Wall clock time and date at job start Mon Mar 30 2020 03:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47187 * 2 1 4 4 H 1.09002 * 109.46600 * 304.99863 * 3 2 1 5 5 C 1.50704 * 109.47079 * 185.00446 * 3 2 1 6 6 H 1.08002 * 119.99476 * 239.99513 * 5 3 2 7 7 C 1.37873 * 120.00450 * 59.99454 * 5 3 2 8 8 N 1.31516 * 119.99777 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00242 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46902 * 89.99925 * 9 7 5 11 11 H 1.48495 * 109.47474 * 210.00181 * 9 7 5 12 12 H 1.48504 * 109.46928 * 330.00123 * 9 7 5 13 13 N 1.46896 * 109.47182 * 64.99799 * 3 2 1 14 14 C 1.46846 * 110.99895 * 63.67883 * 13 3 2 15 15 C 1.53038 * 109.52370 * 185.83889 * 14 13 3 16 16 H 1.08998 * 109.50456 * 180.87714 * 15 14 13 17 17 O 1.42895 * 109.53414 * 60.78119 * 15 14 13 18 18 C 1.53119 * 109.27763 * 300.81919 * 15 14 13 19 19 C 1.53121 * 109.15958 * 57.65211 * 18 15 14 20 20 C 1.46852 * 110.99940 * 187.88529 * 13 3 2 21 21 H 1.08997 * 109.45196 * 294.17686 * 20 13 3 22 22 C 1.53001 * 109.46159 * 54.14613 * 20 13 3 23 23 H 1.08996 * 109.47110 * 299.99973 * 1 2 3 24 24 H 1.08996 * 109.47225 * 60.00298 * 1 2 3 25 25 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.47176 * 239.99789 * 2 1 3 27 27 H 1.09007 * 109.47169 * 120.00188 * 2 1 3 28 28 H 0.97004 * 119.99770 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.46323 * 65.81718 * 14 13 3 30 30 H 1.09008 * 109.46369 * 305.85280 * 14 13 3 31 31 H 0.96706 * 114.00096 * 180.10004 * 17 15 14 32 32 H 1.08996 * 109.52145 * 177.56124 * 18 15 14 33 33 H 1.08999 * 109.52395 * 297.68618 * 18 15 14 34 34 H 1.09003 * 109.50270 * 62.28852 * 19 18 15 35 35 H 1.09007 * 109.50214 * 182.40347 * 19 18 15 36 36 H 1.08993 * 109.46830 * 173.20216 * 22 20 13 37 37 H 1.09001 * 109.46991 * 293.20798 * 22 20 13 38 38 H 1.09000 * 109.47142 * 53.19993 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0050 0.8799 -1.3812 10 1 6.5538 -0.3521 -0.7598 11 1 6.3836 0.9213 -2.8165 12 1 6.5576 2.0719 -0.6890 13 7 1.6514 2.0993 1.2552 14 6 2.2903 1.4515 2.4078 15 6 1.7522 2.0650 3.7024 16 1 2.2380 1.5948 4.5574 17 8 0.3410 1.8544 3.7804 18 6 2.0460 3.5677 3.7101 19 6 1.4106 4.2103 2.4740 20 6 1.9586 3.5347 1.2151 21 1 3.0387 3.6736 1.1692 22 6 1.3112 4.1602 -0.0221 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8292 -0.0605 -2.9503 29 1 3.3689 1.6003 2.3562 30 1 2.0700 0.3840 2.3928 31 1 -0.0678 2.2197 4.5771 32 1 1.6263 4.0163 4.6104 33 1 3.1240 3.7282 3.6917 34 1 0.3286 4.0835 2.5135 35 1 1.6524 5.2730 2.4514 36 1 1.4360 5.2425 0.0106 37 1 1.7877 3.7664 -0.9199 38 1 0.2488 3.9172 -0.0383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307349618.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:44 Heat of formation + Delta-G solvation = -77.133256 kcal Electronic energy + Delta-G solvation = -17502.860481 eV Core-core repulsion = 14957.946526 eV Total energy + Delta-G solvation = -2544.913956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51817 -37.54165 -35.58023 -33.74718 -32.30600 -31.93221 -28.55334 -27.40017 -25.39998 -24.18081 -22.20200 -21.14531 -20.43277 -18.19146 -17.54427 -17.28008 -16.38080 -15.86449 -15.35955 -15.22669 -14.73332 -14.64861 -14.12946 -13.73807 -13.47872 -13.12845 -13.07512 -12.86750 -12.72195 -12.49732 -12.45393 -12.31330 -11.99788 -11.96816 -11.58488 -11.45040 -11.31911 -11.05101 -10.64740 -10.53548 -10.30241 -8.77216 -7.97782 -6.22356 1.35390 1.37363 1.45510 2.40266 3.17191 3.39544 3.63800 3.98625 4.03173 4.20633 4.38993 4.52921 4.58549 4.68371 4.75976 4.81112 4.87549 4.94051 4.97498 5.02652 5.10710 5.11321 5.21281 5.29716 5.39763 5.42424 5.45724 5.56112 5.59609 5.69837 5.85787 6.12385 6.27551 6.47752 6.82785 7.01950 7.18640 7.48333 8.94422 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.010318 C = 0.009402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.034026 B = 2712.981022 C = 2977.349770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.018 0.982 5 C -0.546 4.546 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.943 3.057 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.513 5.513 14 C 0.066 3.934 15 C 0.113 3.887 16 H 0.067 0.933 17 O -0.564 6.564 18 C -0.145 4.145 19 C -0.098 4.098 20 C 0.083 3.917 21 H 0.011 0.989 22 C -0.132 4.132 23 H 0.055 0.945 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.026 0.974 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.383 0.617 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 5.917 11.016 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.036 0.964 5 C -0.586 4.586 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.238 5.238 14 C -0.062 4.062 15 C 0.054 3.946 16 H 0.085 0.915 17 O -0.370 6.370 18 C -0.183 4.183 19 C -0.136 4.136 20 C -0.026 4.026 21 H 0.029 0.971 22 C -0.189 4.189 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.989 5.491 10.317 12.349 hybrid contribution 2.100 0.002 -0.259 2.116 sum -1.889 5.493 10.058 11.615 Atomic orbital electron populations 1.21531 0.96528 0.99439 1.00538 1.21460 0.94361 0.98798 0.99837 1.19127 0.91500 0.91194 0.87354 0.96449 1.21973 0.94306 1.37284 1.05009 0.93603 1.25582 1.01490 0.95109 0.95639 1.70008 1.36080 1.39145 1.09793 0.85802 0.81877 0.78286 0.77129 1.20356 1.20948 1.19846 1.62335 1.57080 1.01589 1.02752 1.21920 0.95252 0.98487 0.90577 1.21818 0.82185 0.94686 0.95900 0.91544 1.86665 1.20741 1.81876 1.47736 1.22243 1.01055 0.95821 0.99178 1.21490 1.00914 0.98478 0.92685 1.21484 0.96068 0.89110 0.95926 0.97061 1.21721 1.00360 0.99857 0.96987 0.92583 0.94963 0.93992 0.92106 0.95575 0.93056 0.95397 0.92604 0.76921 0.88953 0.92027 0.91219 0.90770 0.91121 0.95001 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 9.80 71.98 0.71 -4.61 16 2 C -0.11 -5.31 5.12 30.59 0.16 -5.15 16 3 C 0.22 10.94 1.40 44.17 0.06 11.00 16 4 H 0.02 1.00 5.92 -2.39 -0.01 0.98 16 5 C -0.55 -29.88 7.21 25.60 0.18 -29.70 16 6 H 0.05 2.53 5.84 -2.91 -0.02 2.51 16 7 C 0.02 1.19 5.29 84.65 0.45 1.63 16 8 N -0.91 -52.70 11.29 21.45 0.24 -52.46 16 9 Si 0.94 44.07 29.54 68.60 2.03 46.10 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.51 -22.02 3.79 -850.39 -3.23 -25.24 16 14 C 0.07 2.64 4.49 86.33 0.39 3.03 16 15 C 0.11 3.34 3.80 30.65 0.12 3.45 16 16 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 17 O -0.56 -16.35 12.65 -148.98 -1.89 -18.24 16 18 C -0.15 -3.68 5.70 30.67 0.17 -3.51 16 19 C -0.10 -2.85 5.22 30.64 0.16 -2.69 16 20 C 0.08 3.20 2.14 44.94 0.10 3.30 16 21 H 0.01 0.50 7.15 -2.39 -0.02 0.48 16 22 C -0.13 -4.96 8.54 71.98 0.61 -4.34 16 23 H 0.06 2.38 7.75 -2.39 -0.02 2.37 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.06 3.40 5.95 -2.38 -0.01 3.39 16 27 H 0.03 1.29 6.14 -2.38 -0.01 1.27 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.03 1.21 6.47 -2.39 -0.02 1.19 16 30 H 0.06 2.41 6.04 -2.38 -0.01 2.40 16 31 H 0.38 6.93 9.08 -74.05 -0.67 6.26 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 2.07 7.80 -2.39 -0.02 2.05 16 35 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.03 1.39 6.57 -2.39 -0.02 1.38 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -62.53 285.46 0.63 -61.90 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.36 Total: 15.52 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 3.11 Total: -27.58 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -2.98 Total: -77.70 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -1.89 Total: -18.24 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.53 0.63 -61.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307349618.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.230 kcal (2) G-P(sol) polarization free energy of solvation -62.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds