Wall clock time and date at job start Mon Mar 30 2020 03:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 H 1.08994 * 109.47492 * 307.11110 * 3 2 1 5 5 C 1.50704 * 109.47158 * 187.10642 * 3 2 1 6 6 H 1.07997 * 120.00594 * 231.80070 * 5 3 2 7 7 C 1.37883 * 119.99563 * 51.80375 * 5 3 2 8 8 N 1.31515 * 120.00147 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99797 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47230 * 59.99825 * 9 7 5 11 11 H 1.48499 * 109.47278 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47311 * 299.99766 * 9 7 5 13 13 N 1.46901 * 109.47004 * 67.11324 * 3 2 1 14 14 C 1.48527 * 110.99801 * 280.21902 * 13 3 2 15 15 C 1.54936 * 103.37902 * 200.36155 * 14 13 3 16 16 C 1.54594 * 102.92106 * 37.33396 * 15 14 13 17 17 H 1.08999 * 110.31316 * 96.95490 * 16 15 14 18 18 O 1.42896 * 110.30929 * 219.12882 * 16 15 14 19 19 C 1.48069 * 111.16279 * 162.82745 * 13 3 2 20 20 C 1.52997 * 109.75848 * 26.31681 * 19 13 3 21 21 C 1.53007 * 109.99034 * 265.07678 * 19 13 3 22 22 H 1.08996 * 109.47132 * 280.17311 * 1 2 3 23 23 H 1.09003 * 109.47414 * 40.17277 * 1 2 3 24 24 H 1.09005 * 109.47175 * 160.17391 * 1 2 3 25 25 H 1.08999 * 109.46963 * 240.00545 * 2 1 3 26 26 H 1.08993 * 109.47576 * 120.00450 * 2 1 3 27 27 H 0.96996 * 119.99916 * 179.97438 * 8 7 5 28 28 H 1.09002 * 110.66529 * 81.84783 * 14 13 3 29 29 H 1.09003 * 110.67193 * 318.88334 * 14 13 3 30 30 H 1.09005 * 110.72835 * 155.68967 * 15 14 13 31 31 H 1.09002 * 110.72777 * 278.79772 * 15 14 13 32 32 H 0.96699 * 114.00251 * 298.54202 * 18 16 15 33 33 H 1.08997 * 109.46889 * 159.08190 * 20 19 13 34 34 H 1.09000 * 109.47159 * 279.07768 * 20 19 13 35 35 H 1.09002 * 109.46971 * 39.07835 * 20 19 13 36 36 H 1.08999 * 109.46815 * 304.76742 * 21 19 13 37 37 H 1.08991 * 109.47091 * 64.77344 * 21 19 13 38 38 H 1.09003 * 109.46511 * 184.77220 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5765 1.9917 -0.8195 5 6 3.5367 1.4462 -0.1758 6 1 4.1601 1.9951 0.5144 7 6 4.1101 0.7488 -1.2179 8 7 3.3509 0.0800 -2.0581 9 14 5.9652 0.7539 -1.4363 10 1 6.6078 0.1824 -0.2256 11 1 6.3265 -0.0651 -2.6211 12 1 6.4364 2.1480 -1.6354 13 7 1.6953 2.0837 1.2760 14 6 0.2777 2.5270 1.2831 15 6 0.2425 3.5978 2.4023 16 6 1.6030 4.3136 2.2387 17 1 1.4838 5.2227 1.6492 18 8 2.1590 4.6205 3.5187 19 6 2.4998 3.3075 1.4937 20 6 2.9295 3.8906 0.1461 21 6 3.7312 2.9801 2.3408 22 1 -0.3633 0.1815 1.0115 23 1 -0.3634 0.7852 -0.6629 24 1 -0.3634 -0.9668 -0.3486 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7542 -0.4103 -2.7914 28 1 -0.3842 1.6955 1.5254 29 1 0.0068 2.9653 0.3225 30 1 -0.5811 4.2941 2.2442 31 1 0.1661 3.1284 3.3831 32 1 1.6148 5.2165 4.0513 33 1 3.1832 4.9433 0.2700 34 1 3.7997 3.3483 -0.2236 35 1 2.1117 3.7955 -0.5683 36 1 3.4171 2.5052 3.2702 37 1 4.3824 2.3027 1.7885 38 1 4.2714 3.8995 2.5670 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306362082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:48 Heat of formation + Delta-G solvation = -37.216043 kcal Electronic energy + Delta-G solvation = -17703.894994 eV Core-core repulsion = 15160.711979 eV Total energy + Delta-G solvation = -2543.183015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10265 -37.51520 -35.23626 -34.16735 -32.80425 -30.42835 -28.34006 -27.68698 -26.11686 -24.35940 -22.23085 -21.51324 -19.53582 -18.43897 -18.10745 -17.03761 -16.37571 -15.91423 -15.28387 -15.00592 -14.77706 -14.25382 -14.07445 -13.83115 -13.50920 -13.41216 -12.91518 -12.74320 -12.63033 -12.47097 -12.42153 -12.22230 -12.05759 -11.93159 -11.56297 -11.34590 -11.19661 -11.03677 -10.70379 -10.32558 -10.11535 -8.90730 -7.96744 -6.04866 1.43697 1.45452 1.51207 2.46131 3.20975 3.38814 3.44660 3.83356 3.88972 4.28031 4.40001 4.53085 4.58920 4.65952 4.69932 4.71695 4.82470 4.83040 4.97205 5.01720 5.15076 5.17124 5.19190 5.27427 5.31526 5.38777 5.52448 5.61636 5.68241 5.81986 5.92803 6.08701 6.47638 6.55228 6.77047 7.03315 7.05291 7.55781 9.02393 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.011859 C = 0.008997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.096171 B = 2360.493644 C = 3111.263446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C 0.220 3.780 4 H -0.031 1.031 5 C -0.522 4.522 6 H 0.098 0.902 7 C 0.009 3.991 8 N -0.917 5.917 9 Si 0.942 3.058 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.511 5.511 14 C 0.024 3.976 15 C -0.144 4.144 16 C 0.105 3.895 17 H 0.067 0.933 18 O -0.566 6.566 19 C 0.102 3.898 20 C -0.167 4.167 21 C -0.111 4.111 22 H 0.058 0.942 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.022 0.978 27 H 0.256 0.744 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.389 0.611 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.030 0.970 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 7.775 7.422 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C 0.113 3.887 4 H -0.014 1.014 5 C -0.559 4.559 6 H 0.115 0.885 7 C -0.188 4.188 8 N -0.558 5.558 9 Si 0.769 3.231 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.236 5.236 14 C -0.104 4.104 15 C -0.182 4.182 16 C 0.045 3.955 17 H 0.084 0.916 18 O -0.373 6.373 19 C 0.012 3.988 20 C -0.225 4.225 21 C -0.168 4.168 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.238 0.762 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.471 6.881 7.447 11.082 hybrid contribution 0.279 0.540 -1.141 1.292 sum -4.191 7.421 6.307 10.602 Atomic orbital electron populations 1.21919 0.97125 0.99801 1.00356 1.21633 0.93764 0.99032 1.01521 1.19212 0.94404 0.90993 0.84137 1.01391 1.22340 0.93098 1.28965 1.11542 0.88515 1.25598 1.01318 0.95516 0.96387 1.69894 1.35653 1.33725 1.16563 0.85840 0.81756 0.78213 0.77291 1.19989 1.21560 1.19504 1.64953 1.02019 1.21939 1.34714 1.23457 0.92094 0.97992 0.96848 1.23199 0.97472 0.97920 0.99629 1.22671 0.91948 0.96047 0.84847 0.91551 1.86575 1.51237 1.70674 1.28831 1.21563 0.94341 0.89012 0.93848 1.22746 1.03583 0.99330 0.96856 1.21669 0.96361 1.00206 0.98585 0.92288 0.94592 0.93921 0.89459 0.95937 0.93414 0.89457 0.95696 0.88845 0.89912 0.76172 0.93405 0.89447 0.95115 0.93539 0.92763 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 8.52 71.98 0.61 -4.81 16 2 C -0.12 -5.97 5.39 30.59 0.16 -5.81 16 3 C 0.22 10.91 1.19 44.17 0.05 10.96 16 4 H -0.03 -1.72 6.29 -2.39 -0.02 -1.74 16 5 C -0.52 -27.47 5.63 25.60 0.14 -27.33 16 6 H 0.10 4.95 2.38 -2.91 -0.01 4.94 16 7 C 0.01 0.50 5.28 84.66 0.45 0.95 16 8 N -0.92 -52.10 10.70 21.45 0.23 -51.87 16 9 Si 0.94 43.29 29.54 68.60 2.03 45.32 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 N -0.51 -21.72 4.74 -813.22 -3.86 -25.57 16 14 C 0.02 0.84 5.12 86.65 0.44 1.29 16 15 C -0.14 -3.93 6.79 31.80 0.22 -3.72 16 16 C 0.10 3.16 3.93 31.47 0.12 3.28 16 17 H 0.07 1.85 7.53 -2.39 -0.02 1.83 16 18 O -0.57 -15.40 11.49 -148.98 -1.71 -17.11 16 19 C 0.10 3.97 0.72 3.64 0.00 3.97 16 20 C -0.17 -6.86 7.27 71.98 0.52 -6.34 16 21 C -0.11 -4.40 7.58 71.98 0.55 -3.86 16 22 H 0.06 2.14 5.85 -2.39 -0.01 2.12 16 23 H 0.03 1.43 7.60 -2.39 -0.02 1.41 16 24 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.09 4.85 5.24 -2.39 -0.01 4.84 16 26 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 28 H 0.09 2.94 5.32 -2.39 -0.01 2.93 16 29 H 0.02 0.92 7.71 -2.39 -0.02 0.90 16 30 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 32 H 0.39 6.40 9.11 -74.06 -0.67 5.72 16 33 H 0.05 1.68 7.83 -2.39 -0.02 1.66 16 34 H 0.09 4.07 4.64 -2.39 -0.01 4.06 16 35 H 0.03 1.33 6.67 -2.39 -0.02 1.31 16 36 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 37 H 0.05 2.40 5.04 -2.39 -0.01 2.38 16 38 H 0.05 1.96 7.81 -2.39 -0.02 1.94 16 Total: -1.00 -60.35 272.99 0.35 -60.00 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.39 Total: 20.66 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.28 Total: -31.42 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -3.63 Total: -77.44 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.71 Total: -17.11 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -60.35 0.35 -60.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.781 kcal (2) G-P(sol) polarization free energy of solvation -60.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds