Wall clock time and date at job start Mon Mar 30 2020 03:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47306 * 2 1 4 4 H 1.09004 * 109.46870 * 180.96708 * 3 2 1 5 5 C 1.50700 * 109.47012 * 300.96680 * 3 2 1 6 6 H 1.08004 * 119.99825 * 119.72437 * 5 3 2 7 7 C 1.37879 * 120.00293 * 299.99991 * 5 3 2 8 8 N 1.31511 * 120.00158 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99566 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46727 * 90.00178 * 9 7 5 11 11 H 1.48501 * 109.46875 * 209.99740 * 9 7 5 12 12 H 1.48492 * 109.47540 * 329.99948 * 9 7 5 13 13 N 1.46895 * 109.47219 * 60.96750 * 3 2 1 14 14 C 1.48562 * 111.00216 * 63.61919 * 13 3 2 15 15 C 1.54376 * 104.59730 * 159.03968 * 14 13 3 16 16 H 1.09002 * 110.32163 * 95.14750 * 15 14 13 17 17 O 1.42898 * 110.32619 * 217.25510 * 15 14 13 18 18 C 1.54255 * 105.06040 * 336.15116 * 15 14 13 19 19 C 1.53001 * 110.32655 * 118.89233 * 18 15 14 20 20 C 1.53003 * 110.32503 * 241.10063 * 18 15 14 21 21 C 1.48561 * 111.00394 * 179.03827 * 13 3 2 22 22 H 1.09002 * 109.46905 * 305.41950 * 1 2 3 23 23 H 1.09001 * 109.47407 * 65.41774 * 1 2 3 24 24 H 1.08997 * 109.47514 * 185.41780 * 1 2 3 25 25 H 1.08998 * 109.47026 * 240.00234 * 2 1 3 26 26 H 1.08996 * 109.47258 * 120.00496 * 2 1 3 27 27 H 0.96996 * 120.00021 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.41360 * 277.82610 * 14 13 3 29 29 H 1.09002 * 110.40754 * 40.26391 * 14 13 3 30 30 H 0.96699 * 113.99743 * 298.54500 * 17 15 14 31 31 H 1.09003 * 109.46823 * 60.00056 * 19 18 15 32 32 H 1.09000 * 109.47422 * 179.97438 * 19 18 15 33 33 H 1.08996 * 109.47209 * 300.00526 * 19 18 15 34 34 H 1.09004 * 109.46747 * 60.00295 * 20 18 15 35 35 H 1.09003 * 109.47187 * 179.97438 * 20 18 15 36 36 H 1.08999 * 109.46969 * 300.00115 * 20 18 15 37 37 H 1.09001 * 110.41136 * 319.74473 * 21 13 3 38 38 H 1.09005 * 110.41088 * 82.17802 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4424 -0.0173 5 6 1.5182 2.1597 -1.2183 6 1 0.8953 3.0347 -1.1043 7 6 1.8313 1.6958 -2.4784 8 7 1.3763 2.3220 -3.5415 9 14 2.9028 0.1784 -2.6753 10 1 2.0440 -1.0325 -2.7136 11 1 3.6745 0.2782 -3.9402 12 1 3.8418 0.0832 -1.5289 13 7 1.5696 2.1282 1.2109 14 6 2.1356 1.5000 2.4324 15 6 2.0205 2.5901 3.5195 16 1 1.1061 2.4537 4.0970 17 8 3.1603 2.5547 4.3806 18 6 1.9743 3.9240 2.7462 19 6 0.6579 4.6532 3.0224 20 6 3.1630 4.8053 3.1354 21 6 2.0656 3.5278 1.2570 22 1 -0.3633 0.5956 0.8375 23 1 -0.3634 0.4275 -0.9345 24 1 -0.3634 -1.0230 0.0970 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.5968 1.9958 -4.4280 28 1 1.5546 0.6212 2.7121 29 1 3.1798 1.2314 2.2727 30 1 3.2658 1.7213 4.8594 31 1 0.5728 4.8577 4.0897 32 1 0.6402 5.5928 2.4702 33 1 -0.1770 4.0287 2.7045 34 1 4.0923 4.2879 2.8969 35 1 3.1170 5.7428 2.5813 36 1 3.1267 5.0127 4.2049 37 1 3.0988 3.5764 0.9132 38 1 1.4318 4.1758 0.6516 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:39 Heat of formation + Delta-G solvation = -70.796096 kcal Electronic energy + Delta-G solvation = -17230.149756 eV Core-core repulsion = 14685.510601 eV Total energy + Delta-G solvation = -2544.639156 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83680 -37.71783 -35.92186 -34.27613 -32.91579 -30.01388 -28.16415 -27.96997 -26.46431 -24.47560 -23.18105 -21.04990 -19.75699 -18.60518 -18.02981 -17.33786 -16.35168 -15.81542 -15.46111 -15.08734 -14.95439 -14.81022 -14.67813 -13.93504 -13.76362 -13.32863 -13.12656 -12.95457 -12.86696 -12.61244 -12.56535 -12.39156 -12.16592 -11.98125 -11.70813 -11.55849 -11.23541 -11.16772 -10.93743 -10.77338 -10.66780 -9.20059 -8.28405 -6.29020 1.26142 1.30728 1.39522 2.29477 3.03838 3.10679 3.53486 3.61341 3.81668 4.04859 4.29013 4.33699 4.36374 4.41803 4.52848 4.58201 4.75187 4.83856 4.87225 4.90981 4.95063 4.97105 5.05612 5.13045 5.16830 5.27002 5.29016 5.32544 5.38849 5.54865 5.62399 5.74088 5.98360 6.17018 6.60540 6.75339 6.95844 7.34318 8.88129 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033225 B = 0.008969 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.534105 B = 3121.023081 C = 3337.052449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.179 3.821 4 H -0.019 1.019 5 C -0.490 4.490 6 H 0.040 0.960 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.938 3.062 10 H -0.263 1.263 11 H -0.299 1.299 12 H -0.258 1.258 13 N -0.494 5.494 14 C -0.004 4.004 15 C 0.118 3.882 16 H 0.083 0.917 17 O -0.569 6.569 18 C -0.066 4.066 19 C -0.126 4.126 20 C -0.114 4.114 21 C 0.060 3.940 22 H 0.064 0.936 23 H 0.030 0.970 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.035 0.965 30 H 0.391 0.609 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.018 0.982 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -1.852 15.999 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.156 4.156 3 C 0.071 3.929 4 H -0.002 1.002 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.180 4.180 8 N -0.587 5.587 9 Si 0.766 3.234 10 H -0.189 1.189 11 H -0.227 1.227 12 H -0.183 1.183 13 N -0.218 5.218 14 C -0.133 4.133 15 C 0.059 3.941 16 H 0.101 0.899 17 O -0.376 6.376 18 C -0.067 4.067 19 C -0.183 4.183 20 C -0.172 4.172 21 C -0.069 4.069 22 H 0.083 0.917 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.053 0.947 30 H 0.241 0.759 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.070 -1.287 15.572 15.662 hybrid contribution 1.306 -1.066 -0.962 1.941 sum 2.376 -2.353 14.609 14.987 Atomic orbital electron populations 1.21376 0.94476 0.99870 1.01707 1.21787 0.98296 0.96372 0.99177 1.19742 0.91683 0.92350 0.89136 1.00187 1.21005 1.30185 1.11987 0.89629 0.94136 1.25634 0.97039 0.99721 0.95610 1.70015 1.47632 1.42473 0.98550 0.86007 0.79636 0.80860 0.76855 1.18896 1.22693 1.18291 1.65217 1.53519 1.01759 1.01299 1.23948 0.98129 0.99043 0.92172 1.22490 0.88803 0.93287 0.89534 0.89875 1.86519 1.47750 1.42414 1.60917 1.21405 0.97681 0.94963 0.92656 1.21746 0.94945 0.99686 1.01965 1.21462 0.96077 0.97998 1.01622 1.22955 0.96904 0.91285 0.95727 0.91724 0.95100 0.92838 0.94899 0.91709 0.92665 0.88852 0.94668 0.75884 0.90874 0.92454 0.92681 0.94016 0.92944 0.91203 0.96399 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 9.47 71.98 0.68 -3.97 16 2 C -0.12 -4.95 5.01 30.59 0.15 -4.80 16 3 C 0.18 8.43 1.12 44.17 0.05 8.48 16 4 H -0.02 -0.96 7.03 -2.38 -0.02 -0.98 16 5 C -0.49 -27.72 7.48 25.60 0.19 -27.53 16 6 H 0.04 2.57 7.27 -2.91 -0.02 2.55 16 7 C 0.02 1.00 5.45 84.66 0.46 1.46 16 8 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 9 Si 0.94 45.59 24.37 68.60 1.67 47.27 16 10 H -0.26 -12.11 6.88 99.48 0.68 -11.42 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16 13 N -0.49 -19.78 4.37 -860.73 -3.77 -23.55 16 14 C 0.00 -0.13 5.22 86.45 0.45 0.32 16 15 C 0.12 3.10 4.04 31.49 0.13 3.23 16 16 H 0.08 1.90 7.71 -2.39 -0.02 1.88 16 17 O -0.57 -13.16 11.56 -148.98 -1.72 -14.88 16 18 C -0.07 -1.97 1.03 -51.29 -0.05 -2.02 16 19 C -0.13 -3.27 8.24 71.98 0.59 -2.68 16 20 C -0.11 -3.14 7.49 71.98 0.54 -2.60 16 21 C 0.06 2.35 4.81 86.45 0.42 2.76 16 22 H 0.06 2.46 7.47 -2.39 -0.02 2.45 16 23 H 0.03 1.42 7.39 -2.39 -0.02 1.40 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.03 1.45 3.29 -2.39 -0.01 1.45 16 26 H 0.06 2.29 6.99 -2.39 -0.02 2.27 16 27 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.09 2.56 7.67 -2.39 -0.02 2.54 16 29 H 0.04 1.16 7.86 -2.39 -0.02 1.14 16 30 H 0.39 5.52 9.11 -74.06 -0.67 4.85 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.04 1.25 7.85 -2.38 -0.02 1.23 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16 37 H 0.02 0.76 7.64 -2.39 -0.02 0.75 16 38 H 0.06 2.56 7.19 -2.38 -0.02 2.54 16 Total: -1.00 -66.14 285.52 0.37 -65.78 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.27 Total: 11.67 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.61 Total: -27.36 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -3.47 Total: -82.46 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.72 Total: -14.88 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.67 Total: 47.27 kcal Total: -66.14 0.37 -65.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.020 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds