Wall clock time and date at job start Mon Mar 30 2020 03:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 H 1.08994 * 109.47492 * 307.11110 * 3 2 1 5 5 C 1.50704 * 109.47158 * 187.10642 * 3 2 1 6 6 H 1.07997 * 120.00594 * 231.80070 * 5 3 2 7 7 C 1.37883 * 119.99563 * 51.80375 * 5 3 2 8 8 N 1.31515 * 120.00147 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99797 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47230 * 59.99825 * 9 7 5 11 11 H 1.48499 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47311 * 299.99766 * 9 7 5 13 13 N 1.46901 * 109.47004 * 67.11324 * 3 2 1 14 14 C 1.48527 * 110.99801 * 280.21902 * 13 3 2 15 15 C 1.54936 * 103.37902 * 200.36155 * 14 13 3 16 16 C 1.54594 * 102.92106 * 37.33396 * 15 14 13 17 17 H 1.08999 * 110.31316 * 96.95490 * 16 15 14 18 18 O 1.42896 * 110.30929 * 219.12882 * 16 15 14 19 19 C 1.48069 * 111.16279 * 162.82745 * 13 3 2 20 20 C 1.52997 * 109.75848 * 26.31681 * 19 13 3 21 21 C 1.53007 * 109.99034 * 265.07678 * 19 13 3 22 22 H 1.08996 * 109.47132 * 280.17311 * 1 2 3 23 23 H 1.09003 * 109.47414 * 40.17277 * 1 2 3 24 24 H 1.09005 * 109.47175 * 160.17391 * 1 2 3 25 25 H 1.08999 * 109.46963 * 240.00545 * 2 1 3 26 26 H 1.08993 * 109.47576 * 120.00450 * 2 1 3 27 27 H 0.96996 * 119.99916 * 179.97438 * 8 7 5 28 28 H 1.09002 * 110.66529 * 81.84783 * 14 13 3 29 29 H 1.09003 * 110.67193 * 318.88334 * 14 13 3 30 30 H 1.09005 * 110.72835 * 155.68967 * 15 14 13 31 31 H 1.09002 * 110.72777 * 278.79772 * 15 14 13 32 32 H 0.96699 * 114.00251 * 298.54202 * 18 16 15 33 33 H 1.08997 * 109.46889 * 159.08190 * 20 19 13 34 34 H 1.09000 * 109.47159 * 279.07768 * 20 19 13 35 35 H 1.09002 * 109.46971 * 39.07835 * 20 19 13 36 36 H 1.08999 * 109.46815 * 304.76742 * 21 19 13 37 37 H 1.08991 * 109.47091 * 64.77344 * 21 19 13 38 38 H 1.09003 * 109.46511 * 184.77220 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5765 1.9917 -0.8195 5 6 3.5367 1.4462 -0.1758 6 1 4.1601 1.9951 0.5144 7 6 4.1101 0.7488 -1.2179 8 7 3.3509 0.0800 -2.0581 9 14 5.9652 0.7539 -1.4363 10 1 6.6078 0.1824 -0.2256 11 1 6.3265 -0.0651 -2.6211 12 1 6.4364 2.1480 -1.6354 13 7 1.6953 2.0837 1.2760 14 6 0.2777 2.5270 1.2831 15 6 0.2425 3.5978 2.4023 16 6 1.6030 4.3136 2.2387 17 1 1.4838 5.2227 1.6492 18 8 2.1590 4.6205 3.5187 19 6 2.4998 3.3075 1.4937 20 6 2.9295 3.8906 0.1461 21 6 3.7312 2.9801 2.3408 22 1 -0.3633 0.1815 1.0115 23 1 -0.3634 0.7852 -0.6629 24 1 -0.3634 -0.9668 -0.3486 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7542 -0.4103 -2.7914 28 1 -0.3842 1.6955 1.5254 29 1 0.0068 2.9653 0.3225 30 1 -0.5811 4.2941 2.2442 31 1 0.1661 3.1284 3.3831 32 1 1.6148 5.2165 4.0513 33 1 3.1832 4.9433 0.2700 34 1 3.7997 3.3483 -0.2236 35 1 2.1117 3.7955 -0.5683 36 1 3.4171 2.5052 3.2702 37 1 4.3824 2.3027 1.7885 38 1 4.2714 3.8995 2.5670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306362082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:49 Heat of formation + Delta-G solvation = -17.293212 kcal Electronic energy + Delta-G solvation = -17703.031076 eV Core-core repulsion = 15160.711979 eV Total energy + Delta-G solvation = -2542.319097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.55201 -36.07798 -33.52864 -32.48228 -31.07895 -28.79470 -26.61995 -25.93861 -24.58336 -22.56196 -20.77781 -19.75075 -17.87260 -16.88748 -16.48963 -15.36097 -14.62329 -14.32601 -13.89308 -13.27321 -13.14970 -12.55891 -12.45947 -12.19164 -11.80856 -11.74000 -11.34849 -11.05546 -10.95894 -10.78284 -10.69120 -10.49035 -10.45009 -10.28879 -9.98290 -9.58127 -9.47710 -9.35579 -9.21528 -8.35024 -8.23598 -7.18947 -5.94912 -3.98975 3.31438 3.36519 3.39464 4.40405 4.60691 4.89960 5.19108 5.24829 5.33943 5.61657 5.80786 6.01327 6.08830 6.17552 6.22472 6.31797 6.35340 6.50255 6.50750 6.56812 6.68283 6.74841 6.87758 6.91951 7.06054 7.13660 7.26090 7.38648 7.48134 7.70144 7.85279 7.91211 8.02804 8.31167 8.50944 8.60065 9.01143 9.59305 11.05274 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.011859 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.096171 B = 2360.493644 C = 3111.263446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.210 3.790 4 H 0.000 1.000 5 C -0.518 4.518 6 H 0.092 0.908 7 C 0.057 3.943 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.499 5.499 14 C 0.029 3.971 15 C -0.158 4.158 16 C 0.097 3.903 17 H 0.052 0.948 18 O -0.555 6.555 19 C 0.115 3.885 20 C -0.177 4.177 21 C -0.121 4.121 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.029 0.971 25 H 0.115 0.885 26 H 0.037 0.963 27 H 0.259 0.741 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.364 0.636 33 H 0.024 0.976 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 6.310 5.897 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.104 3.896 4 H 0.018 0.982 5 C -0.555 4.555 6 H 0.110 0.890 7 C -0.143 4.143 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.225 5.225 14 C -0.099 4.099 15 C -0.196 4.196 16 C 0.037 3.963 17 H 0.070 0.930 18 O -0.358 6.358 19 C 0.025 3.975 20 C -0.235 4.235 21 C -0.178 4.178 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.133 0.867 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.209 0.791 33 H 0.043 0.957 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.792 5.392 5.895 8.843 hybrid contribution 0.085 0.956 -0.718 1.199 sum -3.708 6.348 5.177 8.991 Atomic orbital electron populations 1.22075 1.00105 0.99103 0.99197 1.21776 0.91020 0.99487 1.03747 1.19465 0.95367 0.91089 0.83664 0.98248 1.21948 0.91925 1.29805 1.11851 0.89049 1.24926 0.97797 0.95358 0.96263 1.69736 1.34404 1.32721 1.16042 0.86697 0.85882 0.78106 0.77645 1.20144 1.21381 1.20246 1.65051 0.99867 1.20646 1.36908 1.23385 0.94004 0.96684 0.95829 1.23250 0.96998 0.98554 1.00828 1.22909 0.92596 0.96502 0.84290 0.92978 1.86644 1.50300 1.69699 1.29201 1.21439 0.93758 0.88480 0.93838 1.22944 1.05563 0.98235 0.96733 1.21809 0.96450 1.00273 0.99277 0.94115 0.94410 0.95172 0.86691 0.94424 0.93010 0.89953 0.94878 0.92230 0.90485 0.79090 0.95739 0.86671 0.93428 0.93078 0.90344 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.52 37.16 0.32 -2.70 16 2 C -0.12 -2.95 5.39 -26.73 -0.14 -3.10 16 3 C 0.21 5.13 1.19 -68.86 -0.08 5.05 16 4 H 0.00 0.00 6.29 -51.93 -0.33 -0.32 16 5 C -0.52 -13.34 5.63 -34.44 -0.19 -13.54 16 6 H 0.09 2.30 2.38 -52.49 -0.12 2.18 16 7 C 0.06 1.51 5.28 -17.82 -0.09 1.42 16 8 N -0.89 -24.48 10.70 55.43 0.59 -23.89 16 9 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.50 -10.78 4.74 -208.39 -0.99 -11.77 16 14 C 0.03 0.54 5.12 -1.90 -0.01 0.53 16 15 C -0.16 -2.46 6.79 -24.87 -0.17 -2.63 16 16 C 0.10 1.62 3.93 -25.38 -0.10 1.52 16 17 H 0.05 0.83 7.53 -51.93 -0.39 0.44 16 18 O -0.55 -8.63 11.49 -35.23 -0.40 -9.04 16 19 C 0.11 2.31 0.72 -130.44 -0.09 2.22 16 20 C -0.18 -3.68 7.27 37.16 0.27 -3.41 16 21 C -0.12 -2.47 7.58 37.16 0.28 -2.19 16 22 H 0.04 0.77 5.85 -51.93 -0.30 0.46 16 23 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.12 3.09 5.24 -51.93 -0.27 2.82 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.08 1.48 5.32 -51.93 -0.28 1.20 16 29 H 0.03 0.63 7.71 -51.93 -0.40 0.23 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 32 H 0.36 3.83 9.11 45.56 0.41 4.25 16 33 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 34 H 0.12 2.66 4.64 -51.93 -0.24 2.42 16 35 H 0.05 1.03 6.67 -51.93 -0.35 0.68 16 36 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 37 H 0.08 1.73 5.04 -51.93 -0.26 1.47 16 38 H 0.04 0.78 7.81 -51.93 -0.41 0.37 16 LS Contribution 272.99 15.07 4.11 4.11 Total: -1.00 -27.76 272.99 -6.70 -34.45 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.97 Total: 7.25 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.02 Total: -16.83 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.40 Total: -35.65 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.40 Total: -9.04 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.76 -6.70 -34.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.160 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds