Wall clock time and date at job start Mon Mar 30 2020 03:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 H 1.08993 * 109.47345 * 179.44685 * 3 2 1 5 5 C 1.50709 * 109.47078 * 59.44623 * 3 2 1 6 6 H 1.07996 * 119.99897 * 240.00728 * 5 3 2 7 7 C 1.37879 * 119.99469 * 60.00183 * 5 3 2 8 8 N 1.31509 * 120.00417 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99627 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46970 * 89.99881 * 9 7 5 11 11 H 1.48495 * 109.47113 * 209.99912 * 9 7 5 12 12 H 1.48506 * 109.47121 * 330.00389 * 9 7 5 13 13 N 1.46907 * 109.46961 * 299.45178 * 3 2 1 14 14 C 1.48531 * 110.99776 * 300.06172 * 13 3 2 15 15 C 1.54938 * 103.22725 * 200.28252 * 14 13 3 16 16 H 1.09000 * 110.72209 * 279.05759 * 15 14 13 17 17 O 1.42902 * 110.72304 * 155.77237 * 15 14 13 18 18 C 1.54589 * 102.92068 * 37.41679 * 15 14 13 19 19 C 1.52999 * 110.30835 * 219.12884 * 18 15 14 20 20 C 1.52995 * 110.31443 * 96.96081 * 18 15 14 21 21 C 1.47901 * 110.99752 * 182.66798 * 13 3 2 22 22 H 1.09004 * 109.47185 * 304.52399 * 1 2 3 23 23 H 1.08996 * 109.47551 * 64.52923 * 1 2 3 24 24 H 1.09008 * 109.47058 * 184.52608 * 1 2 3 25 25 H 1.09006 * 109.46829 * 240.00132 * 2 1 3 26 26 H 1.08997 * 109.47420 * 120.00120 * 2 1 3 27 27 H 0.96997 * 120.00019 * 179.97438 * 8 7 5 28 28 H 1.08998 * 110.67089 * 318.71790 * 14 13 3 29 29 H 1.09004 * 110.66687 * 81.67757 * 14 13 3 30 30 H 0.96701 * 113.99852 * 66.50000 * 17 15 14 31 31 H 1.09003 * 109.47808 * 177.17255 * 19 18 15 32 32 H 1.09005 * 109.47175 * 297.17068 * 19 18 15 33 33 H 1.09000 * 109.47276 * 57.16549 * 19 18 15 34 34 H 1.09002 * 109.46618 * 302.82945 * 20 18 15 35 35 H 1.08999 * 109.46848 * 62.82208 * 20 18 15 36 36 H 1.08992 * 109.47917 * 182.82782 * 20 18 15 37 37 H 1.09004 * 109.91863 * 26.49069 * 21 13 3 38 38 H 1.09001 * 110.08362 * 265.28649 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4425 0.0099 5 6 1.5265 2.1568 1.2236 6 1 0.9065 3.0345 1.1160 7 6 1.8482 1.6897 2.4803 8 7 2.6027 0.6206 2.6113 9 14 1.2111 2.5748 3.9970 10 1 -0.1005 2.0005 4.3908 11 1 2.1791 2.4078 5.1107 12 1 1.0482 4.0197 3.6951 13 7 1.5612 2.1311 -1.2061 14 6 2.0473 1.4527 -2.4347 15 6 1.9188 2.5507 -3.5204 16 1 0.8926 2.6179 -3.8814 17 8 2.8210 2.3020 -4.6003 18 6 2.3168 3.8366 -2.7602 19 6 1.4278 5.0049 -3.1913 20 6 3.7893 4.1677 -3.0110 21 6 2.0878 3.5116 -1.2724 22 1 -0.3634 0.5824 0.8467 23 1 -0.3634 0.4419 -0.9277 24 1 -0.3633 -1.0245 0.0811 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 2.8293 0.2923 3.4954 28 1 3.0868 1.1458 -2.3191 29 1 1.4188 0.5951 -2.6750 30 1 2.6152 1.5060 -5.1094 31 1 1.6861 5.8912 -2.6118 32 1 1.5815 5.2065 -4.2515 33 1 0.3825 4.7493 -3.0180 34 1 4.4080 3.3221 -2.7105 35 1 3.9407 4.3701 -4.0713 36 1 4.0682 5.0466 -2.4299 37 1 3.0305 3.5759 -0.7290 38 1 1.3658 4.2085 -0.8469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307027878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:41 Heat of formation + Delta-G solvation = -57.073202 kcal Electronic energy + Delta-G solvation = -17161.958129 eV Core-core repulsion = 14617.914043 eV Total energy + Delta-G solvation = -2544.044086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32877 -36.00017 -34.50582 -32.31875 -30.65478 -28.27366 -27.01498 -25.92775 -24.82632 -22.79523 -21.42494 -19.04981 -18.38284 -17.05491 -15.98820 -15.45504 -14.55850 -14.09926 -13.92221 -13.59705 -13.31112 -12.92692 -12.57389 -12.29990 -11.97301 -11.86444 -11.77564 -11.51315 -11.18220 -10.94585 -10.80200 -10.62660 -10.47689 -10.26928 -10.04751 -9.92241 -9.69271 -9.41877 -9.31978 -8.81948 -8.40583 -7.25480 -5.99607 -4.02934 3.31024 3.37718 3.40872 4.33867 4.44929 4.97664 5.07009 5.24173 5.29103 5.36352 5.56857 5.74434 5.83364 5.96647 6.10247 6.18525 6.27076 6.31465 6.36965 6.44478 6.49416 6.58334 6.60751 6.74966 6.78615 6.82054 7.11644 7.23541 7.40706 7.61498 7.71405 7.84433 7.87872 8.11576 8.33427 8.55569 9.02240 9.60914 11.07056 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032130 B = 0.008660 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.242973 B = 3232.542790 C = 3651.317614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.209 3.791 4 H -0.001 1.001 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.503 5.503 14 C 0.007 3.993 15 C 0.105 3.895 16 H 0.065 0.935 17 O -0.563 6.563 18 C -0.073 4.073 19 C -0.132 4.132 20 C -0.122 4.122 21 C 0.061 3.939 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.015 0.985 25 H 0.011 0.989 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.371 0.629 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 3.339 -10.453 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.103 3.897 4 H 0.016 0.984 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.229 5.229 14 C -0.122 4.122 15 C 0.046 3.954 16 H 0.083 0.917 17 O -0.367 6.367 18 C -0.073 4.073 19 C -0.190 4.190 20 C -0.179 4.179 21 C -0.067 4.067 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.218 0.782 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.277 3.776 -10.031 10.794 hybrid contribution 0.321 -0.243 0.775 0.874 sum -0.957 3.533 -9.255 9.953 Atomic orbital electron populations 1.21468 0.97258 0.97595 1.01444 1.21530 0.95240 0.98101 0.99947 1.19484 0.92906 0.91135 0.86197 0.98373 1.21017 1.30918 1.11834 0.89554 0.92112 1.24901 0.95240 0.95125 0.98887 1.69877 1.37249 1.23044 1.23056 0.86572 0.78588 0.80080 0.82631 1.20704 1.21399 1.19956 1.64834 1.55056 1.00989 1.02001 1.23759 0.98785 0.97140 0.92494 1.22836 0.91722 0.94864 0.86022 0.91732 1.86499 1.55744 1.48611 1.45894 1.21495 0.96214 0.93858 0.95767 1.21827 0.99387 0.97310 1.00452 1.21578 0.94536 1.00676 1.01118 1.22766 0.99222 0.92696 0.92062 0.92078 0.94261 0.96602 0.97018 0.89091 0.93036 0.94048 0.91025 0.78235 0.92586 0.93104 0.92336 0.92895 0.92503 0.93323 0.93550 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.53 37.16 0.35 -2.31 16 2 C -0.11 -2.63 5.22 -26.74 -0.14 -2.77 16 3 C 0.21 5.21 1.44 -68.86 -0.10 5.11 16 4 H 0.00 -0.04 7.99 -51.93 -0.42 -0.45 16 5 C -0.49 -13.27 6.77 -34.44 -0.23 -13.50 16 6 H 0.06 1.65 7.42 -52.49 -0.39 1.26 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.50 -10.69 4.44 -223.88 -1.00 -11.69 16 14 C 0.01 0.13 5.14 -1.90 -0.01 0.12 16 15 C 0.10 1.63 3.85 -24.87 -0.10 1.54 16 16 H 0.06 0.96 7.86 -51.93 -0.41 0.55 16 17 O -0.56 -7.91 11.89 -35.23 -0.42 -8.33 16 18 C -0.07 -1.17 0.95 -153.16 -0.15 -1.32 16 19 C -0.13 -1.83 8.22 37.16 0.31 -1.53 16 20 C -0.12 -1.89 7.55 37.16 0.28 -1.61 16 21 C 0.06 1.20 5.12 -2.75 -0.01 1.18 16 22 H 0.06 1.47 7.04 -51.93 -0.37 1.11 16 23 H 0.04 0.82 7.76 -51.93 -0.40 0.42 16 24 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 25 H 0.01 0.25 6.90 -51.93 -0.36 -0.11 16 26 H 0.09 2.43 6.08 -51.93 -0.32 2.12 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.04 0.81 8.00 -51.93 -0.42 0.40 16 29 H 0.07 1.26 7.64 -51.93 -0.40 0.86 16 30 H 0.37 3.63 9.12 45.56 0.42 4.05 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 1.00 7.23 -51.93 -0.38 0.62 16 38 H 0.07 1.44 7.53 -51.93 -0.39 1.05 16 LS Contribution 292.99 15.07 4.42 4.42 Total: -1.00 -28.59 292.99 -7.17 -35.76 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.89 Total: 1.78 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 0.11 Total: -13.56 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.37 Total: -36.31 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.42 Total: -8.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.59 -7.17 -35.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.317 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds