Wall clock time and date at job start Mon Mar 30 2020 03:49:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47306 * 2 1
4 4 H 1.09004 * 109.46870 * 180.96708 * 3 2 1
5 5 C 1.50700 * 109.47012 * 300.96680 * 3 2 1
6 6 H 1.08004 * 119.99825 * 119.72437 * 5 3 2
7 7 C 1.37879 * 120.00293 * 299.99991 * 5 3 2
8 8 N 1.31511 * 120.00158 * 180.02562 * 7 5 3
9 9 Si 1.86802 * 119.99566 * 359.97438 * 7 5 3
10 10 H 1.48504 * 109.46727 * 90.00178 * 9 7 5
11 11 H 1.48501 * 109.46875 * 209.99740 * 9 7 5
12 12 H 1.48492 * 109.47540 * 329.99948 * 9 7 5
13 13 N 1.46895 * 109.47219 * 60.96750 * 3 2 1
14 14 C 1.48562 * 111.00216 * 63.61919 * 13 3 2
15 15 C 1.54376 * 104.59730 * 159.03968 * 14 13 3
16 16 H 1.09002 * 110.32163 * 95.14750 * 15 14 13
17 17 O 1.42898 * 110.32619 * 217.25510 * 15 14 13
18 18 C 1.54255 * 105.06040 * 336.15116 * 15 14 13
19 19 C 1.53001 * 110.32655 * 118.89233 * 18 15 14
20 20 C 1.53003 * 110.32503 * 241.10063 * 18 15 14
21 21 C 1.48561 * 111.00394 * 179.03827 * 13 3 2
22 22 H 1.09002 * 109.46905 * 305.41950 * 1 2 3
23 23 H 1.09001 * 109.47407 * 65.41774 * 1 2 3
24 24 H 1.08997 * 109.47514 * 185.41780 * 1 2 3
25 25 H 1.08998 * 109.47026 * 240.00234 * 2 1 3
26 26 H 1.08996 * 109.47258 * 120.00496 * 2 1 3
27 27 H 0.96996 * 120.00021 * 179.97438 * 8 7 5
28 28 H 1.08999 * 110.41360 * 277.82610 * 14 13 3
29 29 H 1.09002 * 110.40754 * 40.26391 * 14 13 3
30 30 H 0.96699 * 113.99743 * 298.54500 * 17 15 14
31 31 H 1.09003 * 109.46823 * 60.00056 * 19 18 15
32 32 H 1.09000 * 109.47422 * 179.97438 * 19 18 15
33 33 H 1.08996 * 109.47209 * 300.00526 * 19 18 15
34 34 H 1.09004 * 109.46747 * 60.00295 * 20 18 15
35 35 H 1.09003 * 109.47187 * 179.97438 * 20 18 15
36 36 H 1.08999 * 109.46969 * 300.00115 * 20 18 15
37 37 H 1.09001 * 110.41136 * 319.74473 * 21 13 3
38 38 H 1.09005 * 110.41088 * 82.17802 * 21 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1299 1.4424 -0.0173
5 6 1.5182 2.1597 -1.2183
6 1 0.8953 3.0347 -1.1043
7 6 1.8313 1.6958 -2.4784
8 7 1.3763 2.3220 -3.5415
9 14 2.9028 0.1784 -2.6753
10 1 2.0440 -1.0325 -2.7136
11 1 3.6745 0.2782 -3.9402
12 1 3.8418 0.0832 -1.5289
13 7 1.5696 2.1282 1.2109
14 6 2.1356 1.5000 2.4324
15 6 2.0205 2.5901 3.5195
16 1 1.1061 2.4537 4.0970
17 8 3.1603 2.5547 4.3806
18 6 1.9743 3.9240 2.7462
19 6 0.6579 4.6532 3.0224
20 6 3.1630 4.8053 3.1354
21 6 2.0656 3.5278 1.2570
22 1 -0.3633 0.5956 0.8375
23 1 -0.3634 0.4275 -0.9345
24 1 -0.3634 -1.0230 0.0970
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8899
27 1 1.5968 1.9958 -4.4280
28 1 1.5546 0.6212 2.7121
29 1 3.1798 1.2314 2.2727
30 1 3.2658 1.7213 4.8594
31 1 0.5728 4.8577 4.0897
32 1 0.6402 5.5928 2.4702
33 1 -0.1770 4.0287 2.7045
34 1 4.0923 4.2879 2.8969
35 1 3.1170 5.7428 2.5813
36 1 3.1267 5.0127 4.2049
37 1 3.0988 3.5764 0.9132
38 1 1.4318 4.1758 0.6516
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307027877.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:49:39
Heat of formation + Delta-G solvation = -70.796096 kcal
Electronic energy + Delta-G solvation = -17230.149756 eV
Core-core repulsion = 14685.510601 eV
Total energy + Delta-G solvation = -2544.639156 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.83680 -37.71783 -35.92186 -34.27613 -32.91579 -30.01388 -28.16415 -27.96997
-26.46431 -24.47560 -23.18105 -21.04990 -19.75699 -18.60518 -18.02981 -17.33786
-16.35168 -15.81542 -15.46111 -15.08734 -14.95439 -14.81022 -14.67813 -13.93504
-13.76362 -13.32863 -13.12656 -12.95457 -12.86696 -12.61244 -12.56535 -12.39156
-12.16592 -11.98125 -11.70813 -11.55849 -11.23541 -11.16772 -10.93743 -10.77338
-10.66780 -9.20059 -8.28405 -6.29020 1.26142 1.30728 1.39522 2.29477
3.03838 3.10679 3.53486 3.61341 3.81668 4.04859 4.29013 4.33699
4.36374 4.41803 4.52848 4.58201 4.75187 4.83856 4.87225 4.90981
4.95063 4.97105 5.05612 5.13045 5.16830 5.27002 5.29016 5.32544
5.38849 5.54865 5.62399 5.74088 5.98360 6.17018 6.60540 6.75339
6.95844 7.34318 8.88129
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.033225 B = 0.008969 C = 0.008389
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 842.534105 B = 3121.023081 C = 3337.052449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.119 4.119
3 C 0.179 3.821
4 H -0.019 1.019
5 C -0.490 4.490
6 H 0.040 0.960
7 C 0.017 3.983
8 N -0.946 5.946
9 Si 0.938 3.062
10 H -0.263 1.263
11 H -0.299 1.299
12 H -0.258 1.258
13 N -0.494 5.494
14 C -0.004 4.004
15 C 0.118 3.882
16 H 0.083 0.917
17 O -0.569 6.569
18 C -0.066 4.066
19 C -0.126 4.126
20 C -0.114 4.114
21 C 0.060 3.940
22 H 0.064 0.936
23 H 0.030 0.970
24 H 0.053 0.947
25 H 0.033 0.967
26 H 0.064 0.936
27 H 0.264 0.736
28 H 0.093 0.907
29 H 0.035 0.965
30 H 0.391 0.609
31 H 0.072 0.928
32 H 0.056 0.944
33 H 0.054 0.946
34 H 0.041 0.959
35 H 0.052 0.948
36 H 0.069 0.931
37 H 0.018 0.982
38 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.581 -1.852 15.999 16.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.156 4.156
3 C 0.071 3.929
4 H -0.002 1.002
5 C -0.528 4.528
6 H 0.059 0.941
7 C -0.180 4.180
8 N -0.587 5.587
9 Si 0.766 3.234
10 H -0.189 1.189
11 H -0.227 1.227
12 H -0.183 1.183
13 N -0.218 5.218
14 C -0.133 4.133
15 C 0.059 3.941
16 H 0.101 0.899
17 O -0.376 6.376
18 C -0.067 4.067
19 C -0.183 4.183
20 C -0.172 4.172
21 C -0.069 4.069
22 H 0.083 0.917
23 H 0.049 0.951
24 H 0.072 0.928
25 H 0.051 0.949
26 H 0.083 0.917
27 H 0.073 0.927
28 H 0.111 0.889
29 H 0.053 0.947
30 H 0.241 0.759
31 H 0.091 0.909
32 H 0.075 0.925
33 H 0.073 0.927
34 H 0.060 0.940
35 H 0.071 0.929
36 H 0.088 0.912
37 H 0.036 0.964
38 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 1.070 -1.287 15.572 15.662
hybrid contribution 1.306 -1.066 -0.962 1.941
sum 2.376 -2.353 14.609 14.987
Atomic orbital electron populations
1.21376 0.94476 0.99870 1.01707 1.21787 0.98296 0.96372 0.99177
1.19742 0.91683 0.92350 0.89136 1.00187 1.21005 1.30185 1.11987
0.89629 0.94136 1.25634 0.97039 0.99721 0.95610 1.70015 1.47632
1.42473 0.98550 0.86007 0.79636 0.80860 0.76855 1.18896 1.22693
1.18291 1.65217 1.53519 1.01759 1.01299 1.23948 0.98129 0.99043
0.92172 1.22490 0.88803 0.93287 0.89534 0.89875 1.86519 1.47750
1.42414 1.60917 1.21405 0.97681 0.94963 0.92656 1.21746 0.94945
0.99686 1.01965 1.21462 0.96077 0.97998 1.01622 1.22955 0.96904
0.91285 0.95727 0.91724 0.95100 0.92838 0.94899 0.91709 0.92665
0.88852 0.94668 0.75884 0.90874 0.92454 0.92681 0.94016 0.92944
0.91203 0.96399 0.92327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.65 9.47 71.98 0.68 -3.97 16
2 C -0.12 -4.95 5.01 30.59 0.15 -4.80 16
3 C 0.18 8.43 1.12 44.17 0.05 8.48 16
4 H -0.02 -0.96 7.03 -2.38 -0.02 -0.98 16
5 C -0.49 -27.72 7.48 25.60 0.19 -27.53 16
6 H 0.04 2.57 7.27 -2.91 -0.02 2.55 16
7 C 0.02 1.00 5.45 84.66 0.46 1.46 16
8 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16
9 Si 0.94 45.59 24.37 68.60 1.67 47.27 16
10 H -0.26 -12.11 6.88 99.48 0.68 -11.42 16
11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16
12 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16
13 N -0.49 -19.78 4.37 -860.73 -3.77 -23.55 16
14 C 0.00 -0.13 5.22 86.45 0.45 0.32 16
15 C 0.12 3.10 4.04 31.49 0.13 3.23 16
16 H 0.08 1.90 7.71 -2.39 -0.02 1.88 16
17 O -0.57 -13.16 11.56 -148.98 -1.72 -14.88 16
18 C -0.07 -1.97 1.03 -51.29 -0.05 -2.02 16
19 C -0.13 -3.27 8.24 71.98 0.59 -2.68 16
20 C -0.11 -3.14 7.49 71.98 0.54 -2.60 16
21 C 0.06 2.35 4.81 86.45 0.42 2.76 16
22 H 0.06 2.46 7.47 -2.39 -0.02 2.45 16
23 H 0.03 1.42 7.39 -2.39 -0.02 1.40 16
24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
25 H 0.03 1.45 3.29 -2.39 -0.01 1.45 16
26 H 0.06 2.29 6.99 -2.39 -0.02 2.27 16
27 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16
28 H 0.09 2.56 7.67 -2.39 -0.02 2.54 16
29 H 0.04 1.16 7.86 -2.39 -0.02 1.14 16
30 H 0.39 5.52 9.11 -74.06 -0.67 4.85 16
31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
34 H 0.04 1.25 7.85 -2.38 -0.02 1.23 16
35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
36 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16
37 H 0.02 0.76 7.64 -2.39 -0.02 0.75 16
38 H 0.06 2.56 7.19 -2.38 -0.02 2.54 16
Total: -1.00 -66.14 285.52 0.37 -65.78
By element:
Atomic # 1 Polarization: 11.39 SS G_CDS: 0.27 Total: 11.67 kcal
Atomic # 6 Polarization: -30.97 SS G_CDS: 3.61 Total: -27.36 kcal
Atomic # 7 Polarization: -79.00 SS G_CDS: -3.47 Total: -82.46 kcal
Atomic # 8 Polarization: -13.16 SS G_CDS: -1.72 Total: -14.88 kcal
Atomic # 14 Polarization: 45.59 SS G_CDS: 1.67 Total: 47.27 kcal
Total: -66.14 0.37 -65.78 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307027877.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.020 kcal
(2) G-P(sol) polarization free energy of solvation -66.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds