Wall clock time and date at job start Mon Mar 30 2020 03:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 H 1.09004 * 109.46870 * 180.96708 * 3 2 1 5 5 C 1.50700 * 109.47012 * 300.96680 * 3 2 1 6 6 H 1.08004 * 119.99825 * 119.72437 * 5 3 2 7 7 C 1.37879 * 120.00293 * 299.99991 * 5 3 2 8 8 N 1.31511 * 120.00158 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99566 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46727 * 90.00178 * 9 7 5 11 11 H 1.48501 * 109.46875 * 209.99740 * 9 7 5 12 12 H 1.48492 * 109.47540 * 329.99948 * 9 7 5 13 13 N 1.46895 * 109.47219 * 60.96750 * 3 2 1 14 14 C 1.48562 * 111.00216 * 63.61919 * 13 3 2 15 15 C 1.54376 * 104.59730 * 159.03968 * 14 13 3 16 16 H 1.09002 * 110.32163 * 95.14750 * 15 14 13 17 17 O 1.42898 * 110.32619 * 217.25510 * 15 14 13 18 18 C 1.54255 * 105.06040 * 336.15116 * 15 14 13 19 19 C 1.53001 * 110.32655 * 118.89233 * 18 15 14 20 20 C 1.53003 * 110.32503 * 241.10063 * 18 15 14 21 21 C 1.48561 * 111.00394 * 179.03827 * 13 3 2 22 22 H 1.09002 * 109.46905 * 305.41950 * 1 2 3 23 23 H 1.09001 * 109.47407 * 65.41774 * 1 2 3 24 24 H 1.08997 * 109.47514 * 185.41780 * 1 2 3 25 25 H 1.08998 * 109.47026 * 240.00234 * 2 1 3 26 26 H 1.08996 * 109.47258 * 120.00496 * 2 1 3 27 27 H 0.96996 * 120.00021 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.41360 * 277.82610 * 14 13 3 29 29 H 1.09002 * 110.40754 * 40.26391 * 14 13 3 30 30 H 0.96699 * 113.99743 * 298.54500 * 17 15 14 31 31 H 1.09003 * 109.46823 * 60.00056 * 19 18 15 32 32 H 1.09000 * 109.47422 * 179.97438 * 19 18 15 33 33 H 1.08996 * 109.47209 * 300.00526 * 19 18 15 34 34 H 1.09004 * 109.46747 * 60.00295 * 20 18 15 35 35 H 1.09003 * 109.47187 * 179.97438 * 20 18 15 36 36 H 1.08999 * 109.46969 * 300.00115 * 20 18 15 37 37 H 1.09001 * 110.41136 * 319.74473 * 21 13 3 38 38 H 1.09005 * 110.41088 * 82.17802 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4424 -0.0173 5 6 1.5182 2.1597 -1.2183 6 1 0.8953 3.0347 -1.1043 7 6 1.8313 1.6958 -2.4784 8 7 1.3763 2.3220 -3.5415 9 14 2.9028 0.1784 -2.6753 10 1 2.0440 -1.0325 -2.7136 11 1 3.6745 0.2782 -3.9402 12 1 3.8418 0.0832 -1.5289 13 7 1.5696 2.1282 1.2109 14 6 2.1356 1.5000 2.4324 15 6 2.0205 2.5901 3.5195 16 1 1.1061 2.4537 4.0970 17 8 3.1603 2.5547 4.3806 18 6 1.9743 3.9240 2.7462 19 6 0.6579 4.6532 3.0224 20 6 3.1630 4.8053 3.1354 21 6 2.0656 3.5278 1.2570 22 1 -0.3633 0.5956 0.8375 23 1 -0.3634 0.4275 -0.9345 24 1 -0.3634 -1.0230 0.0970 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.5968 1.9958 -4.4280 28 1 1.5546 0.6212 2.7121 29 1 3.1798 1.2314 2.2727 30 1 3.2658 1.7213 4.8594 31 1 0.5728 4.8577 4.0897 32 1 0.6402 5.5928 2.4702 33 1 -0.1770 4.0287 2.7045 34 1 4.0923 4.2879 2.8969 35 1 3.1170 5.7428 2.5813 36 1 3.1267 5.0127 4.2049 37 1 3.0988 3.5764 0.9132 38 1 1.4318 4.1758 0.6516 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307027877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:40 Heat of formation + Delta-G solvation = -48.036054 kcal Electronic energy + Delta-G solvation = -17229.162807 eV Core-core repulsion = 14685.510601 eV Total energy + Delta-G solvation = -2543.652206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45292 -36.20909 -34.60768 -32.34416 -31.22627 -28.46395 -26.96032 -26.29701 -24.85423 -22.73803 -21.72897 -19.27385 -18.43803 -17.12087 -16.31905 -15.65013 -14.64095 -14.27129 -14.22615 -13.54667 -13.43738 -13.13643 -12.78319 -12.48411 -12.28755 -11.98757 -11.83615 -11.64559 -11.21172 -11.07717 -10.86358 -10.64328 -10.59441 -10.31943 -10.13237 -10.00239 -9.86222 -9.60916 -9.31307 -8.96847 -8.53756 -7.53384 -6.07244 -4.04577 3.25783 3.35533 3.37118 4.30201 4.39366 4.89280 4.94448 5.08525 5.24991 5.27420 5.56572 5.62558 5.76822 5.97247 5.99879 6.11316 6.12522 6.14786 6.18969 6.25779 6.33221 6.35755 6.43706 6.54202 6.65533 6.70383 6.74939 6.87869 7.04856 7.09694 7.41673 7.51069 7.77772 7.88844 7.94615 8.62509 8.99699 9.55182 11.05593 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.008969 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.534105 B = 3121.023081 C = 3337.052449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.118 4.118 3 C 0.175 3.825 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.271 1.271 13 N -0.485 5.485 14 C -0.004 4.004 15 C 0.106 3.894 16 H 0.062 0.938 17 O -0.563 6.563 18 C -0.067 4.067 19 C -0.131 4.131 20 C -0.121 4.121 21 C 0.060 3.940 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.370 0.630 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 -0.337 13.316 13.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.156 4.156 3 C 0.067 3.933 4 H 0.016 0.984 5 C -0.535 4.535 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.711 3.289 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.210 5.210 14 C -0.133 4.133 15 C 0.047 3.953 16 H 0.080 0.920 17 O -0.368 6.368 18 C -0.068 4.068 19 C -0.188 4.188 20 C -0.178 4.178 21 C -0.068 4.068 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.217 0.783 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.747 0.246 12.849 12.873 hybrid contribution 1.421 -1.620 -0.177 2.163 sum 2.168 -1.375 12.672 12.929 Atomic orbital electron populations 1.21475 0.95256 0.98097 1.03416 1.21820 0.97633 0.97926 0.98223 1.19930 0.93003 0.91124 0.89218 0.98418 1.20847 1.31696 1.13253 0.87727 0.90041 1.24875 0.95533 0.96641 0.95910 1.69871 1.45468 1.40368 0.97976 0.86958 0.81041 0.84061 0.76799 1.20428 1.22472 1.19592 1.65318 1.53185 1.01379 1.01113 1.23819 0.98489 0.97700 0.93267 1.22663 0.87447 0.95318 0.89889 0.92036 1.86555 1.48362 1.40684 1.61155 1.21404 0.96236 0.93644 0.95508 1.21792 0.96498 1.00150 1.00393 1.21523 0.97320 0.98278 1.00693 1.23013 0.99102 0.91739 0.92968 0.92289 0.91534 0.95999 0.93754 0.94983 0.92665 0.90823 0.93926 0.78342 0.93391 0.92414 0.91694 0.92631 0.93267 0.92764 0.94109 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.47 37.16 0.35 -2.25 16 2 C -0.12 -2.60 5.01 -26.73 -0.13 -2.73 16 3 C 0.18 4.12 1.12 -68.87 -0.08 4.05 16 4 H 0.00 -0.04 7.03 -51.93 -0.37 -0.41 16 5 C -0.50 -13.59 7.48 -34.44 -0.26 -13.85 16 6 H 0.08 2.43 7.27 -52.48 -0.38 2.05 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 9 Si 0.88 22.00 24.37 -169.99 -4.14 17.86 16 10 H -0.28 -6.77 6.88 56.52 0.39 -6.38 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 13 N -0.49 -9.86 4.37 -223.41 -0.98 -10.84 16 14 C 0.00 -0.06 5.22 -2.18 -0.01 -0.07 16 15 C 0.11 1.56 4.04 -25.35 -0.10 1.46 16 16 H 0.06 0.84 7.71 -51.93 -0.40 0.44 16 17 O -0.56 -7.57 11.56 -35.23 -0.41 -7.98 16 18 C -0.07 -1.05 1.03 -153.13 -0.16 -1.21 16 19 C -0.13 -1.83 8.24 37.16 0.31 -1.52 16 20 C -0.12 -1.76 7.49 37.16 0.28 -1.48 16 21 C 0.06 1.16 4.81 -2.18 -0.01 1.15 16 22 H 0.06 1.18 7.47 -51.93 -0.39 0.79 16 23 H 0.07 1.55 7.39 -51.93 -0.38 1.17 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 1.03 3.29 -51.93 -0.17 0.86 16 26 H 0.03 0.62 6.99 -51.93 -0.36 0.26 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.07 1.16 7.67 -51.93 -0.40 0.76 16 29 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.37 3.41 9.11 45.56 0.41 3.82 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.87 7.85 -51.93 -0.41 0.46 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.75 7.90 -51.93 -0.41 0.34 16 37 H 0.04 0.84 7.64 -51.93 -0.40 0.45 16 38 H 0.08 1.75 7.19 -51.93 -0.37 1.38 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -29.87 285.52 -6.09 -35.95 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.73 Total: 1.53 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 0.09 Total: -14.52 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.20 Total: -37.16 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.41 Total: -7.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.87 -6.09 -35.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.082 kcal (2) G-P(sol) polarization free energy of solvation -29.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds