Wall clock time and date at job start Mon Mar 30 2020 03:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47425 * 2 1 4 4 H 1.09008 * 109.47124 * 315.94279 * 3 2 1 5 5 C 1.50697 * 109.47349 * 195.94517 * 3 2 1 6 6 H 1.08003 * 119.99495 * 244.46620 * 5 3 2 7 7 C 1.37875 * 120.00174 * 64.46090 * 5 3 2 8 8 N 1.31507 * 120.00048 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99961 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47235 * 60.00096 * 9 7 5 11 11 H 1.48498 * 109.47275 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47129 * 300.00603 * 9 7 5 13 13 N 1.46899 * 109.46988 * 75.93875 * 3 2 1 14 14 C 1.48529 * 111.00340 * 307.22504 * 13 3 2 15 15 C 1.54940 * 103.22745 * 200.28135 * 14 13 3 16 16 C 1.54596 * 102.92312 * 37.41292 * 15 14 13 17 17 H 1.08998 * 110.30384 * 219.02914 * 16 15 14 18 18 O 1.42897 * 110.30807 * 96.96138 * 16 15 14 19 19 C 1.47910 * 110.99935 * 189.82601 * 13 3 2 20 20 C 1.52994 * 109.91729 * 265.20141 * 19 13 3 21 21 C 1.53006 * 109.91281 * 26.49645 * 19 13 3 22 22 H 1.09008 * 109.47100 * 161.49229 * 1 2 3 23 23 H 1.08996 * 109.46894 * 41.49197 * 1 2 3 24 24 H 1.09005 * 109.46803 * 281.48691 * 1 2 3 25 25 H 1.09001 * 109.46894 * 120.00247 * 2 1 3 26 26 H 1.09000 * 109.46978 * 239.99634 * 2 1 3 27 27 H 0.96999 * 119.99927 * 179.97438 * 8 7 5 28 28 H 1.09002 * 110.66520 * 318.71453 * 14 13 3 29 29 H 1.08997 * 110.66632 * 81.67559 * 14 13 3 30 30 H 1.08997 * 110.72115 * 155.77535 * 15 14 13 31 31 H 1.09001 * 110.71945 * 279.05229 * 15 14 13 32 32 H 0.96703 * 114.00112 * 61.44727 * 18 16 15 33 33 H 1.08996 * 109.47275 * 67.45670 * 20 19 13 34 34 H 1.09006 * 109.46792 * 187.45933 * 20 19 13 35 35 H 1.08993 * 109.47330 * 307.45372 * 20 19 13 36 36 H 1.08997 * 109.47072 * 53.28493 * 21 19 13 37 37 H 1.09007 * 109.46693 * 173.28211 * 21 19 13 38 38 H 1.09001 * 109.46873 * 293.27862 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.4649 2.0312 -0.7147 5 6 3.4955 1.4606 -0.3903 6 1 4.2404 1.7913 0.3183 7 6 3.8761 1.0550 -1.6519 8 7 2.9689 0.6528 -2.5148 9 14 5.6803 1.0770 -2.1354 10 1 6.4473 0.1879 -1.2262 11 1 5.8239 0.5983 -3.5338 12 1 6.2040 2.4626 -2.0307 13 7 1.8860 2.0162 1.3435 14 6 0.4928 1.8583 1.8333 15 6 0.3842 2.9314 2.9457 16 6 1.2070 4.1080 2.3724 17 1 1.7847 4.5863 3.1633 18 8 0.3431 5.0585 1.7461 19 6 2.1465 3.4721 1.3311 20 6 3.6039 3.7441 1.7090 21 6 1.8487 4.0430 -0.0569 22 1 -0.3634 -0.9746 -0.3262 23 1 -0.3633 0.7697 -0.6808 24 1 -0.3633 0.2047 1.0071 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.2366 0.3678 -3.4025 28 1 -0.2210 2.0589 1.0343 29 1 0.3397 0.8596 2.2424 30 1 -0.6543 3.2250 3.0982 31 1 0.8244 2.5695 3.8749 32 1 -0.3006 5.4599 2.3458 33 1 4.2591 3.3697 0.9226 34 1 3.7544 4.8173 1.8271 35 1 3.8363 3.2394 2.6467 36 1 0.8400 3.7598 -0.3575 37 1 1.9274 5.1298 -0.0273 38 1 2.5668 3.6462 -0.7746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306362085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:54 Heat of formation + Delta-G solvation = -33.523827 kcal Electronic energy + Delta-G solvation = -17684.765476 eV Core-core repulsion = 15141.742567 eV Total energy + Delta-G solvation = -2543.022909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56161 -36.01799 -33.49261 -32.41470 -31.04379 -28.91410 -26.49391 -26.25035 -24.42630 -22.70835 -20.80976 -19.80240 -17.85275 -16.67936 -16.22117 -15.47062 -15.07498 -14.36270 -13.69693 -13.24925 -12.96920 -12.78963 -12.49237 -12.07203 -11.83903 -11.66121 -11.37595 -11.13291 -10.98042 -10.81964 -10.75624 -10.59223 -10.56666 -10.26337 -9.93504 -9.61630 -9.48636 -9.39906 -9.21584 -8.74700 -8.31094 -7.15259 -5.95172 -3.97423 3.35072 3.39762 3.42466 4.44438 4.53390 4.97467 5.13324 5.34905 5.35601 5.48042 5.81384 6.01077 6.06232 6.11513 6.23435 6.26445 6.30108 6.42864 6.46785 6.50969 6.58487 6.69315 6.80631 6.88741 6.96194 7.10524 7.18832 7.27516 7.36631 7.58861 7.74245 7.93268 7.98450 8.25639 8.38420 8.64664 9.10114 9.65691 11.11909 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.011095 C = 0.009104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.697141 B = 2523.069174 C = 3074.895187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C 0.203 3.797 4 H 0.022 0.978 5 C -0.497 4.497 6 H 0.068 0.932 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.502 5.502 14 C 0.035 3.965 15 C -0.160 4.160 16 C 0.095 3.905 17 H 0.055 0.945 18 O -0.558 6.558 19 C 0.112 3.888 20 C -0.130 4.130 21 C -0.146 4.146 22 H 0.030 0.970 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.259 0.741 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.365 0.635 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.401 4.820 8.401 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.151 4.151 3 C 0.097 3.903 4 H 0.039 0.961 5 C -0.536 4.536 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.227 5.227 14 C -0.093 4.093 15 C -0.198 4.198 16 C 0.036 3.964 17 H 0.073 0.927 18 O -0.362 6.362 19 C 0.022 3.978 20 C -0.188 4.188 21 C -0.204 4.204 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.210 0.790 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.676 4.298 7.994 9.792 hybrid contribution -0.040 0.431 -0.379 0.575 sum -3.716 4.728 7.614 9.703 Atomic orbital electron populations 1.22396 0.99523 0.99599 1.00408 1.21585 0.91668 1.00053 1.01757 1.19614 0.96638 0.90835 0.83230 0.96061 1.21211 0.92229 1.42572 0.97550 0.91429 1.24926 0.97076 0.95679 0.96602 1.69927 1.32643 1.44503 1.06035 0.86706 0.85831 0.78390 0.77362 1.20326 1.21522 1.20343 1.65106 1.19426 1.09544 1.28638 1.23496 0.92583 0.97576 0.95596 1.23266 0.99296 0.97663 0.99561 1.22850 0.90781 0.88294 0.94503 0.92677 1.86657 1.50412 1.59085 1.40026 1.21466 0.93792 0.88823 0.93679 1.21914 0.95721 0.98718 1.02407 1.22021 1.01806 0.99123 0.97473 0.95102 0.93843 0.93011 0.94356 0.89419 0.93079 0.93919 0.90483 0.91737 0.90896 0.78972 0.89970 0.94296 0.93088 0.93749 0.94063 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.41 37.16 0.31 -2.99 16 2 C -0.11 -2.67 5.10 -26.73 -0.14 -2.80 16 3 C 0.20 4.97 1.02 -68.87 -0.07 4.90 16 4 H 0.02 0.59 5.25 -51.92 -0.27 0.32 16 5 C -0.50 -13.17 6.33 -34.44 -0.22 -13.39 16 6 H 0.07 1.79 5.40 -52.48 -0.28 1.51 16 7 C 0.06 1.58 5.21 -17.82 -0.09 1.48 16 8 N -0.89 -25.16 11.71 55.43 0.65 -24.51 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 13 N -0.50 -10.71 4.75 -208.51 -0.99 -11.70 16 14 C 0.04 0.65 4.33 -1.90 -0.01 0.65 16 15 C -0.16 -2.41 6.80 -24.87 -0.17 -2.58 16 16 C 0.10 1.55 3.96 -25.37 -0.10 1.45 16 17 H 0.06 0.82 7.69 -51.93 -0.40 0.42 16 18 O -0.56 -8.67 11.47 -35.23 -0.40 -9.07 16 19 C 0.11 2.22 0.73 -130.53 -0.09 2.12 16 20 C -0.13 -2.46 8.10 37.15 0.30 -2.16 16 21 C -0.15 -3.14 6.14 37.16 0.23 -2.91 16 22 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 23 H 0.04 0.92 7.55 -51.93 -0.39 0.53 16 24 H 0.05 0.94 4.53 -51.93 -0.24 0.70 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.09 2.34 6.23 -51.93 -0.32 2.02 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.04 0.84 6.48 -51.93 -0.34 0.50 16 29 H 0.08 1.38 6.34 -51.93 -0.33 1.05 16 30 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.36 3.81 9.10 45.56 0.41 4.23 16 33 H 0.08 1.74 5.53 -51.93 -0.29 1.45 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.04 1.00 7.27 -51.93 -0.38 0.62 16 37 H 0.04 0.82 7.67 -51.93 -0.40 0.42 16 38 H 0.08 2.04 5.99 -51.93 -0.31 1.73 16 LS Contribution 277.02 15.07 4.17 4.17 Total: -1.00 -28.59 277.02 -6.84 -35.43 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.20 Total: 5.74 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.05 Total: -16.22 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.34 Total: -36.21 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.40 Total: -9.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.59 -6.84 -35.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.904 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds