0.86879 0.79976 0.82878 0.78563 1.20557 1.19438 1.22497 1.21761 0.95475 0.96208 0.92704 1.22058 0.96283 0.99678 1.00987 1.22909 0.96679 0.80993 1.00346 1.87408 1.88461 1.22044 1.32742 0.93081 0.92279 0.93091 0.90869 0.91485 0.90525 0.96595 0.94049 0.95169 0.92064 0.92612 0.95516 0.87840 0.90678 0.91080 0.93982 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.53 5.60 -26.73 -0.15 -1.68 16 3 C 0.10 1.51 2.23 -26.07 -0.06 1.45 16 4 H 0.06 1.03 7.11 -51.93 -0.37 0.66 16 5 C 0.05 0.85 4.36 -6.50 -0.03 0.82 16 6 N -0.54 -11.39 3.98 -232.96 -0.93 -12.32 16 7 C 0.19 4.47 1.70 -68.86 -0.12 4.36 16 8 H 0.00 -0.07 7.20 -51.93 -0.37 -0.44 16 9 C -0.15 -3.24 8.41 37.16 0.31 -2.93 16 10 C -0.51 -14.02 8.15 -34.44 -0.28 -14.30 16 11 H 0.08 2.51 6.63 -52.49 -0.35 2.16 16 12 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 13 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 14 Si 0.89 22.00 24.37 -169.99 -4.14 17.86 16 15 H -0.28 -6.74 6.87 56.52 0.39 -6.35 16 16 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 17 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 18 C 0.07 1.30 5.05 -4.48 -0.02 1.28 16 19 C -0.15 -2.45 5.41 -27.46 -0.15 -2.60 16 20 C 0.07 0.95 6.72 37.48 0.25 1.21 16 21 O -0.39 -6.24 9.30 -34.28 -0.32 -6.56 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.69 7.84 -51.93 -0.41 0.28 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.35 5.50 -51.93 -0.29 1.06 16 28 H 0.02 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 30 H 0.03 0.57 6.23 -51.93 -0.32 0.25 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.03 0.53 7.64 -51.93 -0.40 0.13 16 34 H 0.10 2.32 5.49 -51.93 -0.29 2.04 16 35 H 0.07 1.28 7.39 -51.93 -0.38 0.90 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 280.74 15.07 4.23 4.23 Total: -1.00 -29.51 280.74 -6.68 -36.19 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.32 Total: -1.28 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.03 Total: -11.76 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.15 Total: -38.68 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.32 Total: -6.56 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.51 -6.68 -36.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300871774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.243 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds