Wall clock time and date at job start Mon Mar 30 2020 03:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46822 * 2 1 4 4 H 1.09000 * 109.47585 * 304.99831 * 3 2 1 5 5 C 1.50702 * 109.46836 * 184.99818 * 3 2 1 6 6 H 1.07998 * 120.00002 * 240.00013 * 5 3 2 7 7 C 1.37880 * 119.99814 * 60.00396 * 5 3 2 8 8 N 1.31513 * 119.99885 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99891 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46895 * 59.99907 * 9 7 5 11 11 H 1.48493 * 109.47259 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46870 * 300.00012 * 9 7 5 13 13 N 1.46900 * 109.47123 * 65.00149 * 3 2 1 14 14 C 1.47015 * 111.00069 * 56.36014 * 13 3 2 15 15 C 1.53097 * 109.26158 * 182.38988 * 14 13 3 16 16 O 1.43013 * 109.25870 * 303.15664 * 15 14 13 17 17 C 1.43017 * 113.74055 * 58.66803 * 16 15 14 18 18 H 1.09000 * 109.54572 * 61.28506 * 17 16 15 19 19 C 1.53002 * 109.50633 * 181.39728 * 17 16 15 20 20 C 1.47016 * 111.00239 * 179.97438 * 13 3 2 21 21 H 1.09004 * 109.50347 * 297.54426 * 20 13 3 22 22 C 1.53001 * 109.50110 * 57.62866 * 20 13 3 23 23 H 1.09005 * 109.47071 * 59.99712 * 1 2 3 24 24 H 1.08995 * 109.47093 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47258 * 299.99780 * 1 2 3 26 26 H 1.09001 * 109.46898 * 240.00542 * 2 1 3 27 27 H 1.08992 * 109.47210 * 119.99979 * 2 1 3 28 28 H 0.96997 * 119.99578 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.50762 * 302.33252 * 14 13 3 30 30 H 1.09010 * 109.50807 * 62.45600 * 14 13 3 31 31 H 1.08991 * 109.51223 * 183.21641 * 15 14 13 32 32 H 1.09002 * 109.50310 * 63.08603 * 15 14 13 33 33 H 1.08998 * 109.46814 * 179.78092 * 19 17 16 34 34 H 1.09004 * 109.46790 * 299.78001 * 19 17 16 35 35 H 1.09000 * 109.47322 * 59.77870 * 19 17 16 36 36 H 1.08997 * 109.47097 * 60.00357 * 22 20 13 37 37 H 1.09003 * 109.46581 * 179.97438 * 22 20 13 38 38 H 1.08995 * 109.47553 * 299.99739 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3979 0.2169 -2.6503 12 1 6.4994 2.2816 -1.3821 13 7 1.6513 2.0993 1.2552 14 6 2.1484 1.3495 2.4180 15 6 1.6716 2.0340 3.7018 16 8 2.1152 3.3936 3.7042 17 6 1.6489 4.1534 2.5859 18 1 0.5595 4.1881 2.5974 19 6 2.2062 5.5760 2.6666 20 6 2.1260 3.4902 1.2911 21 1 3.2153 3.5041 1.2547 22 6 1.5648 4.2526 0.0891 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8292 -0.0608 -2.9499 29 1 1.7645 0.3299 2.3849 30 1 3.2382 1.3295 2.3994 31 1 2.0850 1.5147 4.5663 32 1 0.5829 2.0064 3.7461 33 1 1.8535 6.1534 1.8121 34 1 1.8665 6.0475 3.5889 35 1 3.2956 5.5406 2.6566 36 1 0.4756 4.2396 0.1270 37 1 1.9167 5.2839 0.1165 38 1 1.9020 3.7776 -0.8321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307087508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:10 Heat of formation + Delta-G solvation = -66.169758 kcal Electronic energy + Delta-G solvation = -17462.800484 eV Core-core repulsion = 14918.361941 eV Total energy + Delta-G solvation = -2544.438543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84865 -37.76185 -35.04608 -34.27949 -32.81493 -29.93465 -29.32084 -27.76568 -25.47080 -23.87036 -23.39714 -21.35517 -20.63536 -18.22696 -17.37385 -17.25483 -16.39224 -16.37189 -15.59177 -15.19677 -14.98243 -14.68924 -13.89520 -13.80928 -13.56318 -13.27457 -13.21972 -12.98654 -12.80715 -12.67774 -12.55676 -12.42234 -12.11088 -12.00042 -11.74952 -11.61259 -11.31129 -11.11976 -11.06232 -10.41646 -10.24280 -8.96905 -8.04159 -6.25550 1.34213 1.35678 1.42520 2.38021 2.90960 3.13752 3.30322 3.93276 4.19107 4.24705 4.32156 4.42043 4.52603 4.62129 4.64728 4.71122 4.73559 4.79673 4.90262 4.90923 5.03652 5.05278 5.14544 5.25241 5.25834 5.37086 5.39929 5.45163 5.51144 5.62367 5.80473 6.06021 6.20464 6.31594 6.38306 6.63424 6.94177 7.44313 8.90220 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024141 B = 0.010716 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.598002 B = 2612.174716 C = 3032.452194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.220 3.780 4 H 0.019 0.981 5 C -0.547 4.547 6 H 0.039 0.961 7 C 0.026 3.974 8 N -0.907 5.907 9 Si 0.939 3.061 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.524 5.524 14 C 0.023 3.977 15 C 0.070 3.930 16 O -0.403 6.403 17 C 0.095 3.905 18 H 0.068 0.932 19 C -0.139 4.139 20 C 0.058 3.942 21 H 0.018 0.982 22 C -0.131 4.131 23 H 0.033 0.967 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.082 0.918 30 H 0.013 0.987 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 5.477 8.023 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.113 3.887 4 H 0.037 0.963 5 C -0.586 4.586 6 H 0.057 0.943 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.766 3.234 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.249 5.249 14 C -0.106 4.106 15 C -0.007 4.007 16 O -0.322 6.322 17 C 0.037 3.963 18 H 0.086 0.914 19 C -0.196 4.196 20 C -0.052 4.052 21 H 0.036 0.964 22 C -0.189 4.189 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.128 0.872 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.176 5.471 8.002 10.989 hybrid contribution 2.106 -0.559 -0.830 2.332 sum -3.070 4.912 7.172 9.219 Atomic orbital electron populations 1.21566 0.96082 0.99861 1.00750 1.21537 0.94679 0.98370 1.00472 1.19094 0.91470 0.91302 0.86857 0.96319 1.21861 0.94312 1.37518 1.04943 0.94267 1.25510 1.01293 0.95027 0.95619 1.69970 1.36064 1.38908 1.09721 0.85914 0.82110 0.78121 0.77302 1.20310 1.20632 1.20233 1.62734 1.57571 1.01462 1.03085 1.22657 0.97280 0.98887 0.91769 1.22743 0.99434 0.81610 0.96880 1.87875 1.75633 1.23023 1.45706 1.22298 0.98120 0.91920 0.83967 0.91405 1.21810 1.01195 0.92955 1.03662 1.22112 0.96720 0.90042 0.96285 0.96413 1.21720 1.01028 0.99435 0.96668 0.94757 0.93517 0.92424 0.91921 0.94881 0.92920 0.90003 0.96837 0.87191 0.91731 0.89189 0.90555 0.93152 0.91793 0.90588 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.80 71.98 0.71 -4.18 16 2 C -0.11 -5.27 4.94 30.60 0.15 -5.12 16 3 C 0.22 10.79 1.37 44.17 0.06 10.85 16 4 H 0.02 1.03 6.27 -2.39 -0.01 1.02 16 5 C -0.55 -29.75 7.10 25.60 0.18 -29.57 16 6 H 0.04 2.21 5.79 -2.91 -0.02 2.20 16 7 C 0.03 1.41 5.29 84.66 0.45 1.85 16 8 N -0.91 -51.45 11.29 21.45 0.24 -51.20 16 9 Si 0.94 44.06 29.54 68.60 2.03 46.09 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.52 -21.89 4.02 -849.26 -3.41 -25.30 16 14 C 0.02 0.89 4.95 86.31 0.43 1.32 16 15 C 0.07 2.20 7.01 72.01 0.50 2.70 16 16 O -0.40 -13.83 10.47 -148.98 -1.56 -15.39 16 17 C 0.09 3.03 2.92 30.63 0.09 3.12 16 18 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 19 C -0.14 -3.56 9.29 71.98 0.67 -2.89 16 20 C 0.06 2.24 1.72 44.93 0.08 2.32 16 21 H 0.02 0.82 6.55 -2.39 -0.02 0.81 16 22 C -0.13 -4.67 8.61 71.98 0.62 -4.05 16 23 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 2.11 7.75 -2.39 -0.02 2.09 16 26 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 27 H 0.03 1.52 6.02 -2.39 -0.01 1.50 16 28 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.08 3.11 6.00 -2.39 -0.01 3.10 16 30 H 0.01 0.60 6.78 -2.38 -0.02 0.59 16 31 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 1.97 6.53 -2.39 -0.02 1.95 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.23 6.53 -2.39 -0.02 2.21 16 38 H 0.04 1.59 6.37 -2.39 -0.02 1.57 16 Total: -1.00 -59.64 283.63 2.25 -57.39 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.02 Total: 12.07 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.93 Total: -23.66 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -3.17 Total: -76.50 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.56 Total: -15.39 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -59.64 2.25 -57.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307087508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.782 kcal (2) G-P(sol) polarization free energy of solvation -59.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds