Wall clock time and date at job start Mon Mar 30 2020 03:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 H 1.08993 * 109.47345 * 179.44685 * 3 2 1 5 5 C 1.50709 * 109.47078 * 59.44623 * 3 2 1 6 6 H 1.07996 * 119.99897 * 240.00728 * 5 3 2 7 7 C 1.37879 * 119.99469 * 60.00183 * 5 3 2 8 8 N 1.31509 * 120.00417 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99627 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46970 * 89.99881 * 9 7 5 11 11 H 1.48495 * 109.47113 * 209.99912 * 9 7 5 12 12 H 1.48506 * 109.47121 * 330.00389 * 9 7 5 13 13 N 1.46907 * 109.46961 * 299.45178 * 3 2 1 14 14 C 1.48531 * 110.99776 * 300.06172 * 13 3 2 15 15 C 1.54938 * 103.22725 * 200.28252 * 14 13 3 16 16 H 1.09000 * 110.72209 * 279.05759 * 15 14 13 17 17 O 1.42902 * 110.72304 * 155.77237 * 15 14 13 18 18 C 1.54589 * 102.92068 * 37.41679 * 15 14 13 19 19 C 1.52999 * 110.30835 * 219.12884 * 18 15 14 20 20 C 1.52995 * 110.31443 * 96.96081 * 18 15 14 21 21 C 1.47901 * 110.99752 * 182.66798 * 13 3 2 22 22 H 1.09004 * 109.47185 * 304.52399 * 1 2 3 23 23 H 1.08996 * 109.47551 * 64.52923 * 1 2 3 24 24 H 1.09008 * 109.47058 * 184.52608 * 1 2 3 25 25 H 1.09006 * 109.46829 * 240.00132 * 2 1 3 26 26 H 1.08997 * 109.47420 * 120.00120 * 2 1 3 27 27 H 0.96997 * 120.00019 * 179.97438 * 8 7 5 28 28 H 1.08998 * 110.67089 * 318.71790 * 14 13 3 29 29 H 1.09004 * 110.66687 * 81.67757 * 14 13 3 30 30 H 0.96701 * 113.99852 * 66.50000 * 17 15 14 31 31 H 1.09003 * 109.47808 * 177.17255 * 19 18 15 32 32 H 1.09005 * 109.47175 * 297.17068 * 19 18 15 33 33 H 1.09000 * 109.47276 * 57.16549 * 19 18 15 34 34 H 1.09002 * 109.46618 * 302.82945 * 20 18 15 35 35 H 1.08999 * 109.46848 * 62.82208 * 20 18 15 36 36 H 1.08992 * 109.47917 * 182.82782 * 20 18 15 37 37 H 1.09004 * 109.91863 * 26.49069 * 21 13 3 38 38 H 1.09001 * 110.08362 * 265.28649 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1299 1.4425 0.0099 5 6 1.5265 2.1568 1.2236 6 1 0.9065 3.0345 1.1160 7 6 1.8482 1.6897 2.4803 8 7 2.6027 0.6206 2.6113 9 14 1.2111 2.5748 3.9970 10 1 -0.1005 2.0005 4.3908 11 1 2.1791 2.4078 5.1107 12 1 1.0482 4.0197 3.6951 13 7 1.5612 2.1311 -1.2061 14 6 2.0473 1.4527 -2.4347 15 6 1.9188 2.5507 -3.5204 16 1 0.8926 2.6179 -3.8814 17 8 2.8210 2.3020 -4.6003 18 6 2.3168 3.8366 -2.7602 19 6 1.4278 5.0049 -3.1913 20 6 3.7893 4.1677 -3.0110 21 6 2.0878 3.5116 -1.2724 22 1 -0.3634 0.5824 0.8467 23 1 -0.3634 0.4419 -0.9277 24 1 -0.3633 -1.0245 0.0811 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 2.8293 0.2923 3.4954 28 1 3.0868 1.1458 -2.3191 29 1 1.4188 0.5951 -2.6750 30 1 2.6152 1.5060 -5.1094 31 1 1.6861 5.8912 -2.6118 32 1 1.5815 5.2065 -4.2515 33 1 0.3825 4.7493 -3.0180 34 1 4.4080 3.3221 -2.7105 35 1 3.9407 4.3701 -4.0713 36 1 4.0682 5.0466 -2.4299 37 1 3.0305 3.5759 -0.7290 38 1 1.3658 4.2085 -0.8469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307027878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:41 Heat of formation + Delta-G solvation = -77.030676 kcal Electronic energy + Delta-G solvation = -17162.823550 eV Core-core repulsion = 14617.914043 eV Total energy + Delta-G solvation = -2544.909507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77762 -37.56704 -35.92778 -34.14893 -32.46084 -29.88189 -28.19726 -27.72782 -26.51448 -24.52758 -22.99479 -20.87557 -19.78256 -18.40534 -17.87827 -17.15487 -16.34822 -15.58253 -15.35816 -15.16600 -14.95436 -14.44189 -14.12661 -14.03293 -13.53399 -13.32130 -13.11631 -12.96686 -12.83233 -12.58516 -12.55111 -12.39521 -12.06559 -11.93787 -11.73062 -11.56237 -11.20859 -11.12639 -10.83409 -10.72305 -10.48535 -9.04482 -8.09350 -6.19365 1.40931 1.41894 1.51493 2.42144 3.10489 3.19505 3.64118 3.65973 3.83461 4.02960 4.33299 4.37126 4.53310 4.57969 4.71677 4.76086 4.84291 4.85607 4.89019 4.91616 5.00754 5.06302 5.11529 5.23633 5.28974 5.37862 5.38881 5.43844 5.53899 5.71760 5.73933 5.84505 6.25311 6.35298 6.62458 6.92095 6.94535 7.48246 8.96466 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032130 B = 0.008660 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.242973 B = 3232.542790 C = 3651.317614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.217 3.783 4 H -0.047 1.047 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.507 5.507 14 C 0.006 3.994 15 C 0.120 3.880 16 H 0.084 0.916 17 O -0.567 6.567 18 C -0.073 4.073 19 C -0.126 4.126 20 C -0.116 4.116 21 C 0.061 3.939 22 H 0.037 0.963 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.026 0.974 26 H 0.060 0.940 27 H 0.260 0.740 28 H 0.021 0.979 29 H 0.083 0.917 30 H 0.393 0.607 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.029 0.971 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 4.113 -11.909 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.110 3.890 4 H -0.030 1.030 5 C -0.541 4.541 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.231 5.231 14 C -0.123 4.123 15 C 0.060 3.940 16 H 0.102 0.898 17 O -0.374 6.374 18 C -0.073 4.073 19 C -0.183 4.183 20 C -0.173 4.173 21 C -0.067 4.067 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.101 0.899 30 H 0.242 0.758 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.513 4.544 -11.514 12.631 hybrid contribution 0.758 -0.514 1.179 1.493 sum -1.754 4.030 -10.335 11.231 Atomic orbital electron populations 1.21321 0.95461 0.98646 1.01049 1.21402 0.96688 0.97187 0.99117 1.19242 0.90088 0.92146 0.87561 1.02986 1.21203 1.30611 1.11667 0.90621 0.92766 1.25633 0.95472 0.95802 1.01623 1.70014 1.38238 1.24235 1.23544 0.85630 0.78095 0.79177 0.79215 1.20068 1.21211 1.19387 1.64733 1.54896 1.01743 1.01772 1.23850 0.97644 0.98510 0.92289 1.22641 0.92846 0.92890 0.85579 0.89842 1.86461 1.55560 1.50052 1.45306 1.21501 0.97222 0.95472 0.93132 1.21775 0.98724 0.96219 1.01625 1.21519 0.93799 1.00006 1.01983 1.22763 0.97397 0.91840 0.94735 0.94419 0.92869 0.94465 0.95573 0.92144 0.93102 0.96085 0.89882 0.75787 0.91982 0.91238 0.92145 0.95154 0.91086 0.92680 0.96572 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.53 71.98 0.69 -3.98 16 2 C -0.11 -5.12 5.22 30.59 0.16 -4.96 16 3 C 0.22 11.13 1.44 44.17 0.06 11.20 16 4 H -0.05 -2.80 7.99 -2.39 -0.02 -2.82 16 5 C -0.50 -27.57 6.77 25.60 0.17 -27.39 16 6 H 0.05 2.99 7.42 -2.91 -0.02 2.96 16 7 C 0.01 0.73 5.30 84.66 0.45 1.18 16 8 N -0.92 -53.42 11.32 21.45 0.24 -53.17 16 9 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.51 -21.57 4.44 -862.21 -3.83 -25.40 16 14 C 0.01 0.21 5.14 86.65 0.44 0.65 16 15 C 0.12 3.44 3.85 31.80 0.12 3.57 16 16 H 0.08 2.15 7.86 -2.39 -0.02 2.14 16 17 O -0.57 -14.23 11.89 -148.98 -1.77 -16.01 16 18 C -0.07 -2.23 0.95 -51.31 -0.05 -2.28 16 19 C -0.13 -3.12 8.22 71.98 0.59 -2.52 16 20 C -0.12 -3.45 7.55 71.98 0.54 -2.91 16 21 C 0.06 2.41 5.12 86.45 0.44 2.86 16 22 H 0.04 1.79 7.04 -2.38 -0.02 1.77 16 23 H 0.05 2.13 7.76 -2.39 -0.02 2.11 16 24 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.03 1.15 6.90 -2.38 -0.02 1.14 16 26 H 0.06 3.32 6.08 -2.39 -0.01 3.30 16 27 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.02 0.83 8.00 -2.39 -0.02 0.81 16 29 H 0.08 2.75 7.64 -2.38 -0.02 2.73 16 30 H 0.39 6.34 9.12 -74.06 -0.68 5.66 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 34 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.92 7.65 -2.39 -0.02 1.90 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.02 0.72 7.23 -2.38 -0.02 0.70 16 38 H 0.07 2.70 7.53 -2.39 -0.02 2.69 16 Total: -1.00 -62.20 292.99 0.63 -61.56 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.34 Total: 11.56 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.63 Total: -24.59 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -3.59 Total: -78.58 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -1.77 Total: -16.01 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.20 0.63 -61.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307027878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.469 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds