Wall clock time and date at job start Mon Mar 30 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47246 * 2 1 4 4 H 1.08996 * 109.46977 * 302.95165 * 3 2 1 5 5 C 1.50704 * 109.47101 * 182.95106 * 3 2 1 6 6 H 1.07997 * 119.99989 * 243.70025 * 5 3 2 7 7 C 1.37877 * 119.99458 * 63.70412 * 5 3 2 8 8 N 1.31510 * 120.00514 * 6.55076 * 7 5 3 9 9 Si 1.86800 * 119.99779 * 186.54897 * 7 5 3 10 10 H 1.48496 * 109.47224 * 59.99966 * 9 7 5 11 11 H 1.48498 * 109.47117 * 299.99992 * 9 7 5 12 12 H 1.48496 * 109.47449 * 180.02562 * 9 7 5 13 13 N 1.46897 * 109.46808 * 62.95576 * 3 2 1 14 14 C 1.48557 * 111.00530 * 31.89563 * 13 3 2 15 15 C 1.54372 * 104.59916 * 200.96013 * 14 13 3 16 16 C 1.54262 * 105.05857 * 23.85002 * 15 14 13 17 17 C 1.48563 * 111.00109 * 276.47549 * 13 3 2 18 18 H 1.08996 * 110.40866 * 40.26155 * 17 13 3 19 19 C 1.53005 * 110.41087 * 277.82141 * 17 13 3 20 20 C 1.53003 * 109.46969 * 62.88873 * 19 17 13 21 21 O 1.42903 * 109.46965 * 173.80066 * 20 19 17 22 22 H 1.08998 * 109.47047 * 50.52162 * 1 2 3 23 23 H 1.09003 * 109.47297 * 170.51714 * 1 2 3 24 24 H 1.08997 * 109.47433 * 290.51884 * 1 2 3 25 25 H 1.08997 * 109.47267 * 239.99899 * 2 1 3 26 26 H 1.09007 * 109.46960 * 120.00024 * 2 1 3 27 27 H 0.97006 * 119.99873 * 5.74914 * 8 7 5 28 28 H 1.09003 * 110.41112 * 319.73933 * 14 13 3 29 29 H 1.09004 * 110.41405 * 82.17969 * 14 13 3 30 30 H 1.08996 * 110.32644 * 264.95766 * 15 14 13 31 31 H 1.09000 * 110.41151 * 142.79095 * 15 14 13 32 32 H 1.08999 * 110.32427 * 241.10545 * 16 15 14 33 33 H 1.08998 * 110.40924 * 118.94474 * 16 15 14 34 34 H 1.08991 * 109.46793 * 182.88924 * 19 17 13 35 35 H 1.09004 * 109.47127 * 302.89189 * 19 17 13 36 36 H 1.09001 * 109.47180 * 293.79795 * 20 19 17 37 37 H 1.08998 * 109.47113 * 53.80237 * 20 19 17 38 38 H 0.96699 * 113.99592 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6341 1.9714 -0.8623 5 6 3.5452 1.4431 -0.0731 6 1 4.1254 1.8433 0.7451 7 6 4.1815 0.9328 -1.1848 8 7 3.4788 0.5647 -2.2337 9 14 6.0418 0.7644 -1.2011 10 1 6.4670 -0.1359 -0.0995 11 1 6.6615 2.1011 -1.0150 12 1 6.4760 0.1950 -2.5020 13 7 1.6095 2.1140 1.2335 14 6 1.5304 1.1527 2.3634 15 6 0.5902 1.8286 3.3843 16 6 -0.2687 2.8041 2.5535 17 6 0.2247 2.6354 1.1005 18 1 -0.4012 1.9201 0.5670 19 6 0.2296 3.9844 0.3786 20 6 0.7671 3.8007 -1.0421 21 8 0.6375 5.0278 -1.7628 22 1 -0.3633 0.6534 -0.7932 23 1 -0.3634 -1.0136 -0.1693 24 1 -0.3634 0.3602 0.9624 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.5230 0.7286 -2.2590 28 1 1.1089 0.2052 2.0276 29 1 2.5170 0.9973 2.8001 30 1 1.1695 2.3744 4.1290 31 1 -0.0427 1.0850 3.8685 32 1 -0.1110 3.8286 2.8903 33 1 -1.3236 2.5399 2.6281 34 1 -0.7864 4.3766 0.3348 35 1 0.8662 4.6841 0.9202 36 1 1.8178 3.5140 -0.9988 37 1 0.1981 3.0205 -1.5477 38 1 0.9590 4.9847 -2.6738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308595126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:28 Heat of formation + Delta-G solvation = -35.185553 kcal Electronic energy + Delta-G solvation = -17467.399989 eV Core-core repulsion = 14924.305022 eV Total energy + Delta-G solvation = -2543.094967 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51161 -36.28476 -34.52292 -31.82235 -31.62884 -29.68434 -26.65348 -26.10283 -23.29212 -22.58233 -20.74914 -19.61763 -19.19673 -16.99606 -16.84939 -15.54998 -14.96055 -14.58811 -13.81095 -13.68838 -13.47081 -13.43337 -13.09889 -12.10009 -12.05479 -11.64188 -11.53956 -11.13706 -10.97164 -10.87927 -10.76576 -10.60204 -10.48041 -10.39790 -10.23520 -10.06291 -9.75769 -9.60916 -9.24327 -8.54937 -8.24455 -7.24817 -6.32586 -4.02677 3.45716 3.46152 3.65006 4.51948 4.63075 4.85369 5.18245 5.30549 5.34716 5.47351 5.59624 5.77770 5.81900 5.85586 5.91479 5.97022 6.04468 6.10383 6.16782 6.20249 6.28281 6.43142 6.51190 6.56227 6.58265 6.65100 6.70581 6.74129 6.95051 7.12177 7.32047 7.83924 8.06283 8.07844 8.30927 8.64361 8.89849 9.65025 11.02483 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022187 B = 0.011046 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.707558 B = 2534.153493 C = 3069.374140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.049 0.951 5 C -0.572 4.572 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.486 5.486 14 C 0.025 3.975 15 C -0.125 4.125 16 C -0.116 4.116 17 C 0.037 3.963 18 H 0.067 0.933 19 C -0.095 4.095 20 C 0.065 3.935 21 O -0.586 6.586 22 H 0.046 0.954 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.267 0.733 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.034 0.966 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 2.063 5.470 8.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.199 4.199 3 C 0.068 3.932 4 H 0.066 0.934 5 C -0.611 4.611 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.893 3.107 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.210 5.210 14 C -0.104 4.104 15 C -0.163 4.163 16 C -0.155 4.155 17 C -0.072 4.072 18 H 0.084 0.916 19 C -0.133 4.133 20 C -0.012 4.012 21 O -0.391 6.391 22 H 0.065 0.935 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.384 2.128 5.233 7.804 hybrid contribution -1.612 -0.419 0.216 1.679 sum -6.996 1.708 5.449 9.030 Atomic orbital electron populations 1.22243 0.99040 0.99952 1.00540 1.22371 0.92207 1.02832 1.02457 1.20007 0.96627 0.88261 0.88263 0.93408 1.21905 0.90407 1.43368 1.05404 0.92705 1.25709 1.06559 0.93857 0.92339 1.70820 1.09354 1.44964 1.30157 0.83610 0.74808 0.76464 0.75837 1.21607 1.21503 1.20999 1.65634 1.18098 1.31359 1.05908 1.23266 0.99205 0.95716 0.92167 1.22313 0.97793 0.98092 0.98136 1.22269 0.98254 0.99902 0.95030 1.23059 0.92950 0.96018 0.95164 0.91581 1.21365 1.00342 0.97266 0.94282 1.22741 1.02083 0.84415 0.91947 1.86358 1.87374 1.36323 1.29047 0.93530 0.94310 0.92801 0.90922 0.92542 0.92157 0.92388 0.90949 0.91837 0.92472 0.91565 0.92403 0.92361 0.91129 0.89926 0.94785 0.77879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 7.87 37.15 0.29 -2.67 16 2 C -0.16 -3.54 4.55 -26.73 -0.12 -3.66 16 3 C 0.18 4.12 0.75 -68.86 -0.05 4.06 16 4 H 0.05 1.17 3.33 -51.93 -0.17 1.00 16 5 C -0.57 -15.46 8.73 -34.44 -0.30 -15.76 16 6 H 0.05 1.54 7.82 -52.49 -0.41 1.13 16 7 C 0.02 0.51 5.22 -17.82 -0.09 0.42 16 8 N -0.92 -26.20 12.76 55.43 0.71 -25.49 16 9 Si 1.06 24.85 29.91 -169.99 -5.08 19.76 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.49 -10.10 4.89 -215.62 -1.05 -11.16 16 14 C 0.02 0.46 5.33 -2.19 -0.01 0.45 16 15 C -0.13 -1.89 7.00 -25.35 -0.18 -2.07 16 16 C -0.12 -1.75 6.55 -25.35 -0.17 -1.92 16 17 C 0.04 0.65 1.98 -66.07 -0.13 0.52 16 18 H 0.07 1.18 3.97 -51.93 -0.21 0.98 16 19 C -0.09 -1.69 5.21 -26.73 -0.14 -1.83 16 20 C 0.06 1.25 5.42 37.16 0.20 1.45 16 21 O -0.59 -10.48 13.66 -35.23 -0.48 -10.96 16 22 H 0.05 0.85 7.50 -51.93 -0.39 0.46 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.92 4.77 -51.93 -0.25 0.68 16 25 H 0.07 1.81 6.16 -51.93 -0.32 1.49 16 26 H 0.06 1.26 5.98 -51.92 -0.31 0.95 16 27 H 0.27 7.55 6.15 -40.82 -0.25 7.30 16 28 H 0.06 1.09 3.86 -51.93 -0.20 0.88 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.96 7.86 -51.93 -0.41 0.55 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.87 5.93 -51.93 -0.31 1.56 16 37 H 0.03 0.65 7.68 -51.93 -0.40 0.25 16 38 H 0.38 5.21 9.12 45.56 0.42 5.63 16 LS Contribution 278.27 15.07 4.19 4.19 Total: -1.00 -29.16 278.27 -7.38 -36.54 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.96 Total: 8.12 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -0.70 Total: -21.00 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.35 Total: -36.65 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.48 Total: -10.96 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.76 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.16 -7.38 -36.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308595126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.352 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds