Wall clock time and date at job start Mon Mar 30 2020 03:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 H 1.09008 * 109.46712 * 305.30099 * 3 2 1 5 5 C 1.50701 * 109.46948 * 185.30560 * 3 2 1 6 6 H 1.08001 * 119.99393 * 245.28832 * 5 3 2 7 7 C 1.37871 * 120.00266 * 65.29293 * 5 3 2 8 8 N 1.31516 * 120.00008 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00102 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46714 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.46919 * 119.99457 * 9 7 5 12 12 H 1.48497 * 109.46960 * 239.99747 * 9 7 5 13 13 N 1.46898 * 109.46969 * 65.30189 * 3 2 1 14 14 C 1.46853 * 110.99593 * 208.86625 * 13 3 2 15 15 C 1.53036 * 109.52078 * 174.16444 * 14 13 3 16 16 C 1.53119 * 109.31357 * 59.15577 * 15 14 13 17 17 C 1.53118 * 109.15780 * 302.40835 * 16 15 14 18 18 H 1.09002 * 109.50633 * 297.63103 * 17 16 15 19 19 O 1.42907 * 109.50353 * 177.55381 * 17 16 15 20 20 C 1.46847 * 110.99894 * 84.66129 * 13 3 2 21 21 H 1.08995 * 109.46503 * 65.81750 * 20 13 3 22 22 C 1.52997 * 109.44885 * 305.84654 * 20 13 3 23 23 H 1.09006 * 109.47213 * 64.77469 * 1 2 3 24 24 H 1.09000 * 109.47153 * 184.76994 * 1 2 3 25 25 H 1.08996 * 109.47273 * 304.77034 * 1 2 3 26 26 H 1.08997 * 109.47057 * 240.00549 * 2 1 3 27 27 H 1.08999 * 109.47439 * 120.00032 * 2 1 3 28 28 H 0.96999 * 119.99588 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.46118 * 294.17738 * 14 13 3 30 30 H 1.08993 * 109.46296 * 54.14889 * 14 13 3 31 31 H 1.08996 * 109.50488 * 179.12571 * 15 14 13 32 32 H 1.09001 * 109.50084 * 299.19648 * 15 14 13 33 33 H 1.08999 * 109.56024 * 182.48440 * 16 15 14 34 34 H 1.08996 * 109.49034 * 62.28929 * 16 15 14 35 35 H 0.96703 * 113.99884 * 60.07323 * 19 17 16 36 36 H 1.08999 * 109.47471 * 308.47191 * 22 20 13 37 37 H 1.08998 * 109.47494 * 68.47749 * 22 20 13 38 38 H 1.09008 * 109.47018 * 188.47701 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6011 1.9831 -0.8388 5 6 3.5412 1.4446 -0.1314 6 1 4.1537 1.8100 0.6797 7 6 4.1328 0.9802 -1.2869 8 7 3.3869 0.5348 -2.2743 9 14 5.9938 0.9820 -1.4494 10 1 6.5984 1.5286 -0.2081 11 1 6.4732 -0.4069 -1.6642 12 1 6.3888 1.8265 -2.6053 13 7 1.6576 2.0971 1.2583 14 6 1.4886 3.5435 1.0688 15 6 0.9514 4.1688 2.3582 16 6 1.9336 3.8961 3.5008 17 6 2.1299 2.3843 3.6446 18 1 1.1803 1.9173 3.9062 19 8 3.0888 2.1232 4.6714 20 6 2.6329 1.8107 2.3180 21 1 3.5895 2.2675 2.0643 22 6 2.8103 0.2970 2.4516 23 1 -0.3634 0.4380 -0.9297 24 1 -0.3633 -1.0241 0.0855 25 1 -0.3633 0.5860 0.8441 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8032 0.2077 -3.0871 29 1 2.4505 3.9921 0.8210 30 1 0.7840 3.7236 0.2570 31 1 0.8408 5.2446 2.2223 32 1 -0.0173 3.7310 2.5988 33 1 1.5339 4.3015 4.4302 34 1 2.8906 4.3680 3.2781 35 1 2.8353 2.4609 5.5414 36 1 1.8336 -0.1756 2.5552 37 1 3.3089 -0.0903 1.5631 38 1 3.4149 0.0783 3.3319 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307409340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:38 Heat of formation + Delta-G solvation = -65.118515 kcal Electronic energy + Delta-G solvation = -17514.603900 eV Core-core repulsion = 14970.210943 eV Total energy + Delta-G solvation = -2544.392957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68970 -37.68743 -35.65544 -33.89800 -32.62867 -31.68549 -28.48514 -27.65100 -25.36415 -23.60047 -22.41612 -21.33273 -20.70272 -18.41817 -17.99464 -16.93514 -16.34334 -15.77069 -15.47132 -15.21443 -14.74081 -14.58199 -14.13550 -13.81171 -13.49250 -13.26772 -13.07460 -12.89733 -12.81247 -12.72158 -12.47106 -12.27144 -11.90921 -11.70250 -11.60360 -11.44338 -11.28731 -10.98795 -10.70921 -10.53987 -10.23978 -8.88086 -8.04821 -6.21293 1.33323 1.37238 1.46652 2.40029 3.08764 3.17452 3.77689 3.93456 4.00943 4.15778 4.34994 4.54716 4.65432 4.68003 4.77027 4.81856 4.87106 4.94589 4.95915 5.05475 5.07982 5.12701 5.24859 5.25783 5.35604 5.46718 5.50760 5.60682 5.62090 5.74912 5.88663 6.11054 6.20485 6.41685 6.74181 6.99375 7.04309 7.47772 8.93997 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024546 B = 0.010780 C = 0.009491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.448425 B = 2596.721712 C = 2949.472872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.223 3.777 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.938 3.062 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.521 5.521 14 C 0.053 3.947 15 C -0.103 4.103 16 C -0.144 4.144 17 C 0.116 3.884 18 H 0.066 0.934 19 O -0.581 6.581 20 C 0.101 3.899 21 H 0.017 0.983 22 C -0.134 4.134 23 H 0.026 0.974 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.260 0.740 29 H 0.006 0.994 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.393 0.607 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 4.457 11.360 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.199 1.199 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.246 5.246 14 C -0.076 4.076 15 C -0.141 4.141 16 C -0.182 4.182 17 C 0.057 3.943 18 H 0.084 0.916 19 O -0.389 6.389 20 C -0.008 4.008 21 H 0.035 0.965 22 C -0.191 4.191 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.983 3.914 10.841 12.557 hybrid contribution 1.742 0.527 -0.704 1.951 sum -3.241 4.441 10.137 11.532 Atomic orbital electron populations 1.21584 0.96692 0.99937 1.00283 1.21890 0.94474 0.98317 1.01183 1.19008 0.92003 0.91893 0.85467 0.98182 1.22117 0.94125 1.41399 1.00772 0.92531 1.25562 1.01206 0.95271 0.95736 1.70053 1.35967 1.43142 1.05964 0.85806 0.82225 0.77717 0.77721 1.19919 1.20534 1.20866 1.62319 1.45575 1.09109 1.07597 1.22069 0.98212 0.88811 0.98473 1.21491 0.99064 1.00658 0.92849 1.22252 0.99663 0.96062 1.00189 1.21739 0.91013 0.94367 0.87224 0.91572 1.86474 1.48349 1.82642 1.21410 1.21199 0.93143 0.96300 0.90156 0.96523 1.22011 1.00983 0.95142 1.00974 0.95466 0.93597 0.92132 0.93781 0.91545 0.93123 0.97593 0.92047 0.89828 0.90376 0.88781 0.93214 0.75796 0.92244 0.92271 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.86 71.98 0.71 -4.38 16 2 C -0.12 -5.70 4.97 30.60 0.15 -5.54 16 3 C 0.22 11.12 1.54 44.17 0.07 11.18 16 4 H 0.00 0.01 7.65 -2.38 -0.02 -0.01 16 5 C -0.55 -29.67 6.31 25.60 0.16 -29.51 16 6 H 0.06 3.15 5.11 -2.91 -0.01 3.14 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -52.78 11.71 21.45 0.25 -52.53 16 9 Si 0.94 44.59 29.54 68.60 2.03 46.62 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.52 -21.59 3.79 -850.39 -3.22 -24.81 16 14 C 0.05 1.98 5.32 86.32 0.46 2.44 16 15 C -0.10 -2.78 6.09 30.65 0.19 -2.59 16 16 C -0.14 -3.74 5.63 30.67 0.17 -3.57 16 17 C 0.12 3.53 3.05 30.64 0.09 3.63 16 18 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 19 O -0.58 -16.57 12.55 -148.98 -1.87 -18.44 16 20 C 0.10 4.04 1.55 44.94 0.07 4.11 16 21 H 0.02 0.80 5.91 -2.39 -0.01 0.79 16 22 C -0.13 -5.41 7.26 71.98 0.52 -4.89 16 23 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 2.27 7.64 -2.39 -0.02 2.25 16 26 H 0.04 2.37 6.40 -2.39 -0.02 2.36 16 27 H 0.07 3.03 3.73 -2.39 -0.01 3.02 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 2.31 7.90 -2.39 -0.02 2.29 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.39 6.74 9.08 -74.06 -0.67 6.07 16 36 H 0.06 2.25 7.09 -2.39 -0.02 2.24 16 37 H 0.06 2.75 4.81 -2.39 -0.01 2.74 16 38 H 0.05 1.94 7.47 -2.38 -0.02 1.92 16 Total: -1.00 -62.12 282.02 0.60 -61.52 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.37 Total: 15.08 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 3.04 Total: -27.45 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.97 Total: -77.33 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.87 Total: -18.44 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -62.12 0.60 -61.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307409340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.599 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds