Wall clock time and date at job start Mon Mar 30 2020 03:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46702 * 2 1 4 4 H 1.08998 * 109.47322 * 55.55994 * 3 2 1 5 5 C 1.50709 * 109.46722 * 175.55434 * 3 2 1 6 6 H 1.08002 * 119.99783 * 120.02435 * 5 3 2 7 7 C 1.37882 * 119.99983 * 300.02440 * 5 3 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99796 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47362 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47091 * 119.99798 * 9 7 5 12 12 H 1.48499 * 109.47218 * 240.00037 * 9 7 5 13 13 N 1.46892 * 109.47630 * 295.55080 * 3 2 1 14 14 C 1.46901 * 110.99963 * 86.71965 * 13 3 2 15 15 C 1.53002 * 109.46981 * 72.30676 * 14 13 3 16 16 C 1.46903 * 111.00177 * 322.76906 * 13 3 2 17 17 H 1.08998 * 110.74858 * 56.32097 * 16 13 3 18 18 C 1.55303 * 111.02253 * 179.91425 * 16 13 3 19 19 C 1.54956 * 100.93919 * 152.40199 * 18 16 13 20 20 O 1.43647 * 105.13491 * 323.55718 * 19 18 16 21 21 C 1.43239 * 109.97101 * 24.42598 * 20 19 18 22 22 H 1.08997 * 109.46655 * 310.07245 * 1 2 3 23 23 H 1.08995 * 109.47207 * 70.07622 * 1 2 3 24 24 H 1.08995 * 109.46810 * 190.07628 * 1 2 3 25 25 H 1.08991 * 109.46684 * 240.00164 * 2 1 3 26 26 H 1.08996 * 109.46580 * 120.00117 * 2 1 3 27 27 H 0.97001 * 119.99707 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47627 * 192.30555 * 14 13 3 29 29 H 1.09003 * 109.47186 * 312.30725 * 14 13 3 30 30 H 1.09002 * 109.47120 * 294.63532 * 15 14 13 31 31 H 1.09002 * 109.47429 * 54.63736 * 15 14 13 32 32 H 1.09003 * 109.46958 * 174.63652 * 15 14 13 33 33 H 1.09001 * 111.12724 * 270.31958 * 18 16 13 34 34 H 1.09002 * 111.12614 * 34.48869 * 18 16 13 35 35 H 1.09001 * 110.30950 * 204.63835 * 19 18 16 36 36 H 1.08998 * 110.39028 * 82.51499 * 19 18 16 37 37 H 1.08994 * 109.82952 * 238.77402 * 21 20 19 38 38 H 1.08998 * 109.90056 * 117.84569 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6131 1.9787 0.8475 5 6 3.5430 1.4439 0.1101 6 1 4.1412 1.8914 -0.6699 7 6 4.1545 0.8740 1.2067 8 7 3.4260 0.3287 2.1562 9 14 6.0174 0.8751 1.3428 10 1 6.6004 1.5436 0.1518 11 1 6.4237 1.6064 2.5698 12 1 6.5094 -0.5241 1.4147 13 7 1.6400 2.1033 -1.2494 14 6 0.2967 2.6858 -1.1303 15 6 0.3546 3.9210 -0.2292 16 6 1.7114 1.1724 -2.3836 17 1 1.1002 0.2893 -2.1974 18 6 1.2865 1.8700 -3.7045 19 6 2.0868 1.0446 -4.7435 20 8 3.3354 0.7421 -4.1008 21 6 3.1741 0.7762 -2.6780 22 1 -0.3632 0.6616 0.7864 23 1 -0.3633 0.3502 -0.9661 24 1 -0.3633 -1.0118 0.1798 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8562 -0.0719 2.9279 28 1 -0.0637 2.9733 -2.1180 29 1 -0.3809 1.9507 -0.6960 30 1 0.6230 3.6198 0.7834 31 1 1.1025 4.6154 -0.6120 32 1 -0.6206 4.4078 -0.2169 33 1 0.2134 1.7763 -3.8708 34 1 1.5937 2.9158 -3.7129 35 1 2.2579 1.6341 -5.6442 36 1 1.5552 0.1253 -4.9891 37 1 3.8509 1.5137 -2.2467 38 1 3.3826 -0.2075 -2.2573 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308480781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:27 Heat of formation + Delta-G solvation = -49.371251 kcal Electronic energy + Delta-G solvation = -17502.689974 eV Core-core repulsion = 14958.979869 eV Total energy + Delta-G solvation = -2543.710105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93975 -38.54418 -34.96664 -32.96962 -32.53162 -30.97158 -29.07086 -28.11470 -25.14695 -23.25565 -22.67816 -22.23267 -20.24310 -18.74971 -17.57962 -17.06667 -16.69849 -15.85315 -15.73779 -15.46314 -14.98870 -14.44012 -14.31158 -14.00855 -13.59653 -13.30788 -13.12482 -12.78674 -12.65846 -12.59987 -12.33484 -12.21680 -12.12244 -12.02136 -11.69950 -11.67032 -11.42512 -11.12430 -10.80276 -10.35761 -10.26372 -8.70946 -8.05145 -6.12910 1.39414 1.43415 1.53693 2.44873 3.00940 3.23041 3.41135 3.68534 4.13045 4.20550 4.32392 4.38964 4.45633 4.48818 4.53923 4.62383 4.65724 4.83691 4.86556 4.91705 4.97090 5.02450 5.06608 5.16300 5.22730 5.25349 5.29450 5.46684 5.51657 5.63213 5.83542 5.90458 6.15889 6.38041 6.61711 6.80705 7.00901 7.55152 8.99489 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021714 B = 0.011738 C = 0.009318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.157451 B = 2384.918578 C = 3004.260551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.149 4.149 3 C 0.222 3.778 4 H 0.013 0.987 5 C -0.502 4.502 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.528 5.528 14 C 0.030 3.970 15 C -0.137 4.137 16 C 0.057 3.943 17 H 0.056 0.944 18 C -0.141 4.141 19 C 0.047 3.953 20 O -0.414 6.414 21 C 0.068 3.932 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.258 0.742 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 2.252 -9.403 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.189 4.189 3 C 0.115 3.885 4 H 0.031 0.969 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.253 5.253 14 C -0.097 4.097 15 C -0.195 4.195 16 C -0.052 4.052 17 H 0.074 0.926 18 C -0.179 4.179 19 C -0.029 4.029 20 O -0.334 6.334 21 C -0.008 4.008 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.924 2.514 -9.431 11.967 hybrid contribution 0.526 -0.876 1.044 1.461 sum -6.398 1.639 -8.387 10.676 Atomic orbital electron populations 1.21990 0.96697 1.00494 1.00663 1.22113 0.94188 1.01280 1.01288 1.19101 0.93957 0.88974 0.86471 0.96949 1.21618 0.92588 1.35108 1.04750 0.92299 1.25552 1.01396 0.95696 0.95805 1.70000 1.35862 1.39945 1.10116 0.85728 0.82020 0.77418 0.77831 1.19528 1.20968 1.21087 1.62347 1.25174 1.33714 1.04100 1.22499 0.90024 0.96666 1.00548 1.21695 1.01578 0.97556 0.98639 1.23054 0.95243 0.94978 0.91938 0.92640 1.23333 1.01550 1.00454 0.92554 1.23514 0.84178 0.98908 0.96307 1.88342 1.33617 1.92338 1.19099 1.23216 0.97863 1.00200 0.79539 0.93931 0.92023 0.93402 0.94273 0.91738 0.93322 0.89754 0.93632 0.95174 0.93047 0.90559 0.88026 0.90057 0.88022 0.91349 0.91123 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 8.04 71.99 0.58 -4.64 16 2 C -0.15 -6.82 4.68 30.60 0.14 -6.67 16 3 C 0.22 10.62 1.73 44.17 0.08 10.70 16 4 H 0.01 0.68 6.27 -2.39 -0.01 0.66 16 5 C -0.50 -26.90 7.33 25.60 0.19 -26.72 16 6 H 0.06 3.22 5.57 -2.91 -0.02 3.21 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -52.21 11.29 21.45 0.24 -51.97 16 9 Si 0.94 44.35 29.54 68.60 2.03 46.37 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.53 -20.97 4.20 -842.96 -3.54 -24.51 16 14 C 0.03 0.97 5.09 86.30 0.44 1.41 16 15 C -0.14 -4.38 9.90 71.98 0.71 -3.67 16 16 C 0.06 2.04 1.77 46.17 0.08 2.12 16 17 H 0.06 2.01 4.75 -2.39 -0.01 2.00 16 18 C -0.14 -3.82 5.21 32.05 0.17 -3.65 16 19 C 0.05 1.26 7.78 72.65 0.57 1.83 16 20 O -0.41 -15.36 11.36 -148.98 -1.69 -17.05 16 21 C 0.07 2.79 5.85 72.45 0.42 3.21 16 22 H 0.04 1.59 7.68 -2.39 -0.02 1.57 16 23 H 0.06 2.00 4.96 -2.39 -0.01 1.99 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.77 4.96 -2.39 -0.01 1.76 16 26 H 0.06 3.42 5.96 -2.39 -0.01 3.41 16 27 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.08 2.27 6.34 -2.38 -0.02 2.25 16 29 H 0.05 1.48 4.13 -2.39 -0.01 1.47 16 30 H 0.03 1.11 6.73 -2.39 -0.02 1.09 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.10 2.14 7.84 -2.39 -0.02 2.12 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 3.29 5.44 -2.39 -0.01 3.28 16 38 H 0.04 1.99 7.25 -2.39 -0.02 1.97 16 Total: -1.00 -59.53 275.43 1.91 -57.63 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.04 Total: 14.42 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.82 Total: -24.89 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -3.30 Total: -76.48 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.69 Total: -17.05 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -59.53 1.91 -57.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308480781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.257 kcal (2) G-P(sol) polarization free energy of solvation -59.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds