Wall clock time and date at job start Mon Mar 30 2020 03:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 H 1.09003 * 109.46646 * 304.99406 * 3 2 1 5 5 C 1.50702 * 109.47065 * 184.99756 * 3 2 1 6 6 H 1.07997 * 120.00049 * 239.99569 * 5 3 2 7 7 C 1.37874 * 120.00156 * 60.00137 * 5 3 2 8 8 N 1.31520 * 119.99785 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00180 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47467 * 89.99759 * 9 7 5 11 11 H 1.48507 * 109.47003 * 209.99682 * 9 7 5 12 12 H 1.48494 * 109.47013 * 329.99413 * 9 7 5 13 13 N 1.46900 * 109.47077 * 64.99543 * 3 2 1 14 14 C 1.46929 * 110.98461 * 190.27773 * 13 3 2 15 15 C 1.53037 * 109.47910 * 174.18240 * 14 13 3 16 16 H 1.09002 * 109.50283 * 299.19589 * 15 14 13 17 17 C 1.53002 * 109.50160 * 179.11929 * 15 14 13 18 18 C 1.53114 * 109.31211 * 59.15772 * 15 14 13 19 19 C 1.53126 * 109.16239 * 302.32855 * 18 15 14 20 20 H 1.08997 * 109.50509 * 177.59319 * 19 18 15 21 21 O 1.42900 * 109.49797 * 297.71401 * 19 18 15 22 22 C 1.46850 * 110.99740 * 66.04988 * 13 3 2 23 23 H 1.09005 * 109.46432 * 60.00592 * 1 2 3 24 24 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46998 * 300.00522 * 1 2 3 26 26 H 1.08997 * 109.47493 * 239.99572 * 2 1 3 27 27 H 1.09004 * 109.47060 * 120.00106 * 2 1 3 28 28 H 0.97004 * 119.99960 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.51866 * 54.15475 * 14 13 3 30 30 H 1.09007 * 109.45009 * 294.16157 * 14 13 3 31 31 H 1.09003 * 109.47116 * 300.07636 * 17 15 14 32 32 H 1.08996 * 109.47415 * 60.08008 * 17 15 14 33 33 H 1.09000 * 109.47041 * 180.02562 * 17 15 14 34 34 H 1.09006 * 109.52545 * 62.23190 * 18 15 14 35 35 H 1.09002 * 109.52724 * 182.41937 * 18 15 14 36 36 H 0.96698 * 113.99742 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.46198 * 65.82029 * 22 13 3 38 38 H 1.08995 * 109.45893 * 305.84904 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3809 10 1 6.5539 -0.3521 -0.7596 11 1 6.3837 0.9212 -2.8163 12 1 6.5576 2.0718 -0.6888 13 7 1.6514 2.0993 1.2552 14 6 1.9065 3.5449 1.1936 15 6 1.3582 4.2142 2.4558 16 1 0.2823 4.0498 2.5168 17 6 1.6431 5.7165 2.4023 18 6 2.0385 3.6084 3.6865 19 6 1.7980 2.0962 3.7004 20 1 2.3158 1.6531 4.5510 21 8 0.3967 1.8370 3.8060 22 6 2.3338 1.4875 2.4025 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8294 -0.0620 -2.9494 29 1 1.4138 3.9647 0.3166 30 1 2.9801 3.7215 1.1260 31 1 2.7190 5.8803 2.3414 32 1 1.1597 6.1470 1.5254 33 1 1.2527 6.1926 3.3018 34 1 3.1096 3.8065 3.6452 35 1 1.6197 4.0521 4.5898 36 1 0.1706 0.8969 3.8200 37 1 3.4053 1.6736 2.3293 38 1 2.1512 0.4129 2.4029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306696712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:50 Heat of formation + Delta-G solvation = -63.837589 kcal Electronic energy + Delta-G solvation = -17280.215112 eV Core-core repulsion = 14735.877700 eV Total energy + Delta-G solvation = -2544.337412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.95687 -35.77971 -34.57320 -32.16127 -30.90002 -29.74156 -26.59425 -26.05220 -23.77707 -22.03047 -21.51586 -19.16193 -18.97486 -16.77008 -15.72167 -15.51112 -14.60004 -14.45885 -14.00202 -13.68479 -13.10508 -12.91128 -12.55308 -12.29482 -11.96375 -11.80974 -11.47312 -11.40310 -11.16317 -11.00493 -10.87063 -10.56424 -10.42098 -10.11065 -9.99219 -9.91343 -9.61531 -9.29362 -9.21274 -8.93180 -8.35841 -7.01930 -5.97808 -4.12111 3.24972 3.32668 3.35009 4.38637 4.70065 5.07054 5.18898 5.25657 5.36116 5.48105 5.65410 5.90445 5.96619 6.03955 6.14336 6.23224 6.27598 6.33750 6.49677 6.50945 6.53329 6.60486 6.65848 6.72161 6.80163 7.01653 7.14629 7.22659 7.39451 7.62671 7.76928 8.01373 8.14721 8.18577 8.38365 8.52558 8.99177 9.55465 11.00391 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.009894 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.013964 B = 2829.184183 C = 3301.174321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.522 5.522 14 C 0.071 3.929 15 C -0.086 4.086 16 H 0.079 0.921 17 C -0.144 4.144 18 C -0.104 4.104 19 C 0.105 3.895 20 H 0.043 0.957 21 O -0.556 6.556 22 C 0.032 3.968 23 H 0.037 0.963 24 H 0.023 0.977 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.061 0.939 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.370 0.630 37 H 0.043 0.957 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 3.645 8.826 9.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.246 5.246 14 C -0.058 4.058 15 C -0.105 4.105 16 H 0.098 0.902 17 C -0.202 4.202 18 C -0.141 4.141 19 C 0.046 3.954 20 H 0.061 0.939 21 O -0.361 6.361 22 C -0.097 4.097 23 H 0.057 0.943 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.216 0.784 37 H 0.061 0.939 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.438 4.143 8.693 10.225 hybrid contribution 2.159 -0.604 -0.356 2.270 sum -1.279 3.539 8.338 9.148 Atomic orbital electron populations 1.21710 0.98771 0.98279 1.00800 1.21579 0.92318 0.99177 1.01664 1.19285 0.92893 0.91226 0.85953 0.94501 1.21758 0.92988 1.38003 1.05431 0.92676 1.24911 0.97714 0.95114 0.95693 1.69880 1.34711 1.38298 1.09441 0.86702 0.86358 0.78319 0.77253 1.20741 1.21188 1.20118 1.62311 1.56537 1.01618 1.04114 1.21895 0.98278 0.89695 0.95930 1.21113 1.01240 0.93389 0.94787 0.90248 1.21800 1.01188 0.96225 1.01016 1.21581 1.00094 0.93976 0.98461 1.21907 0.82026 0.95737 0.95706 0.93901 1.86449 1.23454 1.29402 1.96781 1.22591 0.97128 0.99013 0.90983 0.94337 0.95767 0.93023 0.89114 0.95164 0.92924 0.92047 0.95085 0.93123 0.92835 0.93289 0.91511 0.92315 0.78361 0.93920 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.56 5.17 -26.73 -0.14 -2.70 16 3 C 0.21 5.21 1.70 -68.86 -0.12 5.09 16 4 H 0.04 1.02 7.98 -51.93 -0.41 0.60 16 5 C -0.54 -14.37 7.23 -34.44 -0.25 -14.62 16 6 H 0.06 1.47 5.85 -52.49 -0.31 1.17 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -10.95 3.94 -228.01 -0.90 -11.85 16 14 C 0.07 1.39 4.48 -3.79 -0.02 1.38 16 15 C -0.09 -1.42 2.73 -90.54 -0.25 -1.66 16 16 H 0.08 1.41 7.80 -51.93 -0.40 1.01 16 17 C -0.14 -1.99 9.20 37.16 0.34 -1.65 16 18 C -0.10 -1.60 5.01 -26.61 -0.13 -1.73 16 19 C 0.11 1.69 3.81 -26.65 -0.10 1.59 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 O -0.56 -8.93 12.65 -35.23 -0.45 -9.38 16 22 C 0.03 0.61 4.44 -3.83 -0.02 0.59 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 1.02 7.75 -51.93 -0.40 0.62 16 26 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 27 H 0.03 0.69 6.23 -51.93 -0.32 0.37 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.06 1.24 8.01 -51.93 -0.42 0.83 16 30 H 0.03 0.66 7.31 -51.92 -0.38 0.28 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.37 4.79 9.08 45.56 0.41 5.21 16 37 H 0.04 0.89 6.36 -51.93 -0.33 0.56 16 38 H 0.07 1.37 6.13 -51.93 -0.32 1.05 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -27.98 289.52 -7.49 -35.48 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.71 Total: 3.96 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.41 Total: -14.42 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.27 Total: -36.01 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.45 Total: -9.38 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.98 -7.49 -35.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306696712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.361 kcal (2) G-P(sol) polarization free energy of solvation -27.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds