Wall clock time and date at job start Mon Mar 30 2020 03:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47129 * 2 1 4 4 H 1.09000 * 109.46887 * 305.00322 * 3 2 1 5 5 C 1.50700 * 109.47001 * 185.00053 * 3 2 1 6 6 H 1.08005 * 119.99657 * 245.30414 * 5 3 2 7 7 C 1.37870 * 119.99988 * 65.30475 * 5 3 2 8 8 N 1.31509 * 120.00150 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00066 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46961 * 89.99838 * 9 7 5 11 11 H 1.48496 * 109.47013 * 210.00318 * 9 7 5 12 12 H 1.48503 * 109.46886 * 330.00048 * 9 7 5 13 13 N 1.46900 * 109.47185 * 65.00064 * 3 2 1 14 14 C 1.48559 * 111.00057 * 65.58300 * 13 3 2 15 15 C 1.54380 * 104.59641 * 159.04082 * 14 13 3 16 16 H 1.08997 * 110.40850 * 95.08660 * 15 14 13 17 17 O 1.42898 * 110.32408 * 217.25457 * 15 14 13 18 18 C 1.54265 * 105.06048 * 336.15201 * 15 14 13 19 19 C 1.52999 * 110.32363 * 118.89310 * 18 15 14 20 20 C 1.53001 * 110.32299 * 241.10523 * 18 15 14 21 21 C 1.48556 * 111.00078 * 181.00612 * 13 3 2 22 22 H 1.08996 * 109.47426 * 299.99608 * 1 2 3 23 23 H 1.08996 * 109.47488 * 60.00149 * 1 2 3 24 24 H 1.09002 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46808 * 239.99975 * 2 1 3 26 26 H 1.08996 * 109.46923 * 120.00363 * 2 1 3 27 27 H 0.97007 * 120.00121 * 180.02562 * 8 7 5 28 28 H 1.08998 * 110.41184 * 40.26320 * 14 13 3 29 29 H 1.08997 * 110.41523 * 277.82424 * 14 13 3 30 30 H 0.96700 * 113.99822 * 295.63505 * 17 15 14 31 31 H 1.08999 * 109.47232 * 60.00293 * 19 18 15 32 32 H 1.09001 * 109.46890 * 180.02562 * 19 18 15 33 33 H 1.08999 * 109.47018 * 299.99984 * 19 18 15 34 34 H 1.08999 * 109.47154 * 59.99283 * 20 18 15 35 35 H 1.08999 * 109.46876 * 180.02562 * 20 18 15 36 36 H 1.09001 * 109.46808 * 299.99767 * 20 18 15 37 37 H 1.08999 * 110.41460 * 82.18116 * 21 13 3 38 38 H 1.08998 * 110.51268 * 319.78858 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1504 1.8108 0.6897 7 6 4.1392 0.9779 -1.2757 8 7 3.3982 0.5321 -2.2665 9 14 6.0009 0.9808 -1.4295 10 1 6.5412 -0.3068 -0.9242 11 1 6.3795 1.1512 -2.8552 12 1 6.5618 2.1003 -0.6312 13 7 1.6514 2.0992 1.2552 14 6 2.3333 1.4731 2.4171 15 6 2.2771 2.5459 3.5257 16 1 1.4173 2.3776 4.1742 17 8 3.4843 2.5334 4.2902 18 6 2.1299 3.8873 2.7784 19 6 0.8205 4.5740 3.1719 20 6 3.3212 4.7982 3.0819 21 6 2.1097 3.5121 1.2809 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8185 0.2036 -3.0767 28 1 3.3681 1.2371 2.1686 29 1 1.8023 0.5743 2.7305 30 1 3.6300 1.7137 4.7819 31 1 0.8176 4.7629 4.2454 32 1 0.7306 5.5190 2.6361 33 1 -0.0196 3.9292 2.9141 34 1 4.2420 4.3113 2.7608 35 1 3.2029 5.7411 2.5478 36 1 3.3670 4.9914 4.1536 37 1 1.4103 4.1486 0.7390 38 1 3.1090 3.5973 0.8541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:35 Heat of formation + Delta-G solvation = -78.186943 kcal Electronic energy + Delta-G solvation = -17277.216013 eV Core-core repulsion = 14732.256366 eV Total energy + Delta-G solvation = -2544.959647 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75769 -37.49684 -35.81306 -34.07243 -32.71492 -29.63699 -28.19988 -28.05195 -26.12831 -24.40516 -22.96720 -20.95452 -19.68675 -18.67421 -17.91278 -17.06465 -16.26537 -15.51506 -15.32633 -15.13783 -14.87766 -14.55950 -13.95604 -13.85561 -13.43057 -13.24955 -13.07794 -12.93237 -12.90708 -12.69595 -12.46505 -12.35078 -11.99176 -11.82526 -11.74791 -11.52643 -11.36760 -11.07418 -10.96344 -10.69963 -10.46506 -9.06442 -8.08315 -6.26799 1.33620 1.35994 1.44744 2.37762 3.13441 3.24652 3.68716 3.72066 3.96630 4.12577 4.45985 4.50143 4.54057 4.61144 4.70568 4.84357 4.88056 4.90574 4.97012 5.02776 5.10506 5.18943 5.19584 5.21654 5.34674 5.39297 5.42532 5.44564 5.57300 5.63238 5.75363 5.96430 6.14786 6.30819 6.45932 6.93671 6.97607 7.42645 8.90294 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.010592 C = 0.008632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.313295 B = 2642.909797 C = 3242.871021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 C 0.208 3.792 4 H 0.005 0.995 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.500 5.500 14 C 0.005 3.995 15 C 0.113 3.887 16 H 0.080 0.920 17 O -0.572 6.572 18 C -0.064 4.064 19 C -0.124 4.124 20 C -0.114 4.114 21 C 0.045 3.955 22 H 0.059 0.941 23 H 0.032 0.968 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.388 0.612 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 4.014 11.221 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 C 0.101 3.899 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.200 1.200 13 N -0.224 5.224 14 C -0.124 4.124 15 C 0.054 3.946 16 H 0.098 0.902 17 O -0.379 6.379 18 C -0.064 4.064 19 C -0.181 4.181 20 C -0.171 4.171 21 C -0.084 4.084 22 H 0.078 0.922 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.063 4.486 10.808 12.387 hybrid contribution 2.050 -0.827 -0.705 2.320 sum -2.014 3.660 10.103 10.932 Atomic orbital electron populations 1.21580 0.96008 0.99988 1.00832 1.21333 0.94746 0.97888 0.99692 1.19161 0.91963 0.91697 0.87117 0.97692 1.21915 0.93950 1.41799 1.00942 0.93130 1.25583 1.01576 0.95023 0.95618 1.70029 1.36246 1.42801 1.05994 0.85798 0.81768 0.78370 0.77176 1.20137 1.20807 1.20034 1.65640 1.51517 1.01838 1.03366 1.23720 0.98264 0.98005 0.92370 1.22587 0.86818 0.94153 0.91035 0.90223 1.86508 1.42674 1.43323 1.65386 1.21368 0.97449 0.94403 0.93223 1.21738 0.94735 1.00062 1.01537 1.21451 0.96174 0.97911 1.01607 1.23088 0.98403 0.91210 0.95686 0.92179 0.94882 0.93341 0.93150 0.94845 0.92944 0.94183 0.90862 0.76262 0.91352 0.91818 0.92298 0.94953 0.92500 0.91552 0.91526 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.80 71.98 0.71 -4.31 16 2 C -0.10 -4.65 5.23 30.59 0.16 -4.49 16 3 C 0.21 10.47 1.72 44.17 0.08 10.55 16 4 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 5 C -0.55 -29.85 6.46 25.60 0.17 -29.69 16 6 H 0.05 2.82 5.67 -2.91 -0.02 2.80 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -52.66 11.71 21.44 0.25 -52.41 16 9 Si 0.94 44.31 29.54 68.60 2.03 46.33 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 N -0.50 -20.99 4.85 -860.74 -4.17 -25.16 16 14 C 0.01 0.20 5.08 86.45 0.44 0.64 16 15 C 0.11 3.46 4.05 31.49 0.13 3.59 16 16 H 0.08 2.09 7.71 -2.39 -0.02 2.07 16 17 O -0.57 -16.50 11.55 -148.98 -1.72 -18.22 16 18 C -0.06 -2.00 1.03 -51.28 -0.05 -2.05 16 19 C -0.12 -3.08 8.23 71.98 0.59 -2.49 16 20 C -0.11 -3.44 7.49 71.98 0.54 -2.90 16 21 C 0.04 1.77 5.39 86.45 0.47 2.24 16 22 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 2.70 6.41 -2.39 -0.02 2.69 16 26 H 0.03 1.53 6.87 -2.39 -0.02 1.51 16 27 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 28 H 0.04 1.77 5.65 -2.39 -0.01 1.76 16 29 H 0.07 2.59 7.59 -2.39 -0.02 2.57 16 30 H 0.39 7.90 9.12 -74.06 -0.68 7.23 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.13 7.85 -2.39 -0.02 1.11 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.81 7.90 -2.39 -0.02 1.79 16 37 H 0.07 2.55 7.86 -2.39 -0.02 2.54 16 38 H 0.03 1.25 6.11 -2.39 -0.01 1.23 16 Total: -1.00 -61.20 290.54 0.40 -60.80 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.35 Total: 15.89 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.67 Total: -27.23 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -3.92 Total: -77.57 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -1.72 Total: -18.22 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.20 0.40 -60.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.387 kcal (2) G-P(sol) polarization free energy of solvation -61.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds