Wall clock time and date at job start Mon Mar 30 2020 03:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47425 * 2 1 4 4 H 1.09008 * 109.47124 * 315.94279 * 3 2 1 5 5 C 1.50697 * 109.47349 * 195.94517 * 3 2 1 6 6 H 1.08003 * 119.99495 * 244.46620 * 5 3 2 7 7 C 1.37875 * 120.00174 * 64.46090 * 5 3 2 8 8 N 1.31507 * 120.00048 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99961 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47235 * 60.00096 * 9 7 5 11 11 H 1.48498 * 109.47275 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47129 * 300.00603 * 9 7 5 13 13 N 1.46899 * 109.46988 * 75.93875 * 3 2 1 14 14 C 1.48529 * 111.00340 * 307.22504 * 13 3 2 15 15 C 1.54940 * 103.22745 * 200.28135 * 14 13 3 16 16 C 1.54596 * 102.92312 * 37.41292 * 15 14 13 17 17 H 1.08998 * 110.30384 * 219.02914 * 16 15 14 18 18 O 1.42897 * 110.30807 * 96.96138 * 16 15 14 19 19 C 1.47910 * 110.99935 * 189.82601 * 13 3 2 20 20 C 1.52994 * 109.91729 * 265.20141 * 19 13 3 21 21 C 1.53006 * 109.91281 * 26.49645 * 19 13 3 22 22 H 1.09008 * 109.47100 * 161.49229 * 1 2 3 23 23 H 1.08996 * 109.46894 * 41.49197 * 1 2 3 24 24 H 1.09005 * 109.46803 * 281.48691 * 1 2 3 25 25 H 1.09001 * 109.46894 * 120.00247 * 2 1 3 26 26 H 1.09000 * 109.46978 * 239.99634 * 2 1 3 27 27 H 0.96999 * 119.99927 * 179.97438 * 8 7 5 28 28 H 1.09002 * 110.66520 * 318.71453 * 14 13 3 29 29 H 1.08997 * 110.66632 * 81.67559 * 14 13 3 30 30 H 1.08997 * 110.72115 * 155.77535 * 15 14 13 31 31 H 1.09001 * 110.71945 * 279.05229 * 15 14 13 32 32 H 0.96703 * 114.00112 * 61.44727 * 18 16 15 33 33 H 1.08996 * 109.47275 * 67.45670 * 20 19 13 34 34 H 1.09006 * 109.46792 * 187.45933 * 20 19 13 35 35 H 1.08993 * 109.47330 * 307.45372 * 20 19 13 36 36 H 1.08997 * 109.47072 * 53.28493 * 21 19 13 37 37 H 1.09007 * 109.46693 * 173.28211 * 21 19 13 38 38 H 1.09001 * 109.46873 * 293.27862 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.4649 2.0312 -0.7147 5 6 3.4955 1.4606 -0.3903 6 1 4.2404 1.7913 0.3183 7 6 3.8761 1.0550 -1.6519 8 7 2.9689 0.6528 -2.5148 9 14 5.6803 1.0770 -2.1354 10 1 6.4473 0.1879 -1.2262 11 1 5.8239 0.5983 -3.5338 12 1 6.2040 2.4626 -2.0307 13 7 1.8860 2.0162 1.3435 14 6 0.4928 1.8583 1.8333 15 6 0.3842 2.9314 2.9457 16 6 1.2070 4.1080 2.3724 17 1 1.7847 4.5863 3.1633 18 8 0.3431 5.0585 1.7461 19 6 2.1465 3.4721 1.3311 20 6 3.6039 3.7441 1.7090 21 6 1.8487 4.0430 -0.0569 22 1 -0.3634 -0.9746 -0.3262 23 1 -0.3633 0.7697 -0.6808 24 1 -0.3633 0.2047 1.0071 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.2366 0.3678 -3.4025 28 1 -0.2210 2.0589 1.0343 29 1 0.3397 0.8596 2.2424 30 1 -0.6543 3.2250 3.0982 31 1 0.8244 2.5695 3.8749 32 1 -0.3006 5.4599 2.3458 33 1 4.2591 3.3697 0.9226 34 1 3.7544 4.8173 1.8271 35 1 3.8363 3.2394 2.6467 36 1 0.8400 3.7598 -0.3575 37 1 1.9274 5.1298 -0.0273 38 1 2.5668 3.6462 -0.7746 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306362085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:54 Heat of formation + Delta-G solvation = -54.486339 kcal Electronic energy + Delta-G solvation = -17685.674479 eV Core-core repulsion = 15141.742567 eV Total energy + Delta-G solvation = -2543.931912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07703 -37.46479 -35.19110 -34.15861 -32.70208 -30.54849 -28.27906 -27.93307 -25.96687 -24.50517 -22.30727 -21.48782 -19.50249 -18.30863 -17.83114 -17.09807 -16.58084 -16.16098 -15.27806 -14.88524 -14.68664 -14.25965 -14.13478 -13.64474 -13.57394 -13.37200 -12.90032 -12.85967 -12.67413 -12.53602 -12.43377 -12.32612 -12.21940 -11.83163 -11.68967 -11.45681 -11.05821 -11.00705 -10.70774 -10.59701 -10.35989 -8.88966 -8.03213 -6.10308 1.42846 1.43382 1.50252 2.46152 3.22819 3.28534 3.54949 3.84283 3.98046 4.18923 4.41725 4.49401 4.53773 4.58773 4.68487 4.72915 4.83407 4.85752 4.93646 4.97533 5.14366 5.17131 5.18783 5.23668 5.26765 5.34184 5.43581 5.56653 5.57726 5.69868 5.87237 5.89674 6.40058 6.50207 6.75756 7.04656 7.05925 7.56200 9.03004 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028749 B = 0.011095 C = 0.009104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.697141 B = 2523.069174 C = 3074.895187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.213 3.787 4 H -0.014 1.014 5 C -0.501 4.501 6 H 0.065 0.935 7 C 0.010 3.990 8 N -0.922 5.922 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.510 5.510 14 C 0.029 3.971 15 C -0.147 4.147 16 C 0.103 3.897 17 H 0.081 0.919 18 O -0.575 6.575 19 C 0.100 3.900 20 C -0.125 4.125 21 C -0.129 4.129 22 H 0.044 0.956 23 H 0.026 0.974 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.256 0.744 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.390 0.610 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.778 5.667 10.750 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.106 3.894 4 H 0.004 0.996 5 C -0.540 4.540 6 H 0.083 0.917 7 C -0.188 4.188 8 N -0.562 5.562 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.235 5.235 14 C -0.099 4.099 15 C -0.185 4.185 16 C 0.043 3.957 17 H 0.098 0.902 18 O -0.383 6.383 19 C 0.010 3.990 20 C -0.183 4.183 21 C -0.187 4.187 22 H 0.063 0.937 23 H 0.045 0.955 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.239 0.761 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.064 5.160 10.372 12.277 hybrid contribution 0.040 0.215 -1.096 1.117 sum -4.024 5.375 9.276 11.451 Atomic orbital electron populations 1.22261 0.96862 0.99840 1.01705 1.21442 0.94089 0.99235 0.99976 1.19310 0.94970 0.90843 0.84323 0.99610 1.21515 0.93442 1.41495 0.97509 0.91672 1.25609 1.00573 0.95759 0.96813 1.70062 1.34245 1.45762 1.06143 0.85813 0.81677 0.78485 0.76890 1.19777 1.21570 1.19833 1.65017 1.21597 1.10771 1.26114 1.23560 0.90469 0.99454 0.96407 1.23243 1.01123 0.95561 0.98523 1.22680 0.90702 0.88961 0.93332 0.90171 1.86594 1.51165 1.59057 1.41478 1.21649 0.95523 0.88150 0.93705 1.21836 0.94564 1.00223 1.01664 1.21799 0.99301 0.99561 0.98032 0.93735 0.95500 0.90327 0.94291 0.92857 0.93454 0.95445 0.89837 0.88852 0.89165 0.76067 0.93057 0.91989 0.91985 0.95702 0.92932 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 8.41 71.98 0.61 -5.45 16 2 C -0.11 -5.27 5.10 30.59 0.16 -5.11 16 3 C 0.21 10.68 1.02 44.17 0.04 10.72 16 4 H -0.01 -0.77 5.25 -2.38 -0.01 -0.78 16 5 C -0.50 -27.25 6.33 25.60 0.16 -27.09 16 6 H 0.07 3.51 5.40 -2.91 -0.02 3.50 16 7 C 0.01 0.58 5.21 84.66 0.44 1.02 16 8 N -0.92 -54.00 11.71 21.45 0.25 -53.75 16 9 Si 0.94 44.41 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 13 N -0.51 -21.41 4.75 -813.61 -3.86 -25.27 16 14 C 0.03 1.00 4.33 86.65 0.38 1.38 16 15 C -0.15 -3.82 6.80 31.80 0.22 -3.60 16 16 C 0.10 2.97 3.96 31.47 0.12 3.09 16 17 H 0.08 1.98 7.69 -2.39 -0.02 1.96 16 18 O -0.57 -15.96 11.47 -148.98 -1.71 -17.67 16 19 C 0.10 3.80 0.73 3.67 0.00 3.81 16 20 C -0.13 -4.54 8.10 71.98 0.58 -3.96 16 21 C -0.13 -5.60 6.14 71.98 0.44 -5.15 16 22 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 23 H 0.03 1.14 7.55 -2.39 -0.02 1.13 16 24 H 0.08 2.73 4.53 -2.38 -0.01 2.72 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.94 6.23 -2.39 -0.01 2.93 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.03 1.04 6.48 -2.39 -0.02 1.03 16 29 H 0.08 2.77 6.34 -2.39 -0.02 2.76 16 30 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 31 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.39 6.48 9.10 -74.06 -0.67 5.81 16 33 H 0.05 2.16 5.53 -2.39 -0.01 2.15 16 34 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.02 1.13 7.27 -2.39 -0.02 1.11 16 37 H 0.05 2.09 7.67 -2.38 -0.02 2.07 16 38 H 0.04 2.26 5.99 -2.39 -0.01 2.25 16 Total: -1.00 -63.53 277.02 0.23 -63.30 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.38 Total: 17.31 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.15 Total: -30.35 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -3.61 Total: -79.02 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.71 Total: -17.67 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.53 0.23 -63.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306362085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.811 kcal (2) G-P(sol) polarization free energy of solvation -63.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds