Wall clock time and date at job start Mon Mar 30 2020 03:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47144 * 2 1 4 4 H 1.09005 * 109.47316 * 305.00235 * 3 2 1 5 5 C 1.50694 * 109.47504 * 184.99826 * 3 2 1 6 6 H 1.08007 * 120.00024 * 240.00317 * 5 3 2 7 7 C 1.37879 * 120.00050 * 59.99727 * 5 3 2 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00029 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47085 * 90.00005 * 9 7 5 11 11 H 1.48500 * 109.47127 * 209.99764 * 9 7 5 12 12 H 1.48498 * 109.47101 * 330.00429 * 9 7 5 13 13 N 1.46909 * 109.47391 * 64.99644 * 3 2 1 14 14 C 1.46846 * 110.99624 * 64.04693 * 13 3 2 15 15 C 1.53041 * 109.52245 * 185.84343 * 14 13 3 16 16 C 1.53123 * 109.27600 * 300.81948 * 15 14 13 17 17 C 1.53123 * 109.15751 * 57.65763 * 16 15 14 18 18 H 1.08995 * 109.50795 * 62.28526 * 17 16 15 19 19 O 1.42903 * 109.50241 * 182.36583 * 17 16 15 20 20 C 1.46846 * 111.00120 * 188.26039 * 13 3 2 21 21 H 1.08998 * 109.46015 * 294.17678 * 20 13 3 22 22 C 1.52999 * 109.46394 * 54.14635 * 20 13 3 23 23 H 1.09001 * 109.47811 * 300.00255 * 1 2 3 24 24 H 1.09001 * 109.47117 * 60.00804 * 1 2 3 25 25 H 1.09006 * 109.47147 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47466 * 240.00163 * 2 1 3 27 27 H 1.08998 * 109.47016 * 119.99958 * 2 1 3 28 28 H 0.97001 * 119.99998 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.46520 * 305.85889 * 14 13 3 30 30 H 1.08999 * 109.46388 * 65.83731 * 14 13 3 31 31 H 1.09000 * 109.50003 * 60.75899 * 15 14 13 32 32 H 1.08994 * 109.50127 * 180.88229 * 15 14 13 33 33 H 1.09004 * 109.52165 * 177.55432 * 16 15 14 34 34 H 1.09000 * 109.52681 * 297.75428 * 16 15 14 35 35 H 0.96709 * 113.99500 * 299.99579 * 19 17 16 36 36 H 1.08999 * 109.47128 * 53.61156 * 22 20 13 37 37 H 1.08995 * 109.46728 * 173.61222 * 22 20 13 38 38 H 1.09003 * 109.47051 * 293.61040 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5539 -0.3518 -0.7596 11 1 6.3836 0.9214 -2.8163 12 1 6.5575 2.0720 -0.6887 13 7 1.6513 2.0993 1.2552 14 6 2.2971 1.4571 2.4071 15 6 1.7592 2.0698 3.7023 16 6 2.0448 3.5741 3.7065 17 6 1.4021 4.2111 2.4713 18 1 0.3211 4.0783 2.5140 19 8 1.7106 5.6060 2.4387 20 6 1.9503 3.5364 1.2118 21 1 3.0295 3.6813 1.1625 22 6 1.2959 4.1561 -0.0246 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8293 -0.0611 -2.9498 29 1 2.0827 0.3884 2.3945 30 1 3.3746 1.6120 2.3524 31 1 0.6838 1.9033 3.7644 32 1 2.2502 1.6038 4.5566 33 1 1.6250 4.0220 4.6073 34 1 3.1217 3.7406 3.6836 35 1 1.3943 6.0968 3.2097 36 1 0.2333 3.9133 -0.0335 37 1 1.4211 5.2385 0.0022 38 1 1.7671 3.7580 -0.9232 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307409339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:36 Heat of formation + Delta-G solvation = -79.319657 kcal Electronic energy + Delta-G solvation = -17392.188620 eV Core-core repulsion = 14847.179855 eV Total energy + Delta-G solvation = -2545.008765 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57302 -37.72600 -35.46856 -33.81295 -33.29409 -31.22350 -28.45741 -27.50258 -25.42685 -24.05883 -22.27316 -21.23374 -20.54074 -18.37057 -17.94864 -16.94831 -16.18589 -16.09355 -15.64571 -15.11972 -14.78317 -14.62099 -14.24951 -13.78153 -13.57921 -13.17170 -13.03855 -13.00435 -12.75027 -12.64656 -12.58975 -12.31432 -12.00058 -11.72584 -11.66764 -11.52454 -11.33438 -11.05331 -10.78990 -10.61659 -10.34209 -8.91992 -8.02524 -6.23902 1.33425 1.35879 1.44115 2.38902 3.06190 3.17010 3.76722 3.92244 3.96650 4.16856 4.33682 4.51614 4.61090 4.64987 4.70227 4.78104 4.86687 4.88396 4.96421 5.04349 5.07437 5.13857 5.22317 5.31551 5.35242 5.36264 5.46204 5.51015 5.54303 5.67095 5.84621 6.11507 6.23757 6.41542 6.71185 6.96448 7.03021 7.46015 8.91891 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.010314 C = 0.009168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.901027 B = 2714.054622 C = 3053.231361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.217 3.783 4 H 0.020 0.980 5 C -0.548 4.548 6 H 0.041 0.959 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.518 5.518 14 C 0.056 3.944 15 C -0.106 4.106 16 C -0.144 4.144 17 C 0.120 3.880 18 H 0.069 0.931 19 O -0.581 6.581 20 C 0.095 3.905 21 H 0.007 0.993 22 C -0.127 4.127 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.008 0.992 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.394 0.606 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 4.883 10.750 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.110 3.890 4 H 0.037 0.963 5 C -0.587 4.587 6 H 0.059 0.941 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.766 3.234 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.243 5.243 14 C -0.073 4.073 15 C -0.144 4.144 16 C -0.181 4.181 17 C 0.061 3.939 18 H 0.087 0.913 19 O -0.389 6.389 20 C -0.014 4.014 21 H 0.025 0.975 22 C -0.184 4.184 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.244 0.756 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.544 4.588 10.064 12.372 hybrid contribution 2.067 0.004 -0.255 2.083 sum -3.477 4.592 9.809 11.375 Atomic orbital electron populations 1.21565 0.96144 0.99794 1.00753 1.21470 0.94637 0.98171 1.00312 1.19132 0.91466 0.91505 0.86882 0.96263 1.21949 0.94436 1.37327 1.05005 0.94092 1.25528 1.01338 0.95129 0.95619 1.69983 1.35969 1.39045 1.09752 0.85846 0.82123 0.78196 0.77206 1.20092 1.20729 1.20405 1.62345 1.57172 1.00867 1.03959 1.22017 0.95452 0.98783 0.90999 1.21537 1.02145 0.94606 0.96123 1.22254 1.00643 0.96684 0.98566 1.21663 0.98248 0.80364 0.93612 0.91262 1.86463 1.83159 1.20161 1.49121 1.21212 0.96210 0.89067 0.94875 0.97513 1.21651 1.00339 0.99796 0.96664 0.92216 0.94917 0.93606 0.92035 0.94956 0.92963 0.91566 0.97331 0.90382 0.90079 0.88727 0.93374 0.75649 0.92129 0.91812 0.94862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.80 71.98 0.71 -4.23 16 2 C -0.11 -5.10 5.13 30.59 0.16 -4.94 16 3 C 0.22 10.80 1.40 44.16 0.06 10.86 16 4 H 0.02 1.08 5.89 -2.38 -0.01 1.07 16 5 C -0.55 -30.19 7.21 25.60 0.18 -30.00 16 6 H 0.04 2.33 5.84 -2.91 -0.02 2.31 16 7 C 0.02 1.32 5.29 84.66 0.45 1.77 16 8 N -0.91 -52.15 11.29 21.45 0.24 -51.90 16 9 Si 0.94 44.60 29.54 68.60 2.03 46.62 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.52 -21.59 3.91 -850.38 -3.32 -24.91 16 14 C 0.06 2.13 4.79 86.33 0.41 2.55 16 15 C -0.11 -2.96 6.09 30.65 0.19 -2.77 16 16 C -0.14 -3.78 5.63 30.68 0.17 -3.61 16 17 C 0.12 3.64 3.06 30.65 0.09 3.74 16 18 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 19 O -0.58 -16.24 12.58 -148.98 -1.87 -18.12 16 20 C 0.10 3.84 1.88 44.94 0.08 3.92 16 21 H 0.01 0.33 7.17 -2.39 -0.02 0.31 16 22 C -0.13 -5.05 8.50 71.98 0.61 -4.44 16 23 H 0.06 2.20 7.75 -2.39 -0.02 2.18 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.06 3.32 5.95 -2.39 -0.01 3.30 16 27 H 0.03 1.49 6.15 -2.39 -0.01 1.48 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.07 2.59 6.05 -2.39 -0.01 2.57 16 30 H 0.01 0.37 6.46 -2.39 -0.02 0.35 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.39 6.54 9.08 -74.05 -0.67 5.87 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 2.33 7.53 -2.39 -0.02 2.31 16 38 H 0.03 1.51 6.54 -2.39 -0.02 1.49 16 Total: -1.00 -62.06 285.29 0.56 -61.51 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.36 Total: 13.96 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 3.12 Total: -27.16 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.08 Total: -76.81 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.87 Total: -18.12 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -62.06 0.56 -61.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307409339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.812 kcal (2) G-P(sol) polarization free energy of solvation -62.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds