Wall clock time and date at job start Mon Mar 30 2020 03:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47425 * 2 1 4 4 H 1.08996 * 109.47129 * 57.19386 * 3 2 1 5 5 C 1.50696 * 109.46978 * 177.19503 * 3 2 1 6 6 H 1.07997 * 119.99944 * 114.55424 * 5 3 2 7 7 C 1.37877 * 120.00064 * 294.54957 * 5 3 2 8 8 N 1.31509 * 119.99858 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99834 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47008 * 89.99785 * 9 7 5 11 11 H 1.48500 * 109.47042 * 209.99773 * 9 7 5 12 12 H 1.48496 * 109.47116 * 329.99734 * 9 7 5 13 13 N 1.46898 * 109.46686 * 297.19598 * 3 2 1 14 14 C 1.40461 * 111.00310 * 316.77938 * 13 3 2 15 15 C 1.54385 * 111.45109 * 187.82798 * 14 13 3 16 16 C 1.50719 * 109.13654 * 284.56884 * 15 14 13 17 17 O 1.44229 * 112.85054 * 91.52728 * 16 15 14 18 18 C 1.43936 * 116.11380 * 318.69176 * 17 16 15 19 19 C 1.47605 * 111.00289 * 85.23321 * 13 3 2 20 20 H 1.08994 * 109.63895 * 272.67566 * 19 13 3 21 21 C 1.53002 * 109.63492 * 33.29223 * 19 13 3 22 22 H 1.08993 * 109.47454 * 67.66753 * 1 2 3 23 23 H 1.09001 * 109.47289 * 187.67603 * 1 2 3 24 24 H 1.09006 * 109.46663 * 307.66660 * 1 2 3 25 25 H 1.09004 * 109.47257 * 120.00313 * 2 1 3 26 26 H 1.09001 * 109.47015 * 239.99791 * 2 1 3 27 27 H 0.97006 * 119.99868 * 180.02562 * 8 7 5 28 28 H 1.08998 * 109.08242 * 308.33663 * 14 13 3 29 29 H 1.08997 * 109.08474 * 67.32244 * 14 13 3 30 30 H 1.09002 * 109.52770 * 44.46640 * 15 14 13 31 31 H 1.09006 * 109.53030 * 164.59985 * 15 14 13 32 32 H 1.09004 * 108.81262 * 212.39361 * 16 15 14 33 33 H 1.08999 * 108.80588 * 330.65724 * 16 15 14 34 34 H 1.08999 * 108.99776 * 79.86028 * 18 17 16 35 35 H 1.08999 * 109.00179 * 198.70567 * 18 17 16 36 36 H 1.09004 * 109.47520 * 52.33313 * 21 19 13 37 37 H 1.09008 * 109.46827 * 172.32892 * 21 19 13 38 38 H 1.08993 * 109.47289 * 292.32872 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6362 1.9706 0.8637 5 6 3.5454 1.4429 0.0695 6 1 4.1242 1.8178 -0.7616 7 6 4.1837 0.9648 1.1942 8 7 3.4789 0.5079 2.2061 9 14 6.0498 0.9661 1.2806 10 1 6.5174 2.2491 1.8640 11 1 6.5066 -0.1609 2.1330 12 1 6.6087 0.8109 -0.0863 13 7 1.6065 2.1150 -1.2319 14 6 1.7733 1.2784 -2.3477 15 6 1.5064 2.0358 -3.6663 16 6 0.0205 2.2229 -3.8365 17 8 -0.4548 3.4658 -3.2804 18 6 0.1057 3.8473 -2.0107 19 6 0.2463 2.6685 -1.0819 20 1 -0.4895 1.9075 -1.3416 21 6 0.0331 3.1241 0.3631 22 1 -0.3634 0.3905 -0.9505 23 1 -0.3634 -1.0185 0.1373 24 1 -0.3633 0.6280 0.8135 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.9280 0.1719 2.9976 28 1 2.7939 0.8958 -2.3568 29 1 1.0805 0.4404 -2.2716 30 1 1.9947 3.0097 -3.6323 31 1 1.9004 1.4598 -4.5036 32 1 -0.2170 2.2002 -4.9001 33 1 -0.4960 1.3980 -3.3457 34 1 1.0886 4.2889 -2.1751 35 1 -0.5430 4.5892 -1.5449 36 1 0.8454 3.7884 0.6583 37 1 -0.9162 3.6542 0.4406 38 1 0.0182 2.2543 1.0198 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306833297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:32 Heat of formation + Delta-G solvation = -27.787194 kcal Electronic energy + Delta-G solvation = -17628.830153 eV Core-core repulsion = 15086.056003 eV Total energy + Delta-G solvation = -2542.774150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78927 -36.61869 -33.06966 -32.97368 -31.19822 -29.36014 -27.20698 -25.82752 -24.23402 -23.00212 -21.13099 -19.76385 -18.65602 -16.78059 -15.99429 -15.85883 -15.02323 -14.77315 -14.50428 -13.95979 -13.19206 -13.02432 -12.54785 -12.31698 -12.02740 -11.76813 -11.54016 -11.31961 -11.07933 -10.89615 -10.87031 -10.73974 -10.63575 -10.43414 -10.08736 -9.93428 -9.71294 -9.40134 -9.02083 -8.83601 -8.28492 -6.99601 -6.00847 -4.02282 3.31214 3.37897 3.41262 4.17322 4.41454 4.86942 5.22390 5.30964 5.31571 5.46946 5.58582 5.66361 5.71003 5.97280 6.06549 6.10587 6.12425 6.15876 6.26173 6.32389 6.35226 6.39158 6.59951 6.69104 6.72683 6.74059 6.89766 7.05319 7.23061 7.44999 7.59193 7.71197 7.86697 8.26213 8.50653 8.64739 9.04441 9.61912 11.06955 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032705 B = 0.009261 C = 0.008622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.929795 B = 3022.842704 C = 3246.595532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.147 4.147 3 C 0.207 3.793 4 H 0.062 0.938 5 C -0.496 4.496 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.541 5.541 14 C 0.077 3.923 15 C -0.159 4.159 16 C 0.065 3.935 17 O -0.403 6.403 18 C 0.067 3.933 19 C 0.050 3.950 20 H 0.052 0.948 21 C -0.151 4.151 22 H 0.042 0.958 23 H 0.032 0.968 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.259 0.741 28 H 0.080 0.920 29 H 0.019 0.981 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 2.055 -6.762 9.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C 0.102 3.898 4 H 0.079 0.921 5 C -0.535 4.535 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.265 5.265 14 C -0.053 4.053 15 C -0.197 4.197 16 C -0.011 4.011 17 O -0.323 6.323 18 C -0.010 4.010 19 C -0.058 4.058 20 H 0.069 0.931 21 C -0.208 4.208 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.036 0.964 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.948 2.458 -6.753 9.328 hybrid contribution 0.757 -0.999 0.364 1.305 sum -5.191 1.459 -6.388 8.360 Atomic orbital electron populations 1.22247 0.99569 0.99572 1.00262 1.22195 0.91651 1.02520 1.02313 1.19609 0.95128 0.88334 0.86701 0.92055 1.21151 0.90882 1.39898 1.01542 0.92220 1.24914 0.98085 0.95588 0.95688 1.69907 1.34963 1.42650 1.05947 0.86574 0.85940 0.77454 0.77861 1.20787 1.21476 1.20043 1.59542 1.20433 1.41152 1.05397 1.21050 1.01737 0.93265 0.89280 1.22177 0.96100 1.02584 0.98883 1.22288 0.94572 0.86600 0.97637 1.88172 1.67369 1.40281 1.36448 1.22586 0.98998 0.96445 0.82936 1.21967 0.91638 0.96346 0.95832 0.93090 1.22108 1.00616 1.02373 0.95660 0.93894 0.94931 0.93049 0.89484 0.94302 0.93080 0.90190 0.96367 0.90308 0.91082 0.90526 0.93902 0.91933 0.90092 0.91353 0.93498 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.36 37.16 0.31 -2.77 16 2 C -0.15 -3.35 4.74 -26.73 -0.13 -3.47 16 3 C 0.21 4.90 1.59 -68.87 -0.11 4.79 16 4 H 0.06 1.56 4.75 -51.93 -0.25 1.31 16 5 C -0.50 -13.18 7.98 -34.44 -0.27 -13.45 16 6 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 7 C 0.06 1.57 5.31 -17.82 -0.09 1.47 16 8 N -0.90 -24.88 11.72 55.43 0.65 -24.23 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.54 -11.05 3.84 -225.03 -0.86 -11.92 16 14 C 0.08 1.45 3.72 -6.44 -0.02 1.42 16 15 C -0.16 -2.51 5.67 -27.15 -0.15 -2.66 16 16 C 0.07 0.99 6.26 36.01 0.23 1.21 16 17 O -0.40 -6.80 10.92 -35.23 -0.38 -7.18 16 18 C 0.07 1.11 5.91 36.02 0.21 1.32 16 19 C 0.05 0.90 1.50 -68.46 -0.10 0.80 16 20 H 0.05 0.94 4.24 -51.93 -0.22 0.72 16 21 C -0.15 -2.62 7.52 37.16 0.28 -2.34 16 22 H 0.04 0.79 4.18 -51.93 -0.22 0.57 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.98 5.79 -51.93 -0.30 0.68 16 25 H 0.09 2.24 6.46 -51.93 -0.34 1.91 16 26 H 0.04 0.88 6.32 -51.93 -0.33 0.55 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.08 1.66 7.12 -51.93 -0.37 1.29 16 29 H 0.02 0.35 4.77 -51.93 -0.25 0.10 16 30 H 0.08 1.32 7.25 -51.93 -0.38 0.95 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.66 6.61 -51.93 -0.34 0.32 16 34 H 0.06 1.10 7.26 -51.93 -0.38 0.72 16 35 H 0.08 1.20 7.59 -51.93 -0.39 0.80 16 36 H 0.07 1.27 7.89 -51.93 -0.41 0.86 16 37 H 0.05 0.68 7.93 -51.92 -0.41 0.27 16 38 H 0.07 1.41 4.13 -51.93 -0.21 1.20 16 LS Contribution 268.51 15.07 4.05 4.05 Total: -1.00 -27.25 268.51 -7.03 -34.27 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.59 Total: 2.56 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 0.14 Total: -13.68 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.21 Total: -36.14 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.38 Total: -7.18 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.25 -7.03 -34.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306833297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.484 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds