Wall clock time and date at job start Mon Mar 30 2020 03:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46702 * 2 1 4 4 H 1.08998 * 109.47322 * 55.55994 * 3 2 1 5 5 C 1.50709 * 109.46722 * 175.55434 * 3 2 1 6 6 H 1.08002 * 119.99783 * 120.02435 * 5 3 2 7 7 C 1.37882 * 119.99983 * 300.02440 * 5 3 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99796 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47362 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47091 * 119.99798 * 9 7 5 12 12 H 1.48499 * 109.47218 * 240.00037 * 9 7 5 13 13 N 1.46892 * 109.47630 * 295.55080 * 3 2 1 14 14 C 1.46901 * 110.99963 * 86.71965 * 13 3 2 15 15 C 1.53002 * 109.46981 * 72.30676 * 14 13 3 16 16 C 1.46903 * 111.00177 * 322.76906 * 13 3 2 17 17 H 1.08998 * 110.74858 * 56.32097 * 16 13 3 18 18 C 1.55303 * 111.02253 * 179.91425 * 16 13 3 19 19 C 1.54956 * 100.93919 * 152.40199 * 18 16 13 20 20 O 1.43647 * 105.13491 * 323.55718 * 19 18 16 21 21 C 1.43239 * 109.97101 * 24.42598 * 20 19 18 22 22 H 1.08997 * 109.46655 * 310.07245 * 1 2 3 23 23 H 1.08995 * 109.47207 * 70.07622 * 1 2 3 24 24 H 1.08995 * 109.46810 * 190.07628 * 1 2 3 25 25 H 1.08991 * 109.46684 * 240.00164 * 2 1 3 26 26 H 1.08996 * 109.46580 * 120.00117 * 2 1 3 27 27 H 0.97001 * 119.99707 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47627 * 192.30555 * 14 13 3 29 29 H 1.09003 * 109.47186 * 312.30725 * 14 13 3 30 30 H 1.09002 * 109.47120 * 294.63532 * 15 14 13 31 31 H 1.09002 * 109.47429 * 54.63736 * 15 14 13 32 32 H 1.09003 * 109.46958 * 174.63652 * 15 14 13 33 33 H 1.09001 * 111.12724 * 270.31958 * 18 16 13 34 34 H 1.09002 * 111.12614 * 34.48869 * 18 16 13 35 35 H 1.09001 * 110.30950 * 204.63835 * 19 18 16 36 36 H 1.08998 * 110.39028 * 82.51499 * 19 18 16 37 37 H 1.08994 * 109.82952 * 238.77402 * 21 20 19 38 38 H 1.08998 * 109.90056 * 117.84569 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6131 1.9787 0.8475 5 6 3.5430 1.4439 0.1101 6 1 4.1412 1.8914 -0.6699 7 6 4.1545 0.8740 1.2067 8 7 3.4260 0.3287 2.1562 9 14 6.0174 0.8751 1.3428 10 1 6.6004 1.5436 0.1518 11 1 6.4237 1.6064 2.5698 12 1 6.5094 -0.5241 1.4147 13 7 1.6400 2.1033 -1.2494 14 6 0.2967 2.6858 -1.1303 15 6 0.3546 3.9210 -0.2292 16 6 1.7114 1.1724 -2.3836 17 1 1.1002 0.2893 -2.1974 18 6 1.2865 1.8700 -3.7045 19 6 2.0868 1.0446 -4.7435 20 8 3.3354 0.7421 -4.1008 21 6 3.1741 0.7762 -2.6780 22 1 -0.3632 0.6616 0.7864 23 1 -0.3633 0.3502 -0.9661 24 1 -0.3633 -1.0118 0.1798 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8562 -0.0719 2.9279 28 1 -0.0637 2.9733 -2.1180 29 1 -0.3809 1.9507 -0.6960 30 1 0.6230 3.6198 0.7834 31 1 1.1025 4.6154 -0.6120 32 1 -0.6206 4.4078 -0.2169 33 1 0.2134 1.7763 -3.8708 34 1 1.5937 2.9158 -3.7129 35 1 2.2579 1.6341 -5.6442 36 1 1.5552 0.1253 -4.9891 37 1 3.8509 1.5137 -2.2467 38 1 3.3826 -0.2075 -2.2573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308480781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:27 Heat of formation + Delta-G solvation = -31.837453 kcal Electronic energy + Delta-G solvation = -17501.929651 eV Core-core repulsion = 14958.979869 eV Total energy + Delta-G solvation = -2542.949782 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.42704 -36.99052 -33.10206 -31.22553 -31.13760 -29.49111 -27.43702 -26.42675 -23.34809 -21.87395 -21.15196 -20.68894 -18.60931 -16.90610 -16.09826 -15.50494 -14.89518 -14.25773 -14.11715 -13.93025 -13.47635 -12.90586 -12.65854 -12.44598 -12.08063 -11.81813 -11.38030 -11.21601 -10.94495 -10.89335 -10.77320 -10.69532 -10.65117 -10.32850 -10.24455 -10.02759 -9.69974 -9.46187 -9.01815 -8.64374 -8.32801 -7.10209 -6.00324 -4.03324 3.31479 3.40107 3.45466 4.37907 4.46734 4.85507 5.05851 5.29891 5.42522 5.48023 5.70544 5.81388 5.87273 5.96955 6.00868 6.05626 6.09223 6.14116 6.20244 6.34634 6.38897 6.44023 6.57506 6.64224 6.75213 6.86336 6.93733 6.95742 7.23625 7.41074 7.59692 7.70556 7.89904 8.21538 8.37525 8.57022 9.03406 9.61652 11.05858 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.011738 C = 0.009318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.157451 B = 2384.918578 C = 3004.260551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C 0.213 3.787 4 H 0.042 0.958 5 C -0.496 4.496 6 H 0.069 0.931 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.518 5.518 14 C 0.032 3.968 15 C -0.142 4.142 16 C 0.059 3.941 17 H 0.057 0.943 18 C -0.154 4.154 19 C 0.054 3.946 20 O -0.396 6.396 21 C 0.060 3.940 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.033 0.967 25 H 0.041 0.959 26 H 0.100 0.900 27 H 0.259 0.741 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 1.780 -7.577 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.107 3.893 4 H 0.060 0.940 5 C -0.534 4.534 6 H 0.087 0.913 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.243 5.243 14 C -0.096 4.096 15 C -0.199 4.199 16 C -0.051 4.051 17 H 0.074 0.926 18 C -0.192 4.192 19 C -0.023 4.023 20 O -0.316 6.316 21 C -0.015 4.015 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.519 2.032 -7.587 9.600 hybrid contribution 0.103 -0.753 0.546 0.936 sum -5.415 1.279 -7.041 8.974 Atomic orbital electron populations 1.22127 0.99671 0.99538 0.99656 1.22305 0.91555 1.02441 1.03229 1.19415 0.95572 0.88587 0.85697 0.94018 1.21331 0.90850 1.35961 1.05299 0.91331 1.24930 0.98058 0.95544 0.95761 1.69879 1.34720 1.39045 1.09736 0.86541 0.85898 0.77584 0.78063 1.19578 1.21192 1.21222 1.62464 1.22982 1.33718 1.05176 1.22378 0.91681 0.96705 0.98819 1.21729 0.99963 0.97710 1.00520 1.23043 0.96456 0.94722 0.90839 0.92565 1.23368 0.99615 1.01065 0.95137 1.23188 0.85690 0.97562 0.95892 1.88370 1.31056 1.92144 1.20020 1.23533 0.97036 1.02349 0.78601 0.93468 0.94133 0.94801 0.93996 0.88223 0.93128 0.92659 0.93837 0.92362 0.92381 0.93861 0.91221 0.89844 0.90691 0.93190 0.88220 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.04 37.16 0.30 -2.62 16 2 C -0.16 -3.53 4.68 -26.73 -0.13 -3.66 16 3 C 0.21 5.02 1.73 -68.87 -0.12 4.90 16 4 H 0.04 1.09 6.27 -51.93 -0.33 0.76 16 5 C -0.50 -12.92 7.33 -34.43 -0.25 -13.17 16 6 H 0.07 1.82 5.57 -52.49 -0.29 1.52 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.45 16 8 N -0.89 -24.69 11.29 55.43 0.63 -24.06 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.52 -10.50 4.20 -217.79 -0.91 -11.42 16 14 C 0.03 0.56 5.09 -3.82 -0.02 0.54 16 15 C -0.14 -2.37 9.90 37.16 0.37 -2.00 16 16 C 0.06 1.10 1.77 -65.77 -0.12 0.98 16 17 H 0.06 1.08 4.75 -51.93 -0.25 0.83 16 18 C -0.15 -2.37 5.21 -24.48 -0.13 -2.49 16 19 C 0.05 0.81 7.78 38.19 0.30 1.11 16 20 O -0.40 -7.61 11.36 -35.23 -0.40 -8.01 16 21 C 0.06 1.24 5.85 37.88 0.22 1.46 16 22 H 0.05 0.91 7.68 -51.93 -0.40 0.51 16 23 H 0.04 0.71 4.96 -51.93 -0.26 0.46 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.04 0.94 4.96 -51.93 -0.26 0.68 16 26 H 0.10 2.57 5.96 -51.93 -0.31 2.26 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.05 0.86 6.34 -51.93 -0.33 0.53 16 29 H 0.04 0.77 4.13 -51.93 -0.21 0.55 16 30 H 0.06 1.08 6.73 -51.93 -0.35 0.73 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 2.26 5.44 -51.93 -0.28 1.98 16 38 H 0.07 1.42 7.25 -51.93 -0.38 1.05 16 LS Contribution 275.43 15.07 4.15 4.15 Total: -1.00 -27.02 275.43 -6.95 -33.96 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.72 Total: 2.78 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 0.33 Total: -13.51 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: -0.29 Total: -35.48 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.40 Total: -8.01 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.02 -6.95 -33.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308480781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.127 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds