Wall clock time and date at job start Mon Mar 30 2020 03:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47144 * 2 1 4 4 H 1.09005 * 109.47316 * 305.00235 * 3 2 1 5 5 C 1.50694 * 109.47504 * 184.99826 * 3 2 1 6 6 H 1.08007 * 120.00024 * 240.00317 * 5 3 2 7 7 C 1.37879 * 120.00050 * 59.99727 * 5 3 2 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00029 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47085 * 90.00005 * 9 7 5 11 11 H 1.48500 * 109.47127 * 209.99764 * 9 7 5 12 12 H 1.48498 * 109.47101 * 330.00429 * 9 7 5 13 13 N 1.46909 * 109.47391 * 64.99644 * 3 2 1 14 14 C 1.46846 * 110.99624 * 64.04693 * 13 3 2 15 15 C 1.53041 * 109.52245 * 185.84343 * 14 13 3 16 16 C 1.53123 * 109.27600 * 300.81948 * 15 14 13 17 17 C 1.53123 * 109.15751 * 57.65763 * 16 15 14 18 18 H 1.08995 * 109.50795 * 62.28526 * 17 16 15 19 19 O 1.42903 * 109.50241 * 182.36583 * 17 16 15 20 20 C 1.46846 * 111.00120 * 188.26039 * 13 3 2 21 21 H 1.08998 * 109.46015 * 294.17678 * 20 13 3 22 22 C 1.52999 * 109.46394 * 54.14635 * 20 13 3 23 23 H 1.09001 * 109.47811 * 300.00255 * 1 2 3 24 24 H 1.09001 * 109.47117 * 60.00804 * 1 2 3 25 25 H 1.09006 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47466 * 240.00163 * 2 1 3 27 27 H 1.08998 * 109.47016 * 119.99958 * 2 1 3 28 28 H 0.97001 * 119.99998 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46520 * 305.85889 * 14 13 3 30 30 H 1.08999 * 109.46388 * 65.83731 * 14 13 3 31 31 H 1.09000 * 109.50003 * 60.75899 * 15 14 13 32 32 H 1.08994 * 109.50127 * 180.88229 * 15 14 13 33 33 H 1.09004 * 109.52165 * 177.55432 * 16 15 14 34 34 H 1.09000 * 109.52681 * 297.75428 * 16 15 14 35 35 H 0.96709 * 113.99500 * 299.99579 * 19 17 16 36 36 H 1.08999 * 109.47128 * 53.61156 * 22 20 13 37 37 H 1.08995 * 109.46728 * 173.61222 * 22 20 13 38 38 H 1.09003 * 109.47051 * 293.61040 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3518 -0.7596 11 1 6.3836 0.9214 -2.8163 12 1 6.5575 2.0720 -0.6887 13 7 1.6513 2.0993 1.2552 14 6 2.2971 1.4571 2.4071 15 6 1.7592 2.0698 3.7023 16 6 2.0448 3.5741 3.7065 17 6 1.4021 4.2111 2.4713 18 1 0.3211 4.0783 2.5140 19 8 1.7106 5.6060 2.4387 20 6 1.9503 3.5364 1.2118 21 1 3.0295 3.6813 1.1625 22 6 1.2959 4.1561 -0.0246 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0611 -2.9498 29 1 2.0827 0.3884 2.3945 30 1 3.3746 1.6120 2.3524 31 1 0.6838 1.9033 3.7644 32 1 2.2502 1.6038 4.5566 33 1 1.6250 4.0220 4.6073 34 1 3.1217 3.7406 3.6836 35 1 1.3943 6.0968 3.2097 36 1 0.2333 3.9133 -0.0335 37 1 1.4211 5.2385 0.0022 38 1 1.7671 3.7580 -0.9232 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307409339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:36 Heat of formation + Delta-G solvation = -59.773487 kcal Electronic energy + Delta-G solvation = -17391.341035 eV Core-core repulsion = 14847.179855 eV Total energy + Delta-G solvation = -2544.161180 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.05208 -36.25794 -33.85696 -32.12945 -31.49269 -29.66115 -26.64291 -25.92342 -23.66167 -22.42454 -20.81476 -19.64645 -18.79300 -16.95449 -16.05544 -15.22110 -14.54271 -14.39342 -14.21912 -13.48369 -13.31347 -12.89968 -12.73669 -12.23646 -11.97273 -11.59016 -11.31187 -11.18837 -11.11771 -11.03157 -10.82738 -10.57852 -10.30538 -10.28065 -9.97453 -9.69738 -9.61494 -9.38803 -9.30946 -8.94399 -8.30317 -7.09401 -5.96388 -4.09160 3.27887 3.35367 3.38832 4.40125 4.44778 5.12760 5.19743 5.27837 5.34356 5.47624 5.72399 5.92899 6.04083 6.20324 6.21652 6.28725 6.34352 6.38613 6.45358 6.48931 6.64840 6.67492 6.73229 6.84923 6.99191 7.04012 7.13795 7.22699 7.38976 7.65562 7.78712 7.94329 8.03388 8.19448 8.36282 8.51472 9.00643 9.58050 11.02638 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.010314 C = 0.009168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.901027 B = 2714.054622 C = 3053.231361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.212 3.788 4 H 0.049 0.951 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.528 5.528 14 C 0.057 3.943 15 C -0.115 4.115 16 C -0.149 4.149 17 C 0.110 3.890 18 H 0.056 0.944 19 O -0.568 6.568 20 C 0.101 3.899 21 H 0.047 0.953 22 C -0.136 4.136 23 H 0.047 0.953 24 H 0.038 0.962 25 H 0.024 0.976 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.368 0.632 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 4.347 8.712 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.106 3.894 4 H 0.066 0.934 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.254 5.254 14 C -0.071 4.071 15 C -0.153 4.153 16 C -0.187 4.187 17 C 0.051 3.949 18 H 0.074 0.926 19 O -0.372 6.372 20 C -0.009 4.009 21 H 0.065 0.935 22 C -0.194 4.194 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.214 0.786 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.645 4.038 7.998 10.092 hybrid contribution 1.780 0.121 0.378 1.824 sum -2.865 4.159 8.375 9.780 Atomic orbital electron populations 1.21708 0.98888 0.98357 1.00571 1.21627 0.92237 0.99254 1.01922 1.19362 0.93057 0.91013 0.85986 0.93368 1.21737 0.92935 1.37883 1.05425 0.92715 1.24884 0.97671 0.95109 0.95684 1.69868 1.34686 1.38414 1.09437 0.86710 0.86441 0.78340 0.77228 1.20761 1.21203 1.20086 1.62355 1.57687 1.00422 1.04891 1.21951 0.97009 0.98753 0.89404 1.21583 1.01329 0.94257 0.98133 1.22281 1.01492 0.97162 0.97746 1.21908 0.97846 0.79824 0.95325 0.92630 1.86522 1.82769 1.20690 1.47174 1.21145 0.98296 0.89112 0.92299 0.93548 1.21759 1.00205 0.99300 0.98122 0.93400 0.94236 0.95669 0.88942 0.94933 0.92939 0.90901 0.94428 0.91824 0.92390 0.92781 0.91789 0.78602 0.93180 0.93009 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.80 37.16 0.36 -2.42 16 2 C -0.11 -2.62 5.13 -26.74 -0.14 -2.76 16 3 C 0.21 5.12 1.40 -68.87 -0.10 5.02 16 4 H 0.05 1.28 5.89 -51.93 -0.31 0.98 16 5 C -0.54 -14.37 7.21 -34.44 -0.25 -14.62 16 6 H 0.05 1.49 5.84 -52.48 -0.31 1.18 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.88 21.26 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 N -0.53 -10.99 3.91 -220.14 -0.86 -11.85 16 14 C 0.06 1.11 4.79 -3.83 -0.02 1.09 16 15 C -0.11 -1.78 6.09 -26.65 -0.16 -1.94 16 16 C -0.15 -2.21 5.63 -26.60 -0.15 -2.36 16 17 C 0.11 1.80 3.06 -26.65 -0.08 1.72 16 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 19 O -0.57 -8.70 12.58 -35.23 -0.44 -9.15 16 20 C 0.10 2.02 1.88 -67.72 -0.13 1.89 16 21 H 0.05 1.07 7.17 -51.93 -0.37 0.70 16 22 C -0.14 -2.69 8.50 37.16 0.32 -2.37 16 23 H 0.05 0.93 7.75 -51.93 -0.40 0.52 16 24 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 27 H 0.03 0.75 6.15 -51.93 -0.32 0.43 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.07 1.44 6.05 -51.93 -0.31 1.13 16 30 H 0.04 0.80 6.46 -51.93 -0.34 0.47 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.37 3.78 9.08 45.56 0.41 4.19 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.95 7.53 -51.93 -0.39 0.56 16 38 H 0.07 1.47 6.54 -51.93 -0.34 1.13 16 LS Contribution 285.29 15.07 4.30 4.30 Total: -1.00 -28.03 285.29 -7.33 -35.37 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.50 Total: 4.16 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.44 Total: -14.97 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.23 Total: -35.94 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.44 Total: -9.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.03 -7.33 -35.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307409339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.407 kcal (2) G-P(sol) polarization free energy of solvation -28.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds