Wall clock time and date at job start Mon Mar 30 2020 03:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47294 * 2 1 4 4 H 1.08994 * 109.47237 * 304.31379 * 3 2 1 5 5 C 1.50698 * 109.47063 * 184.30891 * 3 2 1 6 6 H 1.08005 * 120.00238 * 245.36967 * 5 3 2 7 7 C 1.37878 * 120.00025 * 65.36943 * 5 3 2 8 8 N 1.31518 * 120.00174 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99878 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47379 * 270.00356 * 9 7 5 11 11 H 1.48500 * 109.46907 * 150.00086 * 9 7 5 12 12 H 1.48504 * 109.46831 * 30.00453 * 9 7 5 13 13 N 1.46899 * 109.46723 * 64.31287 * 3 2 1 14 14 C 1.47639 * 110.99940 * 215.32528 * 13 3 2 15 15 C 1.50894 * 108.77349 * 153.50915 * 14 13 3 16 16 C 1.53616 * 111.71328 * 91.01024 * 15 14 13 17 17 O 1.44082 * 112.55555 * 318.63785 * 16 15 14 18 18 C 1.40626 * 116.72918 * 318.11254 * 17 16 15 19 19 C 1.40448 * 111.00397 * 87.02848 * 13 3 2 20 20 H 1.08994 * 109.03924 * 67.72314 * 19 13 3 21 21 C 1.52998 * 109.03036 * 308.79009 * 19 13 3 22 22 H 1.09005 * 109.46644 * 294.95025 * 1 2 3 23 23 H 1.09002 * 109.46852 * 54.94346 * 1 2 3 24 24 H 1.08996 * 109.47433 * 174.95419 * 1 2 3 25 25 H 1.09003 * 109.47011 * 240.00167 * 2 1 3 26 26 H 1.09002 * 109.46845 * 120.00211 * 2 1 3 27 27 H 0.97002 * 119.99592 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.58521 * 273.29606 * 14 13 3 29 29 H 1.09003 * 109.58903 * 33.72212 * 14 13 3 30 30 H 1.08995 * 109.02885 * 330.43934 * 15 14 13 31 31 H 1.08999 * 108.97398 * 211.54831 * 15 14 13 32 32 H 1.09007 * 108.86574 * 197.84536 * 16 15 14 33 33 H 1.09001 * 108.79020 * 79.37927 * 16 15 14 34 34 H 1.08992 * 109.52910 * 334.00973 * 18 17 16 35 35 H 1.09005 * 109.53054 * 213.80040 * 18 17 16 36 36 H 1.09003 * 109.47241 * 66.63048 * 21 19 13 37 37 H 1.09004 * 109.46934 * 186.62333 * 21 19 13 38 38 H 1.09001 * 109.47385 * 306.62839 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6150 1.9782 -0.8488 5 6 3.5432 1.4438 -0.1068 6 1 4.1425 1.8126 0.7126 7 6 4.1536 0.9741 -1.2504 8 7 5.4654 0.9756 -1.3438 9 14 3.1171 0.3354 -2.6672 10 1 2.8831 -1.1205 -2.4924 11 1 3.8303 0.5720 -3.9481 12 1 1.8140 1.0474 -2.6874 13 7 1.6373 2.1042 1.2481 14 6 1.3217 3.5274 1.0145 15 6 0.3395 3.9857 2.0643 16 6 1.0527 4.5608 3.2974 17 8 2.2094 3.7898 3.6764 18 6 2.0794 2.3903 3.6307 19 6 2.5811 1.8804 2.2638 20 1 3.5065 2.3971 2.0094 21 6 2.8594 0.3793 2.3643 22 1 -0.3633 0.4335 0.9318 23 1 -0.3633 0.5903 -0.8413 24 1 -0.3634 -1.0236 -0.0904 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.8947 0.6448 -2.1483 28 1 2.2338 4.1201 1.0839 29 1 0.8806 3.6462 0.0248 30 1 -0.2737 3.1385 2.3713 31 1 -0.3046 4.7536 1.6359 32 1 0.3525 4.5797 4.1326 33 1 1.3659 5.5814 3.0776 34 1 1.0321 2.1173 3.7594 35 1 2.6741 1.9429 4.4272 36 1 3.3590 0.0408 1.4566 37 1 3.4995 0.1854 3.2251 38 1 1.9183 -0.1576 2.4830 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306833295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:29 Heat of formation + Delta-G solvation = -18.281024 kcal Electronic energy + Delta-G solvation = -17673.000455 eV Core-core repulsion = 15130.638524 eV Total energy + Delta-G solvation = -2542.361931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.57733 -36.89092 -33.28573 -32.59963 -31.81690 -29.13950 -27.61899 -25.61834 -24.23867 -22.78797 -20.50511 -20.28090 -19.17417 -17.01171 -16.21865 -15.51458 -15.09609 -14.71858 -14.60213 -13.72367 -13.34246 -12.92717 -12.75023 -12.22779 -12.10514 -11.99374 -11.72564 -11.39804 -11.13887 -11.10991 -10.77373 -10.51632 -10.37214 -10.27358 -10.05435 -9.84742 -9.56987 -9.41016 -9.06127 -8.71283 -8.54777 -7.04655 -6.09828 -4.08938 3.26255 3.36825 3.38583 4.20862 4.38517 4.82070 5.17431 5.20466 5.31999 5.52606 5.71413 5.80161 5.90391 5.94527 6.01980 6.08353 6.09657 6.22227 6.29118 6.39560 6.43676 6.47151 6.61605 6.69802 6.73241 6.81435 7.01702 7.07904 7.16129 7.35089 7.40949 7.62354 7.76101 8.14177 8.41301 8.58345 8.94722 9.52527 11.01439 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.010398 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.026445 B = 2692.303482 C = 2874.167292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.186 3.814 4 H 0.031 0.969 5 C -0.545 4.545 6 H 0.090 0.910 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.265 1.265 13 N -0.538 5.538 14 C 0.069 3.931 15 C -0.152 4.152 16 C 0.066 3.934 17 O -0.392 6.392 18 C 0.068 3.932 19 C 0.080 3.920 20 H 0.054 0.946 21 C -0.157 4.157 22 H 0.057 0.943 23 H 0.036 0.964 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.263 0.737 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.034 0.966 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.783 2.353 6.405 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C 0.079 3.921 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.107 0.893 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.190 1.190 13 N -0.262 5.262 14 C -0.058 4.058 15 C -0.190 4.190 16 C -0.010 4.010 17 O -0.311 6.311 18 C -0.009 4.009 19 C -0.031 4.031 20 H 0.071 0.929 21 C -0.214 4.214 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.053 0.947 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.866 2.200 6.508 12.022 hybrid contribution 0.001 -0.153 -1.288 1.297 sum -9.866 2.047 5.220 11.348 Atomic orbital electron populations 1.21702 0.97980 0.98922 1.01187 1.22441 0.93761 0.99718 1.01857 1.19721 0.94685 0.90738 0.86945 0.95087 1.21775 0.90575 1.42610 1.03305 0.89260 1.24971 0.94648 0.95161 0.97996 1.69916 1.08487 1.46660 1.28345 0.86942 0.80820 0.79574 0.81794 1.20361 1.22451 1.18953 1.59559 1.46457 1.11507 1.08690 1.21592 0.97546 0.89604 0.97097 1.22057 0.99306 1.01151 0.96478 1.22866 0.87810 0.94881 0.95439 1.87463 1.37412 1.18416 1.87768 1.22723 1.00334 0.80433 0.97433 1.20899 0.94873 0.96874 0.90412 0.92863 1.22490 1.00393 0.95011 1.03518 0.92385 0.94447 0.95041 0.93903 0.89866 0.92694 0.94055 0.91591 0.90814 0.91410 0.94043 0.90271 0.93193 0.90275 0.87416 0.94664 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.73 37.16 0.36 -2.17 16 2 C -0.14 -2.95 4.64 -26.73 -0.12 -3.08 16 3 C 0.19 4.22 1.28 -68.87 -0.09 4.14 16 4 H 0.03 0.75 5.93 -51.93 -0.31 0.44 16 5 C -0.54 -14.45 6.57 -34.44 -0.23 -14.68 16 6 H 0.09 2.59 5.21 -52.48 -0.27 2.32 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 9 Si 0.88 21.53 24.68 -169.99 -4.19 17.33 16 10 H -0.28 -6.65 6.86 56.52 0.39 -6.26 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.26 -6.27 6.39 56.52 0.36 -5.91 16 13 N -0.54 -10.70 3.34 -224.70 -0.75 -11.45 16 14 C 0.07 1.27 5.32 -4.47 -0.02 1.24 16 15 C -0.15 -2.19 5.41 -27.47 -0.15 -2.34 16 16 C 0.07 0.94 6.72 37.48 0.25 1.19 16 17 O -0.39 -6.86 10.12 -34.27 -0.35 -7.20 16 18 C 0.07 1.15 5.78 37.82 0.22 1.37 16 19 C 0.08 1.59 1.72 -70.39 -0.12 1.47 16 20 H 0.05 1.27 5.91 -51.93 -0.31 0.96 16 21 C -0.16 -3.04 7.08 37.16 0.26 -2.78 16 22 H 0.06 1.00 7.88 -51.93 -0.41 0.59 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.97 3.98 -51.93 -0.21 0.76 16 26 H 0.08 1.71 3.85 -51.93 -0.20 1.51 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.04 0.83 7.64 -51.93 -0.40 0.44 16 29 H 0.07 1.19 7.35 -51.93 -0.38 0.81 16 30 H 0.07 1.09 7.39 -51.93 -0.38 0.71 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.79 7.11 -51.93 -0.37 0.42 16 35 H 0.08 1.23 7.89 -51.93 -0.41 0.82 16 36 H 0.11 2.45 4.34 -51.93 -0.23 2.22 16 37 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 38 H 0.05 0.89 6.86 -51.93 -0.36 0.53 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -28.64 270.46 -6.12 -34.76 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.94 Total: 2.12 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 0.27 Total: -13.64 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.02 Total: -37.44 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.35 Total: -7.20 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.19 Total: 17.33 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.64 -6.12 -34.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306833295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.475 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds