Wall clock time and date at job start Mon Mar 30 2020 03:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47421 * 2 1 4 4 H 1.08998 * 109.47081 * 44.92186 * 3 2 1 5 5 C 1.50704 * 109.47223 * 164.92456 * 3 2 1 6 6 H 1.07998 * 119.99483 * 114.78512 * 5 3 2 7 7 C 1.37879 * 119.99838 * 294.50753 * 5 3 2 8 8 N 1.31514 * 119.99841 * 180.27716 * 7 5 3 9 9 Si 1.86803 * 119.99970 * 0.27675 * 7 5 3 10 10 H 1.48500 * 109.47167 * 89.99971 * 9 7 5 11 11 H 1.48500 * 109.46902 * 209.99980 * 9 7 5 12 12 H 1.48499 * 109.46977 * 329.99533 * 9 7 5 13 13 N 1.46898 * 109.47067 * 284.92551 * 3 2 1 14 14 C 1.48537 * 111.00196 * 55.18011 * 13 3 2 15 15 C 1.54929 * 103.22754 * 159.72204 * 14 13 3 16 16 C 1.54597 * 102.92609 * 322.58396 * 15 14 13 17 17 H 1.08998 * 110.30892 * 263.04631 * 16 15 14 18 18 O 1.42894 * 110.31015 * 140.87207 * 16 15 14 19 19 C 1.47903 * 110.99991 * 172.57391 * 13 3 2 20 20 C 1.53001 * 109.91860 * 333.51174 * 19 13 3 21 21 C 1.53007 * 109.91522 * 94.60591 * 19 13 3 22 22 H 1.08998 * 109.47069 * 320.53930 * 1 2 3 23 23 H 1.09005 * 109.47163 * 80.53846 * 1 2 3 24 24 H 1.08995 * 109.47383 * 200.54050 * 1 2 3 25 25 H 1.08997 * 109.47488 * 239.99768 * 2 1 3 26 26 H 1.09006 * 109.46841 * 120.00172 * 2 1 3 27 27 H 0.96996 * 120.00150 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.66365 * 278.15933 * 14 13 3 29 29 H 1.08997 * 110.66715 * 41.28332 * 14 13 3 30 30 H 1.09006 * 110.72307 * 204.23146 * 15 14 13 31 31 H 1.08997 * 110.87816 * 81.01685 * 15 14 13 32 32 H 0.96696 * 113.99955 * 64.29129 * 18 16 15 33 33 H 1.08996 * 109.46990 * 59.99558 * 20 19 13 34 34 H 1.08996 * 109.46868 * 179.97438 * 20 19 13 35 35 H 1.09001 * 109.46685 * 299.99671 * 20 19 13 36 36 H 1.09002 * 109.46988 * 52.02637 * 21 19 13 37 37 H 1.08996 * 109.46839 * 172.02226 * 21 19 13 38 38 H 1.08998 * 109.46761 * 292.02571 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.4751 2.0276 0.7257 5 6 3.5009 1.4587 0.3695 6 1 4.2368 1.7815 -0.3520 7 6 3.8974 1.0669 1.6307 8 7 5.1718 1.0863 1.9549 9 14 2.6244 0.5086 2.8786 10 1 2.4221 -0.9575 2.7573 11 1 3.0993 0.8312 4.2482 12 1 1.3400 1.2085 2.6224 13 7 1.8669 2.0230 -1.3382 14 6 0.4542 1.9190 -1.7850 15 6 0.3527 2.9964 -2.8937 16 6 1.2371 4.1402 -2.3464 17 1 0.6214 4.8894 -1.8488 18 8 1.9875 4.7373 -3.4057 19 6 2.1831 3.4678 -1.3341 20 6 1.9503 4.0484 0.0622 21 6 3.6390 3.6839 -1.7521 22 1 -0.3633 0.7934 0.6531 23 1 -0.3634 0.1689 -1.0137 24 1 -0.3634 -0.9623 0.3606 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 5.4507 0.8110 2.8422 28 1 0.2513 0.9282 -2.1916 29 1 -0.2265 2.1459 -0.9645 30 1 -0.6780 3.3298 -3.0144 31 1 0.7482 2.6209 -3.8375 32 1 1.4438 5.1763 -4.0740 33 1 2.5927 3.5379 0.7796 34 1 2.1858 5.1126 0.0570 35 1 0.9069 3.9081 0.3446 36 1 3.8287 3.1632 -2.6907 37 1 3.8247 4.7498 -1.8840 38 1 4.3007 3.2927 -0.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306362083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:51 Heat of formation + Delta-G solvation = -27.056179 kcal Electronic energy + Delta-G solvation = -17712.807971 eV Core-core repulsion = 15170.065521 eV Total energy + Delta-G solvation = -2542.742451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.69437 -36.26250 -33.62849 -32.58446 -31.35910 -29.06919 -26.93795 -26.43536 -24.41864 -22.51414 -21.00829 -20.10626 -17.90505 -16.98962 -16.83114 -15.51732 -14.65971 -14.49531 -14.12410 -13.56067 -13.08557 -12.77885 -12.67803 -12.50619 -12.23294 -11.72509 -11.58185 -11.35555 -11.08582 -10.99021 -10.89036 -10.73660 -10.39613 -10.32313 -9.99635 -9.79057 -9.63075 -9.54289 -9.35154 -8.82781 -8.50272 -7.34640 -6.03662 -4.00750 3.26574 3.37506 3.37586 4.41124 4.52184 4.71232 5.07570 5.13259 5.23360 5.46076 5.66653 5.82376 5.89147 5.91445 5.96058 5.99251 6.06155 6.08285 6.30812 6.37512 6.42089 6.58771 6.61225 6.68188 6.77095 6.81346 6.87801 6.98116 7.17915 7.26659 7.44111 7.69521 7.91699 7.99797 8.08980 8.69861 9.09814 9.58293 11.08109 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.011678 C = 0.009500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.722745 B = 2397.163432 C = 2946.668983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.126 4.126 3 C 0.172 3.828 4 H 0.013 0.987 5 C -0.500 4.500 6 H 0.094 0.906 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.870 3.130 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.265 1.265 13 N -0.488 5.488 14 C 0.029 3.971 15 C -0.159 4.159 16 C 0.097 3.903 17 H 0.053 0.947 18 O -0.552 6.552 19 C 0.116 3.884 20 C -0.175 4.175 21 C -0.115 4.115 22 H 0.044 0.956 23 H 0.064 0.936 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.263 0.737 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.365 0.635 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.506 4.324 -6.629 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.164 4.164 3 C 0.064 3.936 4 H 0.031 0.969 5 C -0.538 4.538 6 H 0.112 0.888 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.699 3.301 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.190 1.190 13 N -0.213 5.213 14 C -0.099 4.099 15 C -0.198 4.198 16 C 0.037 3.963 17 H 0.071 0.929 18 O -0.356 6.356 19 C 0.026 3.974 20 C -0.233 4.233 21 C -0.173 4.173 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.210 0.790 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.507 3.753 -6.461 12.092 hybrid contribution -1.823 0.182 1.122 2.148 sum -11.329 3.935 -5.339 13.128 Atomic orbital electron populations 1.22464 0.98583 1.00140 1.01643 1.21951 0.92693 1.00094 1.01700 1.20098 0.97738 0.90269 0.85460 0.96930 1.21158 0.90582 1.43391 0.98702 0.88848 1.24915 0.94808 0.95429 0.97895 1.69876 1.14547 1.48449 1.20771 0.87085 0.82752 0.79385 0.80829 1.20425 1.22269 1.19000 1.64960 1.16758 1.11520 1.28037 1.23529 0.92262 0.98300 0.95841 1.23275 0.98860 0.97329 1.00302 1.22843 0.92033 0.93029 0.88352 0.92912 1.86664 1.36817 1.74960 1.37146 1.21432 0.96175 0.87867 0.91945 1.22533 1.01259 1.00372 0.99102 1.21629 0.94361 0.99371 1.01924 0.93675 0.91755 0.94346 0.91597 0.92555 0.92715 0.89925 0.94259 0.92053 0.90233 0.78981 0.87995 0.93645 0.94394 0.93007 0.94066 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.41 37.15 0.31 -2.71 16 2 C -0.13 -2.72 4.69 -26.74 -0.13 -2.84 16 3 C 0.17 3.95 0.65 -68.87 -0.04 3.90 16 4 H 0.01 0.32 4.18 -51.93 -0.22 0.10 16 5 C -0.50 -13.47 6.71 -34.44 -0.23 -13.70 16 6 H 0.09 2.75 5.44 -52.49 -0.29 2.46 16 7 C 0.07 1.99 5.44 -17.82 -0.10 1.89 16 8 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 9 Si 0.87 21.42 24.70 -169.99 -4.20 17.22 16 10 H -0.28 -6.75 6.85 56.52 0.39 -6.36 16 11 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 12 H -0.27 -6.27 6.39 56.52 0.36 -5.90 16 13 N -0.49 -10.07 4.75 -208.51 -0.99 -11.06 16 14 C 0.03 0.48 4.39 -1.90 -0.01 0.48 16 15 C -0.16 -2.30 6.80 -24.87 -0.17 -2.47 16 16 C 0.10 1.54 3.97 -25.37 -0.10 1.44 16 17 H 0.05 0.77 7.68 -51.93 -0.40 0.37 16 18 O -0.55 -8.27 11.49 -35.23 -0.40 -8.68 16 19 C 0.12 2.25 0.73 -130.52 -0.09 2.16 16 20 C -0.17 -3.43 6.91 37.16 0.26 -3.17 16 21 C -0.12 -2.40 7.35 37.16 0.27 -2.13 16 22 H 0.04 0.80 7.36 -51.93 -0.38 0.42 16 23 H 0.06 1.00 4.72 -51.93 -0.25 0.76 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.06 1.31 4.20 -51.93 -0.22 1.09 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.08 1.34 6.12 -51.93 -0.32 1.02 16 29 H 0.04 0.66 6.64 -51.93 -0.34 0.31 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.36 3.60 9.12 45.56 0.42 4.01 16 33 H 0.10 2.34 5.40 -51.93 -0.28 2.06 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.70 7.71 -51.93 -0.40 0.30 16 36 H 0.05 1.10 8.05 -51.93 -0.42 0.68 16 37 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 38 H 0.08 1.88 5.41 -51.93 -0.28 1.60 16 LS Contribution 269.96 15.07 4.07 4.07 Total: -1.00 -29.74 269.96 -5.85 -35.60 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.07 Total: 6.08 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.03 Total: -17.16 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.22 Total: -37.14 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.40 Total: -8.68 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.20 Total: 17.22 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.74 -5.85 -35.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.542 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds