Wall clock time and date at job start Mon Mar 30 2020 03:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47541 * 2 1 4 4 H 1.08997 * 109.47300 * 181.17894 * 3 2 1 5 5 C 1.50697 * 109.47207 * 301.18310 * 3 2 1 6 6 H 1.08004 * 120.00177 * 119.99211 * 5 3 2 7 7 C 1.37878 * 119.99638 * 299.99812 * 5 3 2 8 8 N 1.31515 * 120.00111 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99895 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46969 * 269.99619 * 9 7 5 11 11 H 1.48492 * 109.47088 * 29.99403 * 9 7 5 12 12 H 1.48493 * 109.47197 * 150.00012 * 9 7 5 13 13 N 1.46900 * 109.46781 * 61.17940 * 3 2 1 14 14 C 1.48562 * 111.00338 * 63.70799 * 13 3 2 15 15 C 1.54377 * 104.59444 * 159.03905 * 14 13 3 16 16 H 1.09006 * 110.32080 * 217.24931 * 15 14 13 17 17 O 1.42901 * 110.32373 * 95.05128 * 15 14 13 18 18 C 1.54253 * 105.06314 * 336.14708 * 15 14 13 19 19 C 1.53004 * 110.32359 * 118.89678 * 18 15 14 20 20 C 1.53003 * 110.32836 * 241.00243 * 18 15 14 21 21 C 1.48568 * 111.00208 * 179.12859 * 13 3 2 22 22 H 1.09000 * 109.46721 * 65.43072 * 1 2 3 23 23 H 1.08993 * 109.47271 * 185.43482 * 1 2 3 24 24 H 1.08999 * 109.46811 * 305.43207 * 1 2 3 25 25 H 1.08998 * 109.47293 * 239.99633 * 2 1 3 26 26 H 1.09006 * 109.47286 * 120.00133 * 2 1 3 27 27 H 0.97002 * 119.99911 * 180.02562 * 8 7 5 28 28 H 1.08996 * 110.41593 * 277.82083 * 14 13 3 29 29 H 1.08999 * 110.40933 * 40.14305 * 14 13 3 30 30 H 0.96695 * 114.00311 * 61.44443 * 17 15 14 31 31 H 1.08999 * 109.47200 * 59.99884 * 19 18 15 32 32 H 1.08998 * 109.47374 * 180.02562 * 19 18 15 33 33 H 1.09000 * 109.47180 * 300.00386 * 19 18 15 34 34 H 1.08999 * 109.46941 * 59.99844 * 20 18 15 35 35 H 1.09001 * 109.47271 * 179.97438 * 20 18 15 36 36 H 1.09003 * 109.46794 * 300.00223 * 20 18 15 37 37 H 1.09003 * 110.40666 * 319.73980 * 21 13 3 38 38 H 1.09004 * 110.40981 * 82.17580 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1299 1.4425 -0.0211 5 6 1.5140 2.1613 -1.2155 6 1 0.8952 3.0387 -1.0983 7 6 1.8227 1.6989 -2.4772 8 7 2.5766 0.6308 -2.6199 9 14 1.1712 2.5904 -3.9840 10 1 -0.1448 2.0186 -4.3669 11 1 1.0126 4.0341 -3.6749 12 1 2.1277 2.4269 -5.1080 13 7 1.5739 2.1266 1.2135 14 6 2.1458 1.4983 2.4321 15 6 2.0338 2.5874 3.5205 16 1 2.9060 2.5609 4.1737 17 8 0.8374 2.4078 4.2810 18 6 1.9828 3.9218 2.7484 19 6 0.6666 4.6492 3.0307 20 6 3.1706 4.8053 3.1352 21 6 2.0683 3.5269 1.2585 22 1 -0.3633 0.4273 -0.9346 23 1 -0.3633 -1.0230 0.0973 24 1 -0.3633 0.5958 0.8373 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.7940 0.3056 -3.5076 28 1 1.5671 0.6186 2.7136 29 1 3.1890 1.2291 2.2671 30 1 0.7937 1.5647 4.7524 31 1 0.5857 4.8527 4.0985 32 1 0.6451 5.5888 2.4787 33 1 -0.1688 4.0239 2.7158 34 1 4.1004 4.2901 2.8939 35 1 3.1212 5.7432 2.5820 36 1 3.1367 5.0118 4.2050 37 1 3.1000 3.5771 0.9105 38 1 1.4311 4.1746 0.6563 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:37 Heat of formation + Delta-G solvation = -75.848255 kcal Electronic energy + Delta-G solvation = -17214.410803 eV Core-core repulsion = 14669.552569 eV Total energy + Delta-G solvation = -2544.858234 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.73805 -37.48700 -35.83746 -34.15575 -32.48398 -29.85513 -28.16435 -27.65489 -26.51992 -24.52997 -22.99783 -20.95719 -19.67261 -18.17132 -17.81861 -17.14530 -16.51468 -15.99447 -15.19324 -15.01860 -14.78415 -14.25877 -14.08481 -14.01865 -13.69892 -13.13757 -13.06144 -12.89592 -12.85191 -12.67952 -12.45708 -12.32527 -12.09144 -11.82283 -11.76420 -11.56842 -11.23456 -11.09202 -10.81987 -10.67893 -10.48503 -9.01836 -8.09663 -6.19142 1.39628 1.41063 1.50393 2.41925 3.18436 3.35332 3.47583 3.66466 3.84217 4.18695 4.29851 4.44597 4.55517 4.59013 4.71774 4.75379 4.80372 4.87648 4.88436 4.95346 5.00406 5.10611 5.16272 5.23988 5.32742 5.36622 5.40433 5.47540 5.62088 5.70898 5.74578 5.84178 6.24715 6.36410 6.65762 6.92529 7.03060 7.48428 8.96084 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031208 B = 0.008935 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.000766 B = 3133.061500 C = 3549.457239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.102 4.102 3 C 0.213 3.787 4 H -0.042 1.042 5 C -0.503 4.503 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.270 1.270 12 H -0.284 1.284 13 N -0.502 5.502 14 C -0.001 4.001 15 C 0.120 3.880 16 H 0.079 0.921 17 O -0.562 6.562 18 C -0.067 4.067 19 C -0.106 4.106 20 C -0.132 4.132 21 C 0.058 3.942 22 H 0.029 0.971 23 H 0.038 0.962 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.388 0.612 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.020 0.980 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 4.087 12.137 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.141 4.141 3 C 0.105 3.895 4 H -0.024 1.024 5 C -0.542 4.542 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.195 1.195 12 H -0.210 1.210 13 N -0.226 5.226 14 C -0.129 4.129 15 C 0.060 3.940 16 H 0.097 0.903 17 O -0.370 6.370 18 C -0.067 4.067 19 C -0.163 4.163 20 C -0.190 4.190 21 C -0.070 4.070 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.237 0.763 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.964 4.530 11.732 12.613 hybrid contribution 0.983 -0.506 -1.217 1.644 sum 0.019 4.024 10.516 11.259 Atomic orbital electron populations 1.21292 0.95855 0.98571 1.00651 1.21368 0.96368 0.97288 0.99068 1.19244 0.90453 0.92181 0.87603 1.02419 1.21206 1.30606 1.11591 0.90788 0.93141 1.25599 0.95512 0.95811 1.01440 1.70008 1.38395 1.24292 1.23187 0.85665 0.78126 0.79170 0.79368 1.20275 1.19514 1.20991 1.65362 1.53714 1.01691 1.01802 1.23863 0.97301 0.98777 0.93001 1.22508 0.87467 0.93301 0.90718 0.90319 1.86523 1.40963 1.43218 1.66262 1.21451 0.97831 0.94608 0.92858 1.21353 0.95371 0.98388 1.01195 1.21836 0.95719 0.99153 1.02259 1.22968 0.96974 0.91540 0.95536 0.95133 0.94285 0.93004 0.92147 0.95469 0.93093 0.90102 0.95244 0.76284 0.91780 0.93088 0.93971 0.92892 0.91721 0.90615 0.96126 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.47 71.98 0.68 -4.09 16 2 C -0.10 -5.00 5.31 30.59 0.16 -4.84 16 3 C 0.21 10.89 1.52 44.17 0.07 10.96 16 4 H -0.04 -2.40 7.98 -2.39 -0.02 -2.42 16 5 C -0.50 -27.85 6.89 25.60 0.18 -27.68 16 6 H 0.05 2.84 7.01 -2.91 -0.02 2.82 16 7 C 0.01 0.83 5.30 84.65 0.45 1.28 16 8 N -0.92 -53.19 11.33 21.45 0.24 -52.94 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.50 -21.63 4.38 -860.72 -3.77 -25.40 16 14 C 0.00 -0.02 5.23 86.45 0.45 0.43 16 15 C 0.12 3.39 4.05 31.49 0.13 3.52 16 16 H 0.08 1.86 7.71 -2.38 -0.02 1.84 16 17 O -0.56 -14.85 11.56 -148.98 -1.72 -16.58 16 18 C -0.07 -2.03 1.03 -51.29 -0.05 -2.08 16 19 C -0.11 -3.11 7.47 71.98 0.54 -2.57 16 20 C -0.13 -3.20 8.26 71.98 0.59 -2.61 16 21 C 0.06 2.31 4.81 86.45 0.42 2.73 16 22 H 0.03 1.48 7.39 -2.39 -0.02 1.46 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 2.25 7.48 -2.39 -0.02 2.23 16 25 H 0.06 3.31 6.10 -2.39 -0.01 3.30 16 26 H 0.03 1.20 6.98 -2.38 -0.02 1.18 16 27 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 29 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 30 H 0.39 6.92 9.09 -74.06 -0.67 6.24 16 31 H 0.06 1.69 7.90 -2.39 -0.02 1.67 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.44 7.90 -2.39 -0.02 1.42 16 34 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.02 0.87 7.65 -2.39 -0.02 0.85 16 38 H 0.06 2.56 7.18 -2.39 -0.02 2.55 16 Total: -1.00 -62.53 292.30 0.73 -61.80 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 0.35 Total: 11.68 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 3.61 Total: -24.95 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -3.53 Total: -78.35 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -1.72 Total: -16.58 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -62.53 0.73 -61.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.044 kcal (2) G-P(sol) polarization free energy of solvation -62.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds