Wall clock time and date at job start Mon Mar 30 2020 03:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 H 1.09000 * 109.47585 * 304.99831 * 3 2 1 5 5 C 1.50702 * 109.46836 * 184.99818 * 3 2 1 6 6 H 1.07998 * 120.00002 * 240.00013 * 5 3 2 7 7 C 1.37880 * 119.99814 * 60.00396 * 5 3 2 8 8 N 1.31513 * 119.99885 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99891 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46895 * 59.99907 * 9 7 5 11 11 H 1.48493 * 109.47259 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46870 * 300.00012 * 9 7 5 13 13 N 1.46900 * 109.47123 * 65.00149 * 3 2 1 14 14 C 1.47015 * 111.00069 * 56.36014 * 13 3 2 15 15 C 1.53097 * 109.26158 * 182.38988 * 14 13 3 16 16 O 1.43013 * 109.25870 * 303.15664 * 15 14 13 17 17 C 1.43017 * 113.74055 * 58.66803 * 16 15 14 18 18 H 1.09000 * 109.54572 * 61.28506 * 17 16 15 19 19 C 1.53002 * 109.50633 * 181.39728 * 17 16 15 20 20 C 1.47016 * 111.00239 * 179.97438 * 13 3 2 21 21 H 1.09004 * 109.50347 * 297.54426 * 20 13 3 22 22 C 1.53001 * 109.50110 * 57.62866 * 20 13 3 23 23 H 1.09005 * 109.47071 * 59.99712 * 1 2 3 24 24 H 1.08995 * 109.47093 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47258 * 299.99780 * 1 2 3 26 26 H 1.09001 * 109.46898 * 240.00542 * 2 1 3 27 27 H 1.08992 * 109.47210 * 119.99979 * 2 1 3 28 28 H 0.96997 * 119.99578 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.50762 * 302.33252 * 14 13 3 30 30 H 1.09010 * 109.50807 * 62.45600 * 14 13 3 31 31 H 1.08991 * 109.51223 * 183.21641 * 15 14 13 32 32 H 1.09002 * 109.50310 * 63.08603 * 15 14 13 33 33 H 1.08998 * 109.46814 * 179.78092 * 19 17 16 34 34 H 1.09004 * 109.46790 * 299.78001 * 19 17 16 35 35 H 1.09000 * 109.47322 * 59.77870 * 19 17 16 36 36 H 1.08997 * 109.47097 * 60.00357 * 22 20 13 37 37 H 1.09003 * 109.46581 * 179.97438 * 22 20 13 38 38 H 1.08995 * 109.47553 * 299.99739 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3979 0.2169 -2.6503 12 1 6.4994 2.2816 -1.3821 13 7 1.6513 2.0993 1.2552 14 6 2.1484 1.3495 2.4180 15 6 1.6716 2.0340 3.7018 16 8 2.1152 3.3936 3.7042 17 6 1.6489 4.1534 2.5859 18 1 0.5595 4.1881 2.5974 19 6 2.2062 5.5760 2.6666 20 6 2.1260 3.4902 1.2911 21 1 3.2153 3.5041 1.2547 22 6 1.5648 4.2526 0.0891 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8292 -0.0608 -2.9499 29 1 1.7645 0.3299 2.3849 30 1 3.2382 1.3295 2.3994 31 1 2.0850 1.5147 4.5663 32 1 0.5829 2.0064 3.7461 33 1 1.8535 6.1534 1.8121 34 1 1.8665 6.0475 3.5889 35 1 3.2956 5.5406 2.6566 36 1 0.4756 4.2396 0.1270 37 1 1.9167 5.2839 0.1165 38 1 1.9020 3.7776 -0.8321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307087508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:10 Heat of formation + Delta-G solvation = -48.836332 kcal Electronic energy + Delta-G solvation = -17462.048850 eV Core-core repulsion = 14918.361941 eV Total energy + Delta-G solvation = -2543.686909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31380 -36.09691 -33.50495 -32.43159 -31.07245 -28.50397 -27.68958 -26.00767 -23.75158 -22.26363 -21.87792 -19.77375 -18.82386 -16.28430 -15.91840 -15.56519 -14.87410 -14.51358 -14.13341 -13.56552 -13.30472 -12.84852 -12.38053 -12.31076 -12.23451 -11.79183 -11.41292 -11.28723 -11.13791 -11.11182 -10.87909 -10.68515 -10.54748 -10.35149 -10.17545 -9.71361 -9.65140 -9.43784 -9.20164 -8.72942 -8.33989 -7.14844 -5.99467 -4.12663 3.27303 3.32422 3.35697 4.23461 4.39064 4.89285 5.23679 5.34367 5.53150 5.66315 5.72640 5.85636 5.93752 5.98584 6.02896 6.11350 6.28104 6.32568 6.35226 6.41959 6.47066 6.57602 6.66424 6.74989 6.91644 6.95787 7.05665 7.17632 7.30466 7.61718 7.69357 7.74238 7.96405 8.14228 8.31070 8.44098 8.96682 9.54675 10.99385 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.010716 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.598002 B = 2612.174716 C = 3032.452194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.212 3.788 4 H 0.047 0.953 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.529 5.529 14 C 0.022 3.978 15 C 0.065 3.935 16 O -0.392 6.392 17 C 0.092 3.908 18 H 0.056 0.944 19 C -0.143 4.143 20 C 0.060 3.940 21 H 0.054 0.946 22 C -0.139 4.139 23 H 0.040 0.960 24 H 0.025 0.975 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 4.682 6.704 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.106 3.894 4 H 0.064 0.936 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.254 5.254 14 C -0.107 4.107 15 C -0.012 4.012 16 O -0.311 6.311 17 C 0.034 3.966 18 H 0.074 0.926 19 C -0.201 4.201 20 C -0.049 4.049 21 H 0.072 0.928 22 C -0.197 4.197 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.413 4.669 6.673 9.263 hybrid contribution 1.871 -0.318 -0.432 1.946 sum -2.542 4.351 6.240 8.021 Atomic orbital electron populations 1.21713 0.98830 0.98431 1.00584 1.21681 0.92270 0.99387 1.02084 1.19341 0.93053 0.90891 0.86101 0.93577 1.21679 0.92885 1.38048 1.05432 0.92768 1.24885 0.97709 0.95026 0.95690 1.69857 1.34824 1.38301 1.09424 0.86762 0.86341 0.78247 0.77302 1.20391 1.21257 1.20349 1.62752 1.57977 1.00739 1.03928 1.22611 0.99195 0.98277 0.90605 1.22669 0.98391 0.82235 0.97922 1.87872 1.75196 1.22510 1.45517 1.22211 0.97433 0.90946 0.85984 0.92611 1.21796 1.01896 0.94604 1.01771 1.22008 0.98739 0.90361 0.93800 0.92823 1.21797 1.00345 0.98440 0.99076 0.94134 0.95571 0.93520 0.88862 0.94823 0.92855 0.90203 0.93692 0.89750 0.93407 0.90976 0.92536 0.92130 0.93096 0.93385 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.80 37.16 0.36 -2.41 16 2 C -0.12 -2.70 4.94 -26.73 -0.13 -2.83 16 3 C 0.21 5.09 1.37 -68.86 -0.09 5.00 16 4 H 0.05 1.22 6.27 -51.93 -0.33 0.89 16 5 C -0.54 -14.29 7.10 -34.44 -0.24 -14.53 16 6 H 0.05 1.47 5.79 -52.49 -0.30 1.17 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -24.53 11.29 55.43 0.63 -23.90 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.53 -11.08 4.02 -219.78 -0.88 -11.97 16 14 C 0.02 0.43 4.95 -3.71 -0.02 0.41 16 15 C 0.06 1.09 7.01 37.21 0.26 1.35 16 16 O -0.39 -7.15 10.47 -35.23 -0.37 -7.52 16 17 C 0.09 1.58 2.92 -26.68 -0.08 1.50 16 18 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.14 -2.03 9.29 37.16 0.35 -1.68 16 20 C 0.06 1.18 1.72 -67.60 -0.12 1.07 16 21 H 0.05 1.21 6.55 -51.93 -0.34 0.87 16 22 C -0.14 -2.52 8.61 37.16 0.32 -2.20 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.90 7.75 -51.93 -0.40 0.49 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.03 0.77 6.02 -51.93 -0.31 0.45 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.08 1.55 6.00 -51.93 -0.31 1.24 16 30 H 0.04 0.99 6.78 -51.92 -0.35 0.64 16 31 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.91 6.53 -51.93 -0.34 0.57 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.74 6.53 -51.93 -0.34 0.40 16 38 H 0.07 1.52 6.37 -51.93 -0.33 1.19 16 LS Contribution 283.63 15.07 4.27 4.27 Total: -1.00 -27.40 283.63 -7.04 -34.44 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.18 Total: 1.13 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 0.51 Total: -12.56 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.26 Total: -35.87 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.37 Total: -7.52 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.40 -7.04 -34.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307087508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.392 kcal (2) G-P(sol) polarization free energy of solvation -27.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds