Wall clock time and date at job start Mon Mar 30 2020 03:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47541 * 2 1 4 4 H 1.08997 * 109.47300 * 181.17894 * 3 2 1 5 5 C 1.50697 * 109.47207 * 301.18310 * 3 2 1 6 6 H 1.08004 * 120.00177 * 119.99211 * 5 3 2 7 7 C 1.37878 * 119.99638 * 299.99812 * 5 3 2 8 8 N 1.31515 * 120.00111 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99895 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46969 * 269.99619 * 9 7 5 11 11 H 1.48492 * 109.47088 * 29.99403 * 9 7 5 12 12 H 1.48493 * 109.47197 * 150.00012 * 9 7 5 13 13 N 1.46900 * 109.46781 * 61.17940 * 3 2 1 14 14 C 1.48562 * 111.00338 * 63.70799 * 13 3 2 15 15 C 1.54377 * 104.59444 * 159.03905 * 14 13 3 16 16 H 1.09006 * 110.32080 * 217.24931 * 15 14 13 17 17 O 1.42901 * 110.32373 * 95.05128 * 15 14 13 18 18 C 1.54253 * 105.06314 * 336.14708 * 15 14 13 19 19 C 1.53004 * 110.32359 * 118.89678 * 18 15 14 20 20 C 1.53003 * 110.32836 * 241.00243 * 18 15 14 21 21 C 1.48568 * 111.00208 * 179.12859 * 13 3 2 22 22 H 1.09000 * 109.46721 * 65.43072 * 1 2 3 23 23 H 1.08993 * 109.47271 * 185.43482 * 1 2 3 24 24 H 1.08999 * 109.46811 * 305.43207 * 1 2 3 25 25 H 1.08998 * 109.47293 * 239.99633 * 2 1 3 26 26 H 1.09006 * 109.47286 * 120.00133 * 2 1 3 27 27 H 0.97002 * 119.99911 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.41593 * 277.82083 * 14 13 3 29 29 H 1.08999 * 110.40933 * 40.14305 * 14 13 3 30 30 H 0.96695 * 114.00311 * 61.44443 * 17 15 14 31 31 H 1.08999 * 109.47200 * 59.99884 * 19 18 15 32 32 H 1.08998 * 109.47374 * 180.02562 * 19 18 15 33 33 H 1.09000 * 109.47180 * 300.00386 * 19 18 15 34 34 H 1.08999 * 109.46941 * 59.99844 * 20 18 15 35 35 H 1.09001 * 109.47271 * 179.97438 * 20 18 15 36 36 H 1.09003 * 109.46794 * 300.00223 * 20 18 15 37 37 H 1.09003 * 110.40666 * 319.73980 * 21 13 3 38 38 H 1.09004 * 110.40981 * 82.17580 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4425 -0.0211 5 6 1.5140 2.1613 -1.2155 6 1 0.8952 3.0387 -1.0983 7 6 1.8227 1.6989 -2.4772 8 7 2.5766 0.6308 -2.6199 9 14 1.1712 2.5904 -3.9840 10 1 -0.1448 2.0186 -4.3669 11 1 1.0126 4.0341 -3.6749 12 1 2.1277 2.4269 -5.1080 13 7 1.5739 2.1266 1.2135 14 6 2.1458 1.4983 2.4321 15 6 2.0338 2.5874 3.5205 16 1 2.9060 2.5609 4.1737 17 8 0.8374 2.4078 4.2810 18 6 1.9828 3.9218 2.7484 19 6 0.6666 4.6492 3.0307 20 6 3.1706 4.8053 3.1352 21 6 2.0683 3.5269 1.2585 22 1 -0.3633 0.4273 -0.9346 23 1 -0.3633 -1.0230 0.0973 24 1 -0.3633 0.5958 0.8373 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.7940 0.3056 -3.5076 28 1 1.5671 0.6186 2.7136 29 1 3.1890 1.2291 2.2671 30 1 0.7937 1.5647 4.7524 31 1 0.5857 4.8527 4.0985 32 1 0.6451 5.5888 2.4787 33 1 -0.1688 4.0239 2.7158 34 1 4.1004 4.2901 2.8939 35 1 3.1212 5.7432 2.5820 36 1 3.1367 5.0118 4.2050 37 1 3.1000 3.5771 0.9105 38 1 1.4311 4.1746 0.6563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307027876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:37 Heat of formation + Delta-G solvation = -55.725970 kcal Electronic energy + Delta-G solvation = -17213.538235 eV Core-core repulsion = 14669.552569 eV Total energy + Delta-G solvation = -2543.985666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.30281 -35.87559 -34.44836 -32.32408 -30.65585 -28.27909 -26.92635 -25.90349 -24.83263 -22.78953 -21.43129 -19.15559 -18.28094 -16.62609 -16.15513 -15.39470 -14.95183 -14.26302 -13.65816 -13.47945 -13.03203 -12.89047 -12.58573 -12.37984 -12.02953 -11.83281 -11.57880 -11.51876 -11.01842 -10.93500 -10.82093 -10.52016 -10.46422 -10.30760 -10.04056 -9.93741 -9.68704 -9.39698 -9.28809 -8.78851 -8.39791 -7.25298 -5.98894 -4.01954 3.31719 3.38291 3.41662 4.42468 4.52071 4.93641 4.99999 5.18821 5.32879 5.52165 5.53795 5.70224 5.86389 5.95882 6.10509 6.14615 6.23694 6.25014 6.44102 6.48260 6.54677 6.57928 6.66723 6.77050 6.82823 6.89400 7.15878 7.26488 7.41405 7.61792 7.73679 7.85627 7.96886 8.13382 8.34952 8.57135 9.03269 9.61910 11.07852 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.008935 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.000766 B = 3133.061500 C = 3549.457239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.205 3.795 4 H -0.002 1.002 5 C -0.494 4.494 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.275 1.275 12 H -0.288 1.288 13 N -0.492 5.492 14 C 0.002 3.998 15 C 0.108 3.892 16 H 0.051 0.949 17 O -0.554 6.554 18 C -0.068 4.068 19 C -0.113 4.113 20 C -0.137 4.137 21 C 0.059 3.941 22 H 0.054 0.946 23 H 0.013 0.987 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.010 0.990 27 H 0.259 0.741 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.368 0.632 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 3.449 10.611 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C 0.099 3.901 4 H 0.015 0.985 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.200 1.200 12 H -0.214 1.214 13 N -0.216 5.216 14 C -0.127 4.127 15 C 0.049 3.951 16 H 0.069 0.931 17 O -0.359 6.359 18 C -0.069 4.069 19 C -0.171 4.171 20 C -0.195 4.195 21 C -0.069 4.069 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.214 0.786 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.541 3.898 10.182 10.916 hybrid contribution 0.855 -0.284 -0.781 1.192 sum 0.315 3.614 9.401 10.077 Atomic orbital electron populations 1.21451 0.97216 0.97181 1.01909 1.21496 0.95314 0.97999 0.99734 1.19476 0.92948 0.91364 0.86338 0.98484 1.21029 1.30884 1.11801 0.89583 0.92113 1.24900 0.95253 0.95122 0.98863 1.69884 1.37497 1.23216 1.22700 0.86576 0.78653 0.80121 0.82550 1.20699 1.19959 1.21422 1.65462 1.53406 1.00807 1.01955 1.23749 0.97873 0.97538 0.93508 1.22616 0.86088 0.95205 0.91175 0.93130 1.86561 1.41324 1.41617 1.66352 1.21440 0.96253 0.93492 0.95700 1.21434 0.96719 0.98675 1.00231 1.21874 0.97233 0.99617 1.00754 1.22983 0.98635 0.92628 0.92686 0.92699 0.96766 0.93384 0.89248 0.97149 0.93073 0.90733 0.94543 0.78552 0.93331 0.93824 0.91479 0.92842 0.92236 0.92930 0.94481 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.47 37.16 0.35 -2.37 16 2 C -0.11 -2.59 5.31 -26.73 -0.14 -2.73 16 3 C 0.21 5.12 1.52 -68.87 -0.10 5.02 16 4 H 0.00 -0.07 7.98 -51.93 -0.41 -0.48 16 5 C -0.49 -13.35 6.89 -34.44 -0.24 -13.58 16 6 H 0.06 1.67 7.01 -52.48 -0.37 1.30 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 8 N -0.89 -25.30 11.33 55.43 0.63 -24.68 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.49 -10.55 4.38 -223.40 -0.98 -11.53 16 14 C 0.00 0.04 5.23 -2.18 -0.01 0.03 16 15 C 0.11 1.68 4.05 -25.35 -0.10 1.58 16 16 H 0.05 0.70 7.71 -51.93 -0.40 0.30 16 17 O -0.55 -8.19 11.56 -35.23 -0.41 -8.60 16 18 C -0.07 -1.10 1.03 -153.13 -0.16 -1.25 16 19 C -0.11 -1.78 7.47 37.16 0.28 -1.50 16 20 C -0.14 -1.85 8.26 37.16 0.31 -1.54 16 21 C 0.06 1.16 4.81 -2.18 -0.01 1.15 16 22 H 0.05 1.34 7.39 -51.93 -0.38 0.96 16 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 24 H 0.05 1.07 7.48 -51.93 -0.39 0.68 16 25 H 0.09 2.40 6.10 -51.93 -0.32 2.09 16 26 H 0.01 0.22 6.98 -51.93 -0.36 -0.14 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.07 1.32 7.58 -51.93 -0.39 0.92 16 29 H 0.04 0.68 7.91 -51.93 -0.41 0.27 16 30 H 0.37 3.92 9.09 45.56 0.41 4.34 16 31 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 34 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.76 7.65 -51.93 -0.40 0.37 16 38 H 0.08 1.64 7.18 -51.93 -0.37 1.27 16 LS Contribution 292.30 15.07 4.40 4.40 Total: -1.00 -28.88 292.30 -7.16 -36.05 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.86 Total: 1.65 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.35 Total: -36.21 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.41 Total: -8.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.88 -7.16 -36.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.681 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds