Wall clock time and date at job start Mon Mar 30 2020 03:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47493 * 2 1 4 4 H 1.09002 * 109.52900 * 305.14750 * 3 2 1 5 5 C 1.54272 * 109.52928 * 185.00141 * 3 2 1 6 6 N 1.40444 * 111.68805 * 162.88190 * 5 3 2 7 7 C 1.46900 * 110.99871 * 188.30009 * 6 5 3 8 8 H 1.08997 * 109.47656 * 299.99724 * 7 6 5 9 9 C 1.53001 * 109.46971 * 60.00194 * 7 6 5 10 10 C 1.50699 * 109.46724 * 179.97438 * 7 6 5 11 11 H 1.07999 * 120.00803 * 0.02562 * 10 7 6 12 12 C 1.37881 * 119.99889 * 180.02562 * 10 7 6 13 13 N 1.31520 * 120.00186 * 180.02562 * 12 10 7 14 14 Si 1.86798 * 120.00030 * 0.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 89.99863 * 14 12 10 16 16 H 1.48503 * 109.47261 * 330.00044 * 14 12 10 17 17 H 1.48500 * 109.47454 * 210.00037 * 14 12 10 18 18 C 1.47636 * 114.31642 * 61.81196 * 6 5 3 19 19 C 1.50895 * 108.76698 * 279.99814 * 18 6 5 20 20 C 1.53629 * 111.71446 * 91.01298 * 19 18 6 21 21 O 1.40631 * 109.52381 * 65.35758 * 3 2 1 22 22 H 1.08995 * 109.47549 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46786 * 299.99890 * 1 2 3 24 24 H 1.09006 * 109.47265 * 59.99029 * 1 2 3 25 25 H 1.09001 * 109.46953 * 240.00638 * 2 1 3 26 26 H 1.08994 * 109.47134 * 120.00584 * 2 1 3 27 27 H 1.09002 * 109.03560 * 42.31356 * 5 3 2 28 28 H 1.09004 * 108.98074 * 283.41000 * 5 3 2 29 29 H 1.09002 * 109.47140 * 179.97438 * 9 7 6 30 30 H 1.09002 * 109.47215 * 299.99593 * 9 7 6 31 31 H 1.08995 * 109.47372 * 60.00095 * 9 7 6 32 32 H 0.96998 * 120.00124 * 180.02562 * 13 12 10 33 33 H 1.08995 * 109.58782 * 39.78398 * 18 6 5 34 34 H 1.08998 * 109.58934 * 160.21867 * 18 6 5 35 35 H 1.08995 * 109.03426 * 330.43587 * 19 18 6 36 36 H 1.08998 * 108.97200 * 211.54708 * 19 18 6 37 37 H 1.08996 * 108.86413 * 197.84696 * 20 19 18 38 38 H 1.08992 * 108.78816 * 79.37233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6040 1.9832 -0.8400 5 6 3.5776 1.4458 -0.1268 6 7 4.0636 2.7047 -0.5157 7 6 5.4989 2.6432 -0.8222 8 1 6.0456 2.3155 0.0620 9 6 5.7346 1.6522 -1.9639 10 6 5.9833 4.0091 -1.2353 11 1 5.2940 4.8400 -1.2666 12 6 7.3066 4.1982 -1.5733 13 7 7.7295 5.3904 -1.9334 14 14 8.4988 2.7611 -1.5199 15 1 8.5161 2.0829 -2.8410 16 1 8.0671 1.7984 -0.4749 17 1 9.8609 3.2595 -1.2014 18 6 3.7730 3.7907 0.4413 19 6 2.3495 4.2485 0.2386 20 6 1.3709 3.4764 1.1366 21 8 1.6757 2.0698 1.2047 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.8747 0.7051 -0.8692 28 1 4.0133 1.1784 0.8360 29 1 6.7996 1.6069 -2.1916 30 1 5.3841 0.6641 -1.6655 31 1 5.1880 1.9799 -2.8481 32 1 8.6603 5.5233 -2.1715 33 1 3.8972 3.4231 1.4598 34 1 4.4533 4.6241 0.2658 35 1 2.0718 4.0949 -0.8042 36 1 2.2825 5.3112 0.4712 37 1 0.3612 3.5996 0.7450 38 1 1.4121 3.8951 2.1420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300871774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:08 Heat of formation + Delta-G solvation = -57.719907 kcal Electronic energy + Delta-G solvation = -17075.286730 eV Core-core repulsion = 14531.214600 eV Total energy + Delta-G solvation = -2544.072130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.86244 -38.08511 -35.17207 -34.81589 -33.04560 -31.61656 -28.77879 -27.46845 -26.28618 -23.79475 -22.43511 -21.40847 -21.01466 -18.93298 -17.86570 -17.50210 -16.59365 -16.17796 -15.86550 -15.52149 -15.11930 -14.75050 -14.54970 -14.22580 -13.87405 -13.54248 -13.38547 -12.94595 -12.85137 -12.72475 -12.50599 -12.19667 -12.13875 -11.93296 -11.79270 -11.56601 -11.39251 -11.19300 -10.91935 -10.73640 -10.28391 -8.95521 -8.29616 -6.32137 1.27916 1.33605 1.43040 2.30071 2.81875 3.03717 3.18466 3.84232 3.97598 4.12248 4.23693 4.25792 4.35927 4.43689 4.47450 4.59751 4.61611 4.63765 4.69994 4.80855 4.89421 4.92859 4.95202 5.05268 5.14898 5.16001 5.26121 5.29266 5.32893 5.46461 5.50382 5.62513 6.06761 6.36705 6.54650 6.72845 6.89551 7.32250 8.86075 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038273 B = 0.008065 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.411894 B = 3471.113449 C = 3995.450124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.103 3.897 4 H 0.062 0.938 5 C 0.042 3.958 6 N -0.547 5.547 7 C 0.187 3.813 8 H -0.018 1.018 9 C -0.142 4.142 10 C -0.507 4.507 11 H 0.049 0.951 12 C 0.015 3.985 13 N -0.945 5.945 14 Si 0.946 3.054 15 H -0.263 1.263 16 H -0.257 1.257 17 H -0.298 1.298 18 C 0.068 3.932 19 C -0.144 4.144 20 C 0.068 3.932 21 O -0.398 6.398 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.003 0.997 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.266 0.734 33 H 0.023 0.977 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.899 -9.892 4.159 16.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C 0.044 3.956 4 H 0.080 0.920 5 C -0.087 4.087 6 N -0.271 5.271 7 C 0.080 3.920 8 H 0.000 1.000 9 C -0.199 4.199 10 C -0.545 4.545 11 H 0.067 0.933 12 C -0.183 4.183 13 N -0.585 5.585 14 Si 0.773 3.227 15 H -0.189 1.189 16 H -0.182 1.182 17 H -0.226 1.226 18 C -0.059 4.059 19 C -0.182 4.182 20 C -0.008 4.008 21 O -0.318 6.318 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.021 0.979 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.012 -9.783 3.877 16.735 hybrid contribution 1.559 0.019 0.342 1.597 sum -11.452 -9.764 4.219 15.630 Atomic orbital electron populations 1.21662 0.94242 1.02288 1.01790 1.21621 0.97363 0.93445 1.03026 1.22038 0.91747 0.94611 0.87181 0.92043 1.21799 0.96881 0.91828 0.98237 1.59095 1.16193 1.05627 1.46167 1.19479 0.84897 0.94743 0.92912 1.00045 1.22129 0.99414 0.98422 0.99975 1.21236 0.94465 0.94506 1.44268 0.93264 1.25723 0.99924 0.98054 0.94563 1.70018 1.16877 1.23887 1.47765 0.85904 0.77380 0.79859 0.79525 1.18897 1.18176 1.22577 1.21684 0.97186 0.94790 0.92254 1.21965 0.94238 1.00955 1.01085 1.23014 0.96976 0.79940 1.00852 1.87405 1.88405 1.22863 1.33128 0.91257 0.92949 0.92723 0.89571 0.91580 0.89500 0.97874 0.94702 0.91813 0.92279 0.92512 0.95901 0.91483 0.91601 0.89614 0.91489 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.81 71.98 0.71 -1.99 16 2 C -0.12 -2.62 5.60 30.59 0.17 -2.45 16 3 C 0.10 2.97 2.23 31.03 0.07 3.04 16 4 H 0.06 1.82 7.11 -2.39 -0.02 1.81 16 5 C 0.04 1.48 4.36 87.90 0.38 1.86 16 6 N -0.55 -22.80 3.98 -890.95 -3.54 -26.34 16 7 C 0.19 8.95 1.70 44.17 0.07 9.02 16 8 H -0.02 -0.90 7.20 -2.39 -0.02 -0.92 16 9 C -0.14 -6.01 8.41 71.98 0.61 -5.41 16 10 C -0.51 -28.78 8.15 25.60 0.21 -28.57 16 11 H 0.05 3.08 6.63 -2.91 -0.02 3.06 16 12 C 0.01 0.86 5.45 84.65 0.46 1.32 16 13 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 14 Si 0.95 45.26 24.37 68.60 1.67 46.94 16 15 H -0.26 -11.88 6.87 99.48 0.68 -11.20 16 16 H -0.26 -11.72 6.53 99.48 0.65 -11.07 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 18 C 0.07 2.74 5.05 85.48 0.43 3.17 16 19 C -0.14 -4.55 5.41 30.12 0.16 -4.38 16 20 C 0.07 1.78 6.72 72.19 0.49 2.26 16 21 O -0.40 -11.95 9.30 -145.58 -1.35 -13.31 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 1.06 7.84 -2.39 -0.02 1.04 16 24 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.09 1.72 8.05 -2.39 -0.02 1.70 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 2.83 5.50 -2.39 -0.01 2.81 16 28 H 0.00 0.12 8.09 -2.39 -0.02 0.10 16 29 H 0.03 1.51 3.27 -2.39 -0.01 1.50 16 30 H 0.06 2.25 6.23 -2.39 -0.01 2.23 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.02 0.92 7.64 -2.39 -0.02 0.90 16 34 H 0.07 3.17 5.49 -2.39 -0.01 3.16 16 35 H 0.07 2.20 7.39 -2.39 -0.02 2.18 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -64.44 280.74 1.77 -62.67 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.94 Total: 10.60 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.76 Total: -22.11 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -3.25 Total: -84.78 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -1.35 Total: -13.31 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.94 kcal Total: -64.44 1.77 -62.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300871774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.947 kcal (2) G-P(sol) polarization free energy of solvation -64.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds