Wall clock time and date at job start Mon Mar 30 2020 03:49:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47129 * 2 1
4 4 H 1.09000 * 109.46887 * 305.00322 * 3 2 1
5 5 C 1.50700 * 109.47001 * 185.00053 * 3 2 1
6 6 H 1.08005 * 119.99657 * 245.30414 * 5 3 2
7 7 C 1.37870 * 119.99988 * 65.30475 * 5 3 2
8 8 N 1.31509 * 120.00150 * 0.02562 * 7 5 3
9 9 Si 1.86806 * 120.00066 * 179.97438 * 7 5 3
10 10 H 1.48500 * 109.46961 * 89.99838 * 9 7 5
11 11 H 1.48496 * 109.47013 * 210.00318 * 9 7 5
12 12 H 1.48503 * 109.46886 * 330.00048 * 9 7 5
13 13 N 1.46900 * 109.47185 * 65.00064 * 3 2 1
14 14 C 1.48559 * 111.00057 * 65.58300 * 13 3 2
15 15 C 1.54380 * 104.59641 * 159.04082 * 14 13 3
16 16 H 1.08997 * 110.40850 * 95.08660 * 15 14 13
17 17 O 1.42898 * 110.32408 * 217.25457 * 15 14 13
18 18 C 1.54265 * 105.06048 * 336.15201 * 15 14 13
19 19 C 1.52999 * 110.32363 * 118.89310 * 18 15 14
20 20 C 1.53001 * 110.32299 * 241.10523 * 18 15 14
21 21 C 1.48556 * 111.00078 * 181.00612 * 13 3 2
22 22 H 1.08996 * 109.47426 * 299.99608 * 1 2 3
23 23 H 1.08996 * 109.47488 * 60.00149 * 1 2 3
24 24 H 1.09002 * 109.46968 * 179.97438 * 1 2 3
25 25 H 1.08998 * 109.46808 * 239.99975 * 2 1 3
26 26 H 1.08996 * 109.46923 * 120.00363 * 2 1 3
27 27 H 0.97007 * 120.00121 * 180.02562 * 8 7 5
28 28 H 1.08998 * 110.41184 * 40.26320 * 14 13 3
29 29 H 1.08997 * 110.41523 * 277.82424 * 14 13 3
30 30 H 0.96700 * 113.99822 * 295.63505 * 17 15 14
31 31 H 1.08999 * 109.47232 * 60.00293 * 19 18 15
32 32 H 1.09001 * 109.46890 * 180.02562 * 19 18 15
33 33 H 1.08999 * 109.47018 * 299.99984 * 19 18 15
34 34 H 1.08999 * 109.47154 * 59.99283 * 20 18 15
35 35 H 1.08999 * 109.46876 * 180.02562 * 20 18 15
36 36 H 1.09001 * 109.46808 * 299.99767 * 20 18 15
37 37 H 1.08999 * 110.41460 * 82.18116 * 21 13 3
38 38 H 1.08998 * 110.51268 * 319.78858 * 21 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9815 -0.8418
5 6 3.5419 1.4442 -0.1238
6 1 4.1504 1.8108 0.6897
7 6 4.1392 0.9779 -1.2757
8 7 3.3982 0.5321 -2.2665
9 14 6.0009 0.9808 -1.4295
10 1 6.5412 -0.3068 -0.9242
11 1 6.3795 1.1512 -2.8552
12 1 6.5618 2.1003 -0.6312
13 7 1.6514 2.0992 1.2552
14 6 2.3333 1.4731 2.4171
15 6 2.2771 2.5459 3.5257
16 1 1.4173 2.3776 4.1742
17 8 3.4843 2.5334 4.2902
18 6 2.1299 3.8873 2.7784
19 6 0.8205 4.5740 3.1719
20 6 3.3212 4.7982 3.0819
21 6 2.1097 3.5121 1.2809
22 1 -0.3634 0.5137 0.8900
23 1 -0.3634 0.5138 -0.8899
24 1 -0.3633 -1.0277 -0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8899
27 1 3.8185 0.2036 -3.0767
28 1 3.3681 1.2371 2.1686
29 1 1.8023 0.5743 2.7305
30 1 3.6300 1.7137 4.7819
31 1 0.8176 4.7629 4.2454
32 1 0.7306 5.5190 2.6361
33 1 -0.0196 3.9292 2.9141
34 1 4.2420 4.3113 2.7608
35 1 3.2029 5.7411 2.5478
36 1 3.3670 4.9914 4.1536
37 1 1.4103 4.1486 0.7390
38 1 3.1090 3.5973 0.8541
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307027874.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:49:35
Heat of formation + Delta-G solvation = -78.186943 kcal
Electronic energy + Delta-G solvation = -17277.216013 eV
Core-core repulsion = 14732.256366 eV
Total energy + Delta-G solvation = -2544.959647 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.75769 -37.49684 -35.81306 -34.07243 -32.71492 -29.63699 -28.19988 -28.05195
-26.12831 -24.40516 -22.96720 -20.95452 -19.68675 -18.67421 -17.91278 -17.06465
-16.26537 -15.51506 -15.32633 -15.13783 -14.87766 -14.55950 -13.95604 -13.85561
-13.43057 -13.24955 -13.07794 -12.93237 -12.90708 -12.69595 -12.46505 -12.35078
-11.99176 -11.82526 -11.74791 -11.52643 -11.36760 -11.07418 -10.96344 -10.69963
-10.46506 -9.06442 -8.08315 -6.26799 1.33620 1.35994 1.44744 2.37762
3.13441 3.24652 3.68716 3.72066 3.96630 4.12577 4.45985 4.50143
4.54057 4.61144 4.70568 4.84357 4.88056 4.90574 4.97012 5.02776
5.10506 5.18943 5.19584 5.21654 5.34674 5.39297 5.42532 5.44564
5.57300 5.63238 5.75363 5.96430 6.14786 6.30819 6.45932 6.93671
6.97607 7.42645 8.90294
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.023858 B = 0.010592 C = 0.008632
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1173.313295 B = 2642.909797 C = 3242.871021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.098 4.098
3 C 0.208 3.792
4 H 0.005 0.995
5 C -0.547 4.547
6 H 0.051 0.949
7 C 0.022 3.978
8 N -0.912 5.912
9 Si 0.942 3.058
10 H -0.276 1.276
11 H -0.283 1.283
12 H -0.275 1.275
13 N -0.500 5.500
14 C 0.005 3.995
15 C 0.113 3.887
16 H 0.080 0.920
17 O -0.572 6.572
18 C -0.064 4.064
19 C -0.124 4.124
20 C -0.114 4.114
21 C 0.045 3.955
22 H 0.059 0.941
23 H 0.032 0.968
24 H 0.048 0.952
25 H 0.050 0.950
26 H 0.033 0.967
27 H 0.261 0.739
28 H 0.040 0.960
29 H 0.073 0.927
30 H 0.388 0.612
31 H 0.068 0.932
32 H 0.063 0.937
33 H 0.058 0.942
34 H 0.031 0.969
35 H 0.056 0.944
36 H 0.065 0.935
37 H 0.066 0.934
38 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.540 4.014 11.221 12.432
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.137 4.137
3 C 0.101 3.899
4 H 0.023 0.977
5 C -0.586 4.586
6 H 0.069 0.931
7 C -0.178 4.178
8 N -0.551 5.551
9 Si 0.769 3.231
10 H -0.201 1.201
11 H -0.208 1.208
12 H -0.200 1.200
13 N -0.224 5.224
14 C -0.124 4.124
15 C 0.054 3.946
16 H 0.098 0.902
17 O -0.379 6.379
18 C -0.064 4.064
19 C -0.181 4.181
20 C -0.171 4.171
21 C -0.084 4.084
22 H 0.078 0.922
23 H 0.051 0.949
24 H 0.067 0.933
25 H 0.069 0.931
26 H 0.052 0.948
27 H 0.071 0.929
28 H 0.058 0.942
29 H 0.091 0.909
30 H 0.237 0.763
31 H 0.086 0.914
32 H 0.082 0.918
33 H 0.077 0.923
34 H 0.050 0.950
35 H 0.075 0.925
36 H 0.084 0.916
37 H 0.085 0.915
38 H 0.045 0.955
Dipole moment (debyes) X Y Z Total
from point charges -4.063 4.486 10.808 12.387
hybrid contribution 2.050 -0.827 -0.705 2.320
sum -2.014 3.660 10.103 10.932
Atomic orbital electron populations
1.21580 0.96008 0.99988 1.00832 1.21333 0.94746 0.97888 0.99692
1.19161 0.91963 0.91697 0.87117 0.97692 1.21915 0.93950 1.41799
1.00942 0.93130 1.25583 1.01576 0.95023 0.95618 1.70029 1.36246
1.42801 1.05994 0.85798 0.81768 0.78370 0.77176 1.20137 1.20807
1.20034 1.65640 1.51517 1.01838 1.03366 1.23720 0.98264 0.98005
0.92370 1.22587 0.86818 0.94153 0.91035 0.90223 1.86508 1.42674
1.43323 1.65386 1.21368 0.97449 0.94403 0.93223 1.21738 0.94735
1.00062 1.01537 1.21451 0.96174 0.97911 1.01607 1.23088 0.98403
0.91210 0.95686 0.92179 0.94882 0.93341 0.93150 0.94845 0.92944
0.94183 0.90862 0.76262 0.91352 0.91818 0.92298 0.94953 0.92500
0.91552 0.91526 0.95488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.01 9.80 71.98 0.71 -4.31 16
2 C -0.10 -4.65 5.23 30.59 0.16 -4.49 16
3 C 0.21 10.47 1.72 44.17 0.08 10.55 16
4 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16
5 C -0.55 -29.85 6.46 25.60 0.17 -29.69 16
6 H 0.05 2.82 5.67 -2.91 -0.02 2.80 16
7 C 0.02 1.22 5.30 84.65 0.45 1.67 16
8 N -0.91 -52.66 11.71 21.44 0.25 -52.41 16
9 Si 0.94 44.31 29.54 68.60 2.03 46.33 16
10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16
12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16
13 N -0.50 -20.99 4.85 -860.74 -4.17 -25.16 16
14 C 0.01 0.20 5.08 86.45 0.44 0.64 16
15 C 0.11 3.46 4.05 31.49 0.13 3.59 16
16 H 0.08 2.09 7.71 -2.39 -0.02 2.07 16
17 O -0.57 -16.50 11.55 -148.98 -1.72 -18.22 16
18 C -0.06 -2.00 1.03 -51.28 -0.05 -2.05 16
19 C -0.12 -3.08 8.23 71.98 0.59 -2.49 16
20 C -0.11 -3.44 7.49 71.98 0.54 -2.90 16
21 C 0.04 1.77 5.39 86.45 0.47 2.24 16
22 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16
23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16
24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
25 H 0.05 2.70 6.41 -2.39 -0.02 2.69 16
26 H 0.03 1.53 6.87 -2.39 -0.02 1.51 16
27 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16
28 H 0.04 1.77 5.65 -2.39 -0.01 1.76 16
29 H 0.07 2.59 7.59 -2.39 -0.02 2.57 16
30 H 0.39 7.90 9.12 -74.06 -0.68 7.23 16
31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
34 H 0.03 1.13 7.85 -2.39 -0.02 1.11 16
35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16
36 H 0.07 1.81 7.90 -2.39 -0.02 1.79 16
37 H 0.07 2.55 7.86 -2.39 -0.02 2.54 16
38 H 0.03 1.25 6.11 -2.39 -0.01 1.23 16
Total: -1.00 -61.20 290.54 0.40 -60.80
By element:
Atomic # 1 Polarization: 15.54 SS G_CDS: 0.35 Total: 15.89 kcal
Atomic # 6 Polarization: -30.90 SS G_CDS: 3.67 Total: -27.23 kcal
Atomic # 7 Polarization: -73.65 SS G_CDS: -3.92 Total: -77.57 kcal
Atomic # 8 Polarization: -16.50 SS G_CDS: -1.72 Total: -18.22 kcal
Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal
Total: -61.20 0.40 -60.80 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307027874.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.387 kcal
(2) G-P(sol) polarization free energy of solvation -61.203 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.591 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.800 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.187 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds