Wall clock time and date at job start Mon Mar 30 2020 03:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47294 * 2 1 4 4 H 1.08994 * 109.47237 * 304.31379 * 3 2 1 5 5 C 1.50698 * 109.47063 * 184.30891 * 3 2 1 6 6 H 1.08005 * 120.00238 * 245.36967 * 5 3 2 7 7 C 1.37878 * 120.00025 * 65.36943 * 5 3 2 8 8 N 1.31518 * 120.00174 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99878 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47379 * 270.00356 * 9 7 5 11 11 H 1.48500 * 109.46907 * 150.00086 * 9 7 5 12 12 H 1.48504 * 109.46831 * 30.00453 * 9 7 5 13 13 N 1.46899 * 109.46723 * 64.31287 * 3 2 1 14 14 C 1.47639 * 110.99940 * 215.32528 * 13 3 2 15 15 C 1.50894 * 108.77349 * 153.50915 * 14 13 3 16 16 C 1.53616 * 111.71328 * 91.01024 * 15 14 13 17 17 O 1.44082 * 112.55555 * 318.63785 * 16 15 14 18 18 C 1.40626 * 116.72918 * 318.11254 * 17 16 15 19 19 C 1.40448 * 111.00397 * 87.02848 * 13 3 2 20 20 H 1.08994 * 109.03924 * 67.72314 * 19 13 3 21 21 C 1.52998 * 109.03036 * 308.79009 * 19 13 3 22 22 H 1.09005 * 109.46644 * 294.95025 * 1 2 3 23 23 H 1.09002 * 109.46852 * 54.94346 * 1 2 3 24 24 H 1.08996 * 109.47433 * 174.95419 * 1 2 3 25 25 H 1.09003 * 109.47011 * 240.00167 * 2 1 3 26 26 H 1.09002 * 109.46845 * 120.00211 * 2 1 3 27 27 H 0.97002 * 119.99592 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.58521 * 273.29606 * 14 13 3 29 29 H 1.09003 * 109.58903 * 33.72212 * 14 13 3 30 30 H 1.08995 * 109.02885 * 330.43934 * 15 14 13 31 31 H 1.08999 * 108.97398 * 211.54831 * 15 14 13 32 32 H 1.09007 * 108.86574 * 197.84536 * 16 15 14 33 33 H 1.09001 * 108.79020 * 79.37927 * 16 15 14 34 34 H 1.08992 * 109.52910 * 334.00973 * 18 17 16 35 35 H 1.09005 * 109.53054 * 213.80040 * 18 17 16 36 36 H 1.09003 * 109.47241 * 66.63048 * 21 19 13 37 37 H 1.09004 * 109.46934 * 186.62333 * 21 19 13 38 38 H 1.09001 * 109.47385 * 306.62839 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6150 1.9782 -0.8488 5 6 3.5432 1.4438 -0.1068 6 1 4.1425 1.8126 0.7126 7 6 4.1536 0.9741 -1.2504 8 7 5.4654 0.9756 -1.3438 9 14 3.1171 0.3354 -2.6672 10 1 2.8831 -1.1205 -2.4924 11 1 3.8303 0.5720 -3.9481 12 1 1.8140 1.0474 -2.6874 13 7 1.6373 2.1042 1.2481 14 6 1.3217 3.5274 1.0145 15 6 0.3395 3.9857 2.0643 16 6 1.0527 4.5608 3.2974 17 8 2.2094 3.7898 3.6764 18 6 2.0794 2.3903 3.6307 19 6 2.5811 1.8804 2.2638 20 1 3.5065 2.3971 2.0094 21 6 2.8594 0.3793 2.3643 22 1 -0.3633 0.4335 0.9318 23 1 -0.3633 0.5903 -0.8413 24 1 -0.3634 -1.0236 -0.0904 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.8947 0.6448 -2.1483 28 1 2.2338 4.1201 1.0839 29 1 0.8806 3.6462 0.0248 30 1 -0.2737 3.1385 2.3713 31 1 -0.3046 4.7536 1.6359 32 1 0.3525 4.5797 4.1326 33 1 1.3659 5.5814 3.0776 34 1 1.0321 2.1173 3.7594 35 1 2.6741 1.9429 4.4272 36 1 3.3590 0.0408 1.4566 37 1 3.4995 0.1854 3.2251 38 1 1.9183 -0.1576 2.4830 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306833295.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:28 Heat of formation + Delta-G solvation = -38.239290 kcal Electronic energy + Delta-G solvation = -17673.865911 eV Core-core repulsion = 15130.638524 eV Total energy + Delta-G solvation = -2543.227387 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.10471 -38.36769 -34.89769 -34.22075 -33.63721 -30.63776 -29.27587 -27.20676 -25.67074 -24.54667 -22.09561 -21.60990 -20.93451 -18.90204 -17.62156 -17.07774 -16.58903 -16.43042 -16.08689 -15.34212 -14.94063 -14.47649 -14.40177 -14.00778 -13.76206 -13.43886 -13.21001 -12.95507 -12.82997 -12.46577 -12.45951 -12.07919 -11.98290 -11.82960 -11.61759 -11.38173 -11.29832 -11.18534 -10.71864 -10.66092 -10.18491 -8.78759 -8.26419 -6.27554 1.30186 1.34254 1.43680 2.32615 2.97634 3.07243 3.29518 3.95895 4.09817 4.23988 4.29162 4.45246 4.47391 4.52928 4.57422 4.69759 4.72269 4.77617 4.87438 4.89932 5.02621 5.04590 5.11537 5.16169 5.23868 5.33411 5.39203 5.47004 5.54433 5.60469 5.73838 5.77368 6.19432 6.49924 6.52178 6.77104 6.90482 7.37195 8.88387 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.010398 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.026445 B = 2692.303482 C = 2874.167292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.140 4.140 3 C 0.189 3.811 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.937 3.063 10 H -0.266 1.266 11 H -0.303 1.303 12 H -0.249 1.249 13 N -0.524 5.524 14 C 0.065 3.935 15 C -0.141 4.141 16 C 0.059 3.941 17 O -0.416 6.416 18 C 0.079 3.921 19 C 0.081 3.919 20 H 0.001 0.999 21 C -0.149 4.149 22 H 0.068 0.932 23 H 0.037 0.963 24 H 0.053 0.947 25 H 0.027 0.973 26 H 0.086 0.914 27 H 0.262 0.738 28 H 0.011 0.989 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 2.198 7.316 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.178 4.178 3 C 0.081 3.919 4 H 0.039 0.961 5 C -0.570 4.570 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.231 1.231 12 H -0.173 1.173 13 N -0.248 5.248 14 C -0.063 4.063 15 C -0.179 4.179 16 C -0.017 4.017 17 O -0.335 6.335 18 C 0.002 3.998 19 C -0.030 4.030 20 H 0.019 0.981 21 C -0.206 4.206 22 H 0.087 0.913 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.029 0.971 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.159 2.056 7.436 15.254 hybrid contribution 1.071 -0.017 -1.492 1.836 sum -12.088 2.039 5.945 13.624 Atomic orbital electron populations 1.21612 0.94929 1.00559 1.01792 1.22356 0.96402 0.97703 1.01296 1.19628 0.91719 0.92437 0.88113 0.96146 1.22028 0.92812 1.40384 1.01738 0.92997 1.25740 0.95520 0.95999 1.00814 1.70067 1.10449 1.49139 1.29236 0.85993 0.79696 0.79651 0.78218 1.19204 1.23058 1.17261 1.59722 1.45383 1.12420 1.07256 1.21731 0.97389 0.88215 0.98965 1.21962 0.98333 1.02228 0.95360 1.23122 0.87462 0.94769 0.96310 1.87444 1.39571 1.18681 1.87825 1.22596 1.01541 0.80447 0.95228 1.20913 0.92868 0.96793 0.92406 0.98113 1.22321 1.01264 0.94829 1.02195 0.91300 0.94427 0.92796 0.95482 0.89557 0.92884 0.97054 0.91538 0.90196 0.88379 0.91082 0.89362 0.91078 0.88987 0.91258 0.93230 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.73 71.98 0.70 -3.55 16 2 C -0.14 -5.66 4.64 30.59 0.14 -5.52 16 3 C 0.19 8.52 1.28 44.17 0.06 8.58 16 4 H 0.02 0.98 5.93 -2.39 -0.01 0.96 16 5 C -0.53 -29.29 6.57 25.60 0.17 -29.12 16 6 H 0.05 3.22 5.21 -2.91 -0.02 3.21 16 7 C 0.02 0.96 5.45 84.65 0.46 1.43 16 8 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 9 Si 0.94 44.95 24.68 68.60 1.69 46.65 16 10 H -0.27 -12.22 6.86 99.48 0.68 -11.53 16 11 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 12 H -0.25 -11.15 6.39 99.48 0.64 -10.52 16 13 N -0.52 -20.38 3.34 -864.81 -2.89 -23.27 16 14 C 0.06 2.29 5.32 85.48 0.45 2.75 16 15 C -0.14 -3.60 5.41 30.12 0.16 -3.44 16 16 C 0.06 1.49 6.72 72.19 0.48 1.97 16 17 O -0.42 -13.87 10.12 -145.55 -1.47 -15.34 16 18 C 0.08 2.52 5.78 72.41 0.42 2.94 16 19 C 0.08 3.22 1.72 46.52 0.08 3.30 16 20 H 0.00 0.06 5.91 -2.39 -0.01 0.04 16 21 C -0.15 -5.71 7.08 71.98 0.51 -5.20 16 22 H 0.07 2.08 7.88 -2.38 -0.02 2.06 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.03 1.17 3.98 -2.39 -0.01 1.16 16 26 H 0.09 3.42 3.85 -2.39 -0.01 3.41 16 27 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.01 0.46 7.64 -2.39 -0.02 0.44 16 29 H 0.07 2.32 7.35 -2.39 -0.02 2.30 16 30 H 0.08 2.00 7.39 -2.39 -0.02 1.98 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.98 7.11 -2.39 -0.02 1.96 16 35 H 0.09 2.67 7.89 -2.38 -0.02 2.65 16 36 H 0.07 3.22 4.34 -2.39 -0.01 3.21 16 37 H 0.05 1.71 7.95 -2.38 -0.02 1.69 16 38 H 0.07 2.40 6.86 -2.39 -0.02 2.39 16 Total: -1.00 -64.78 270.46 2.21 -62.57 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.94 Total: 14.23 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 3.64 Total: -25.87 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -2.59 Total: -82.24 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.47 Total: -15.34 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.69 Total: 46.65 kcal Total: -64.78 2.21 -62.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306833295.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.334 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds