Wall clock time and date at job start Mon Mar 30 2020 03:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 H 1.09003 * 109.46646 * 304.99406 * 3 2 1 5 5 C 1.50702 * 109.47065 * 184.99756 * 3 2 1 6 6 H 1.07997 * 120.00049 * 239.99569 * 5 3 2 7 7 C 1.37874 * 120.00156 * 60.00137 * 5 3 2 8 8 N 1.31520 * 119.99785 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00180 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47467 * 89.99759 * 9 7 5 11 11 H 1.48507 * 109.47003 * 209.99682 * 9 7 5 12 12 H 1.48494 * 109.47013 * 329.99413 * 9 7 5 13 13 N 1.46900 * 109.47077 * 64.99543 * 3 2 1 14 14 C 1.46929 * 110.98461 * 190.27773 * 13 3 2 15 15 C 1.53037 * 109.47910 * 174.18240 * 14 13 3 16 16 H 1.09002 * 109.50283 * 299.19589 * 15 14 13 17 17 C 1.53002 * 109.50160 * 179.11929 * 15 14 13 18 18 C 1.53114 * 109.31211 * 59.15772 * 15 14 13 19 19 C 1.53126 * 109.16239 * 302.32855 * 18 15 14 20 20 H 1.08997 * 109.50509 * 177.59319 * 19 18 15 21 21 O 1.42900 * 109.49797 * 297.71401 * 19 18 15 22 22 C 1.46850 * 110.99740 * 66.04988 * 13 3 2 23 23 H 1.09005 * 109.46432 * 60.00592 * 1 2 3 24 24 H 1.09001 * 109.47239 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46998 * 300.00522 * 1 2 3 26 26 H 1.08997 * 109.47493 * 239.99572 * 2 1 3 27 27 H 1.09004 * 109.47060 * 120.00106 * 2 1 3 28 28 H 0.97004 * 119.99960 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.51866 * 54.15475 * 14 13 3 30 30 H 1.09007 * 109.45009 * 294.16157 * 14 13 3 31 31 H 1.09003 * 109.47116 * 300.07636 * 17 15 14 32 32 H 1.08996 * 109.47415 * 60.08008 * 17 15 14 33 33 H 1.09000 * 109.47041 * 180.02562 * 17 15 14 34 34 H 1.09006 * 109.52545 * 62.23190 * 18 15 14 35 35 H 1.09002 * 109.52724 * 182.41937 * 18 15 14 36 36 H 0.96698 * 113.99742 * 179.97438 * 21 19 18 37 37 H 1.08997 * 109.46198 * 65.82029 * 22 13 3 38 38 H 1.08995 * 109.45893 * 305.84904 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3809 10 1 6.5539 -0.3521 -0.7596 11 1 6.3837 0.9212 -2.8163 12 1 6.5576 2.0718 -0.6888 13 7 1.6514 2.0993 1.2552 14 6 1.9065 3.5449 1.1936 15 6 1.3582 4.2142 2.4558 16 1 0.2823 4.0498 2.5168 17 6 1.6431 5.7165 2.4023 18 6 2.0385 3.6084 3.6865 19 6 1.7980 2.0962 3.7004 20 1 2.3158 1.6531 4.5510 21 8 0.3967 1.8370 3.8060 22 6 2.3338 1.4875 2.4025 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.8294 -0.0620 -2.9494 29 1 1.4138 3.9647 0.3166 30 1 2.9801 3.7215 1.1260 31 1 2.7190 5.8803 2.3414 32 1 1.1597 6.1470 1.5254 33 1 1.2527 6.1926 3.3018 34 1 3.1096 3.8065 3.6452 35 1 1.6197 4.0521 4.5898 36 1 0.1706 0.8969 3.8200 37 1 3.4053 1.6736 2.3293 38 1 2.1512 0.4129 2.4029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306696712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:50 Heat of formation + Delta-G solvation = -82.907865 kcal Electronic energy + Delta-G solvation = -17281.042061 eV Core-core repulsion = 14735.877700 eV Total energy + Delta-G solvation = -2545.164361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45860 -37.36473 -35.99966 -34.08071 -32.60730 -31.12970 -28.50780 -27.39015 -25.59341 -23.72051 -22.91622 -20.81868 -20.54667 -18.55811 -17.25983 -17.22687 -16.29172 -16.01275 -15.39684 -15.25574 -14.78774 -14.64522 -14.05790 -13.81545 -13.31390 -13.23345 -13.16825 -13.09959 -12.80622 -12.68939 -12.43894 -12.37253 -12.01998 -11.73997 -11.57684 -11.49759 -11.38761 -11.03079 -10.84642 -10.46629 -10.39398 -8.83608 -8.01797 -6.26416 1.35018 1.37108 1.45451 2.38617 3.14238 3.32456 3.69211 3.89918 4.03268 4.17109 4.31071 4.54043 4.59714 4.67334 4.76833 4.78805 4.86780 4.90932 4.98074 5.01039 5.02363 5.07409 5.14065 5.28507 5.32937 5.40601 5.44673 5.53047 5.59592 5.67367 5.80509 6.08954 6.21448 6.41941 6.71732 6.96881 7.07723 7.44766 8.91338 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.009894 C = 0.008480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.013964 B = 2829.184183 C = 3301.174321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.218 3.782 4 H -0.003 1.003 5 C -0.551 4.551 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.519 5.519 14 C 0.071 3.929 15 C -0.078 4.078 16 H 0.069 0.931 17 C -0.139 4.139 18 C -0.104 4.104 19 C 0.113 3.887 20 H 0.070 0.930 21 O -0.565 6.565 22 C 0.034 3.966 23 H 0.027 0.973 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.045 0.955 30 H 0.011 0.989 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.384 0.616 37 H 0.022 0.978 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 4.031 10.728 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.015 0.985 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.243 5.243 14 C -0.057 4.057 15 C -0.097 4.097 16 H 0.087 0.913 17 C -0.197 4.197 18 C -0.142 4.142 19 C 0.054 3.946 20 H 0.088 0.912 21 O -0.372 6.372 22 C -0.095 4.095 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.232 0.768 37 H 0.040 0.960 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.407 4.526 10.612 12.029 hybrid contribution 2.119 -0.726 -0.957 2.435 sum -1.288 3.801 9.655 10.456 Atomic orbital electron populations 1.21560 0.96287 0.99719 1.00654 1.21410 0.94473 0.98015 1.00223 1.19060 0.91696 0.91664 0.86493 0.98532 1.21984 0.94149 1.37579 1.05252 0.93295 1.25618 1.01742 0.95003 0.95538 1.70011 1.36223 1.38958 1.09823 0.85757 0.81537 0.78384 0.77157 1.20098 1.20968 1.19873 1.62282 1.56486 1.02225 1.03266 1.21936 0.97022 0.89210 0.97553 1.21020 1.00345 0.94941 0.93351 0.91264 1.21761 1.01470 0.94227 1.02265 1.21630 1.00411 0.93546 0.98600 1.21866 0.82264 0.96152 0.94369 0.91177 1.86425 1.23204 1.30920 1.96614 1.22654 0.95917 0.98984 0.91953 0.95390 0.93503 0.92138 0.92189 0.94805 0.92970 0.93645 0.97076 0.92971 0.92790 0.90946 0.91100 0.90066 0.76777 0.95981 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.80 71.98 0.71 -4.33 16 2 C -0.10 -4.89 5.17 30.60 0.16 -4.74 16 3 C 0.22 10.99 1.70 44.17 0.08 11.07 16 4 H 0.00 -0.19 7.98 -2.39 -0.02 -0.21 16 5 C -0.55 -29.83 7.23 25.60 0.19 -29.64 16 6 H 0.05 2.66 5.85 -2.91 -0.02 2.65 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -52.25 11.29 21.45 0.24 -52.01 16 9 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.52 -21.92 3.94 -875.28 -3.45 -25.37 16 14 C 0.07 2.84 4.48 86.31 0.39 3.23 16 15 C -0.08 -2.43 2.73 -10.74 -0.03 -2.46 16 16 H 0.07 2.33 7.80 -2.39 -0.02 2.32 16 17 C -0.14 -3.54 9.20 71.98 0.66 -2.88 16 18 C -0.10 -2.93 5.01 30.67 0.15 -2.77 16 19 C 0.11 3.32 3.81 30.65 0.12 3.44 16 20 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 21 O -0.57 -16.54 12.65 -148.98 -1.88 -18.43 16 22 C 0.03 1.27 4.44 86.33 0.38 1.65 16 23 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 26 H 0.06 3.25 5.95 -2.39 -0.01 3.23 16 27 H 0.03 1.55 6.23 -2.38 -0.01 1.53 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.04 1.90 8.01 -2.39 -0.02 1.88 16 30 H 0.01 0.48 7.31 -2.38 -0.02 0.46 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.38 8.85 9.08 -74.06 -0.67 8.18 16 37 H 0.02 0.92 6.36 -2.39 -0.02 0.91 16 38 H 0.07 2.50 6.13 -2.39 -0.01 2.48 16 Total: -1.00 -60.42 289.52 0.54 -59.88 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.35 Total: 16.14 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 3.25 Total: -25.83 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -3.21 Total: -77.38 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -1.88 Total: -18.43 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -60.42 0.54 -59.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306696712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.027 kcal (2) G-P(sol) polarization free energy of solvation -60.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds