Wall clock time and date at job start Mon Mar 30 2020 03:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47421 * 2 1 4 4 H 1.08998 * 109.47081 * 44.92186 * 3 2 1 5 5 C 1.50704 * 109.47223 * 164.92456 * 3 2 1 6 6 H 1.07998 * 119.99483 * 114.78512 * 5 3 2 7 7 C 1.37879 * 119.99838 * 294.50753 * 5 3 2 8 8 N 1.31514 * 119.99841 * 180.27716 * 7 5 3 9 9 Si 1.86803 * 119.99970 * 0.27675 * 7 5 3 10 10 H 1.48500 * 109.47167 * 89.99971 * 9 7 5 11 11 H 1.48500 * 109.46902 * 209.99980 * 9 7 5 12 12 H 1.48499 * 109.46977 * 329.99533 * 9 7 5 13 13 N 1.46898 * 109.47067 * 284.92551 * 3 2 1 14 14 C 1.48537 * 111.00196 * 55.18011 * 13 3 2 15 15 C 1.54929 * 103.22754 * 159.72204 * 14 13 3 16 16 C 1.54597 * 102.92609 * 322.58396 * 15 14 13 17 17 H 1.08998 * 110.30892 * 263.04631 * 16 15 14 18 18 O 1.42894 * 110.31015 * 140.87207 * 16 15 14 19 19 C 1.47903 * 110.99991 * 172.57391 * 13 3 2 20 20 C 1.53001 * 109.91860 * 333.51174 * 19 13 3 21 21 C 1.53007 * 109.91522 * 94.60591 * 19 13 3 22 22 H 1.08998 * 109.47069 * 320.53930 * 1 2 3 23 23 H 1.09005 * 109.47163 * 80.53846 * 1 2 3 24 24 H 1.08995 * 109.47383 * 200.54050 * 1 2 3 25 25 H 1.08997 * 109.47488 * 239.99768 * 2 1 3 26 26 H 1.09006 * 109.46841 * 120.00172 * 2 1 3 27 27 H 0.96996 * 120.00150 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.66365 * 278.15933 * 14 13 3 29 29 H 1.08997 * 110.66715 * 41.28332 * 14 13 3 30 30 H 1.09006 * 110.72307 * 204.23146 * 15 14 13 31 31 H 1.08997 * 110.87816 * 81.01685 * 15 14 13 32 32 H 0.96696 * 113.99955 * 64.29129 * 18 16 15 33 33 H 1.08996 * 109.46990 * 59.99558 * 20 19 13 34 34 H 1.08996 * 109.46868 * 179.97438 * 20 19 13 35 35 H 1.09001 * 109.46685 * 299.99671 * 20 19 13 36 36 H 1.09002 * 109.46988 * 52.02637 * 21 19 13 37 37 H 1.08996 * 109.46839 * 172.02226 * 21 19 13 38 38 H 1.08998 * 109.46761 * 292.02571 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.4751 2.0276 0.7257 5 6 3.5009 1.4587 0.3695 6 1 4.2368 1.7815 -0.3520 7 6 3.8974 1.0669 1.6307 8 7 5.1718 1.0863 1.9549 9 14 2.6244 0.5086 2.8786 10 1 2.4221 -0.9575 2.7573 11 1 3.0993 0.8312 4.2482 12 1 1.3400 1.2085 2.6224 13 7 1.8669 2.0230 -1.3382 14 6 0.4542 1.9190 -1.7850 15 6 0.3527 2.9964 -2.8937 16 6 1.2371 4.1402 -2.3464 17 1 0.6214 4.8894 -1.8488 18 8 1.9875 4.7373 -3.4057 19 6 2.1831 3.4678 -1.3341 20 6 1.9503 4.0484 0.0622 21 6 3.6390 3.6839 -1.7521 22 1 -0.3633 0.7934 0.6531 23 1 -0.3634 0.1689 -1.0137 24 1 -0.3634 -0.9623 0.3606 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 5.4507 0.8110 2.8422 28 1 0.2513 0.9282 -2.1916 29 1 -0.2265 2.1459 -0.9645 30 1 -0.6780 3.3298 -3.0144 31 1 0.7482 2.6209 -3.8375 32 1 1.4438 5.1763 -4.0740 33 1 2.5927 3.5379 0.7796 34 1 2.1858 5.1126 0.0570 35 1 0.9069 3.9081 0.3446 36 1 3.8287 3.1632 -2.6907 37 1 3.8247 4.7498 -1.8840 38 1 4.3007 3.2927 -0.9793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306362083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:50 Heat of formation + Delta-G solvation = -50.780055 kcal Electronic energy + Delta-G solvation = -17713.836716 eV Core-core repulsion = 15170.065521 eV Total energy + Delta-G solvation = -2543.771195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15504 -37.62384 -35.21402 -34.35862 -32.99225 -30.59391 -28.62759 -28.10969 -25.86943 -24.25497 -22.40490 -21.64858 -19.49408 -18.84792 -18.16265 -17.14909 -16.40063 -16.05114 -15.39639 -15.05749 -14.79297 -14.36330 -14.31529 -14.11193 -13.78219 -13.41333 -13.08942 -12.87725 -12.62503 -12.56356 -12.46623 -12.29653 -12.10915 -11.98784 -11.62786 -11.46034 -11.17386 -11.06629 -10.82433 -10.68102 -10.53478 -8.93439 -8.20229 -6.19652 1.29954 1.33633 1.42437 2.35085 3.11465 3.24684 3.41139 3.78451 3.86855 4.20666 4.34646 4.37273 4.42100 4.45022 4.50433 4.65079 4.70971 4.76736 4.87428 4.95110 4.97353 5.07244 5.12760 5.18581 5.21033 5.24252 5.30000 5.31140 5.50226 5.57104 5.69635 5.80577 6.18139 6.43497 6.77392 6.90653 7.06773 7.43033 8.95332 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.011678 C = 0.009500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.722745 B = 2397.163432 C = 2946.668983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C 0.180 3.820 4 H 0.009 0.991 5 C -0.490 4.490 6 H 0.055 0.945 7 C 0.014 3.986 8 N -0.950 5.950 9 Si 0.928 3.072 10 H -0.270 1.270 11 H -0.301 1.301 12 H -0.245 1.245 13 N -0.510 5.510 14 C 0.024 3.976 15 C -0.147 4.147 16 C 0.105 3.895 17 H 0.075 0.925 18 O -0.569 6.569 19 C 0.104 3.896 20 C -0.168 4.168 21 C -0.103 4.103 22 H 0.045 0.955 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.261 0.739 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.390 0.610 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.051 0.949 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.169 4.800 -7.695 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.166 4.166 3 C 0.072 3.928 4 H 0.026 0.974 5 C -0.528 4.528 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.592 5.592 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.228 1.228 12 H -0.169 1.169 13 N -0.235 5.235 14 C -0.103 4.103 15 C -0.184 4.184 16 C 0.045 3.955 17 H 0.092 0.908 18 O -0.377 6.377 19 C 0.014 3.986 20 C -0.226 4.226 21 C -0.161 4.161 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.239 0.761 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.209 4.239 -7.565 15.801 hybrid contribution -0.594 0.102 1.324 1.454 sum -13.803 4.341 -6.242 15.758 Atomic orbital electron populations 1.22379 0.94941 1.01276 1.03391 1.21862 0.95954 0.98343 1.00442 1.19859 0.94576 0.91513 0.86866 0.97353 1.21415 0.92562 1.41175 0.97693 0.92744 1.25650 0.96428 0.96106 1.00060 1.70036 1.16842 1.51023 1.21287 0.86130 0.81074 0.79371 0.77898 1.19646 1.22848 1.16881 1.64806 1.20041 1.12338 1.26289 1.23656 0.89752 0.99974 0.96942 1.23235 1.00710 0.95543 0.98962 1.22663 0.90987 0.93896 0.87940 0.90752 1.86599 1.38016 1.75316 1.37753 1.21526 0.95872 0.87967 0.93238 1.22397 1.01144 1.00792 0.98270 1.21452 0.95418 0.99474 0.99744 0.93605 0.89362 0.92555 0.92245 0.94534 0.92967 0.89036 0.93374 0.88177 0.90344 0.76069 0.92191 0.92120 0.92802 0.94130 0.92978 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 8.41 71.98 0.61 -4.53 16 2 C -0.13 -5.31 4.69 30.59 0.14 -5.17 16 3 C 0.18 8.18 0.65 44.17 0.03 8.20 16 4 H 0.01 0.42 4.18 -2.39 -0.01 0.41 16 5 C -0.49 -27.43 6.71 25.60 0.17 -27.26 16 6 H 0.05 3.43 5.44 -2.91 -0.02 3.41 16 7 C 0.01 0.81 5.44 84.66 0.46 1.27 16 8 N -0.95 -59.76 13.96 21.45 0.30 -59.47 16 9 Si 0.93 44.85 24.70 68.60 1.69 46.54 16 10 H -0.27 -12.64 6.85 99.48 0.68 -11.96 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 12 H -0.25 -10.91 6.39 99.48 0.64 -10.27 16 13 N -0.51 -20.40 4.75 -813.60 -3.87 -24.27 16 14 C 0.02 0.72 4.39 86.65 0.38 1.10 16 15 C -0.15 -3.52 6.80 31.80 0.22 -3.30 16 16 C 0.10 2.93 3.97 31.48 0.12 3.06 16 17 H 0.07 1.80 7.68 -2.39 -0.02 1.78 16 18 O -0.57 -15.22 11.49 -148.98 -1.71 -16.93 16 19 C 0.10 3.92 0.73 3.67 0.00 3.92 16 20 C -0.17 -6.42 6.91 71.98 0.50 -5.92 16 21 C -0.10 -4.40 7.35 71.98 0.53 -3.87 16 22 H 0.04 1.44 7.36 -2.39 -0.02 1.42 16 23 H 0.09 2.35 4.72 -2.38 -0.01 2.34 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 26 H 0.04 1.65 4.20 -2.38 -0.01 1.64 16 27 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 28 H 0.09 2.57 6.12 -2.39 -0.01 2.56 16 29 H 0.05 1.38 6.64 -2.39 -0.02 1.37 16 30 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 32 H 0.39 6.08 9.12 -74.06 -0.68 5.40 16 33 H 0.06 2.80 5.40 -2.39 -0.01 2.79 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.85 7.71 -2.39 -0.02 1.83 16 36 H 0.04 1.75 8.05 -2.39 -0.02 1.74 16 37 H 0.05 2.03 7.68 -2.39 -0.02 2.01 16 38 H 0.04 1.89 5.41 -2.39 -0.01 1.88 16 Total: -1.00 -67.63 269.96 -0.14 -67.77 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.29 Total: 18.86 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 3.16 Total: -32.51 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -3.57 Total: -83.73 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -1.71 Total: -16.93 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.69 Total: 46.54 kcal Total: -67.63 -0.14 -67.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.987 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds