Wall clock time and date at job start Mon Mar 30 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47246 * 2 1 4 4 H 1.08996 * 109.46977 * 302.95165 * 3 2 1 5 5 C 1.50704 * 109.47101 * 182.95106 * 3 2 1 6 6 H 1.07997 * 119.99989 * 243.70025 * 5 3 2 7 7 C 1.37877 * 119.99458 * 63.70412 * 5 3 2 8 8 N 1.31510 * 120.00514 * 6.55076 * 7 5 3 9 9 Si 1.86800 * 119.99779 * 186.54897 * 7 5 3 10 10 H 1.48496 * 109.47224 * 59.99966 * 9 7 5 11 11 H 1.48498 * 109.47117 * 299.99992 * 9 7 5 12 12 H 1.48496 * 109.47449 * 180.02562 * 9 7 5 13 13 N 1.46897 * 109.46808 * 62.95576 * 3 2 1 14 14 C 1.48557 * 111.00530 * 31.89563 * 13 3 2 15 15 C 1.54372 * 104.59916 * 200.96013 * 14 13 3 16 16 C 1.54262 * 105.05857 * 23.85002 * 15 14 13 17 17 C 1.48563 * 111.00109 * 276.47549 * 13 3 2 18 18 H 1.08996 * 110.40866 * 40.26155 * 17 13 3 19 19 C 1.53005 * 110.41087 * 277.82141 * 17 13 3 20 20 C 1.53003 * 109.46969 * 62.88873 * 19 17 13 21 21 O 1.42903 * 109.46965 * 173.80066 * 20 19 17 22 22 H 1.08998 * 109.47047 * 50.52162 * 1 2 3 23 23 H 1.09003 * 109.47297 * 170.51714 * 1 2 3 24 24 H 1.08997 * 109.47433 * 290.51884 * 1 2 3 25 25 H 1.08997 * 109.47267 * 239.99899 * 2 1 3 26 26 H 1.09007 * 109.46960 * 120.00024 * 2 1 3 27 27 H 0.97006 * 119.99873 * 5.74914 * 8 7 5 28 28 H 1.09003 * 110.41112 * 319.73933 * 14 13 3 29 29 H 1.09004 * 110.41405 * 82.17969 * 14 13 3 30 30 H 1.08996 * 110.32644 * 264.95766 * 15 14 13 31 31 H 1.09000 * 110.41151 * 142.79095 * 15 14 13 32 32 H 1.08999 * 110.32427 * 241.10545 * 16 15 14 33 33 H 1.08998 * 110.40924 * 118.94474 * 16 15 14 34 34 H 1.08991 * 109.46793 * 182.88924 * 19 17 13 35 35 H 1.09004 * 109.47127 * 302.89189 * 19 17 13 36 36 H 1.09001 * 109.47180 * 293.79795 * 20 19 17 37 37 H 1.08998 * 109.47113 * 53.80237 * 20 19 17 38 38 H 0.96699 * 113.99592 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6341 1.9714 -0.8623 5 6 3.5452 1.4431 -0.0731 6 1 4.1254 1.8433 0.7451 7 6 4.1815 0.9328 -1.1848 8 7 3.4788 0.5647 -2.2337 9 14 6.0418 0.7644 -1.2011 10 1 6.4670 -0.1359 -0.0995 11 1 6.6615 2.1011 -1.0150 12 1 6.4760 0.1950 -2.5020 13 7 1.6095 2.1140 1.2335 14 6 1.5304 1.1527 2.3634 15 6 0.5902 1.8286 3.3843 16 6 -0.2687 2.8041 2.5535 17 6 0.2247 2.6354 1.1005 18 1 -0.4012 1.9201 0.5670 19 6 0.2296 3.9844 0.3786 20 6 0.7671 3.8007 -1.0421 21 8 0.6375 5.0278 -1.7628 22 1 -0.3633 0.6534 -0.7932 23 1 -0.3634 -1.0136 -0.1693 24 1 -0.3634 0.3602 0.9624 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.5230 0.7286 -2.2590 28 1 1.1089 0.2052 2.0276 29 1 2.5170 0.9973 2.8001 30 1 1.1695 2.3744 4.1290 31 1 -0.0427 1.0850 3.8685 32 1 -0.1110 3.8286 2.8903 33 1 -1.3236 2.5399 2.6281 34 1 -0.7864 4.3766 0.3348 35 1 0.8662 4.6841 0.9202 36 1 1.8178 3.5140 -0.9988 37 1 0.1981 3.0205 -1.5477 38 1 0.9590 4.9847 -2.6738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308595126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:28 Heat of formation + Delta-G solvation = -56.479937 kcal Electronic energy + Delta-G solvation = -17468.323383 eV Core-core repulsion = 14924.305022 eV Total energy + Delta-G solvation = -2544.018361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.04109 -37.75610 -36.25605 -33.62426 -33.10288 -31.23767 -28.11663 -27.86469 -25.16978 -24.14842 -22.16894 -21.04877 -20.86896 -18.90373 -18.31666 -17.17354 -16.47936 -16.06793 -15.66881 -15.26967 -14.94453 -14.89939 -14.69295 -13.94107 -13.63198 -13.06438 -12.99341 -12.77716 -12.59404 -12.53626 -12.27269 -12.21059 -12.02751 -11.97271 -11.89394 -11.58836 -11.33888 -11.10290 -10.84736 -10.52553 -10.25337 -8.86847 -8.49665 -6.19806 1.53288 1.59164 1.78693 2.58392 3.21939 3.27066 3.38620 3.83656 4.01434 4.09039 4.21183 4.24760 4.30227 4.40290 4.46544 4.49506 4.54237 4.66598 4.81178 4.86650 4.88489 5.01510 5.05369 5.07732 5.14017 5.16836 5.21100 5.30961 5.35191 5.44677 5.60119 6.03580 6.19725 6.46178 6.59395 6.77006 6.85829 7.53916 8.85523 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022187 B = 0.011046 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.707558 B = 2534.153493 C = 3069.374140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.179 3.821 4 H 0.039 0.961 5 C -0.583 4.583 6 H 0.034 0.966 7 C -0.025 4.025 8 N -0.936 5.936 9 Si 1.104 2.896 10 H -0.277 1.277 11 H -0.278 1.278 12 H -0.285 1.285 13 N -0.506 5.506 14 C 0.020 3.980 15 C -0.116 4.116 16 C -0.110 4.110 17 C 0.034 3.966 18 H 0.069 0.931 19 C -0.091 4.091 20 C 0.075 3.925 21 O -0.590 6.590 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.259 0.741 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.294 2.328 6.730 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.071 3.929 4 H 0.056 0.944 5 C -0.622 4.622 6 H 0.053 0.947 7 C -0.224 4.224 8 N -0.574 5.574 9 Si 0.928 3.072 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.230 5.230 14 C -0.108 4.108 15 C -0.154 4.154 16 C -0.148 4.148 17 C -0.074 4.074 18 H 0.087 0.913 19 C -0.129 4.129 20 C -0.003 4.003 21 O -0.397 6.397 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.879 2.403 6.502 9.766 hybrid contribution -1.143 -0.453 -0.183 1.243 sum -8.022 1.951 6.319 10.397 Atomic orbital electron populations 1.22110 0.95746 1.01199 1.01513 1.22197 0.95113 1.01386 1.00430 1.19796 0.94601 0.89094 0.89427 0.94389 1.22204 0.92750 1.42712 1.04502 0.94713 1.26837 1.09821 0.93571 0.92123 1.70909 1.09074 1.46552 1.30902 0.83080 0.71001 0.77099 0.76038 1.20312 1.20401 1.21082 1.65505 1.20629 1.31710 1.05163 1.23294 0.99221 0.95830 0.92488 1.22280 0.97360 0.98558 0.97199 1.22284 0.99719 1.00366 0.92452 1.23158 0.91215 0.95640 0.97384 0.91326 1.21373 1.01235 0.97298 0.92956 1.22502 0.99595 0.84861 0.93301 1.86325 1.87368 1.35669 1.30381 0.93633 0.92593 0.90967 0.94286 0.93122 0.93052 0.92448 0.93053 0.91300 0.89726 0.90905 0.89473 0.90004 0.92257 0.94026 0.94776 0.76048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 7.87 71.98 0.57 -4.67 16 2 C -0.15 -6.80 4.55 30.59 0.14 -6.66 16 3 C 0.18 8.53 0.75 44.17 0.03 8.57 16 4 H 0.04 1.92 3.33 -2.39 -0.01 1.91 16 5 C -0.58 -32.44 8.73 25.60 0.22 -32.22 16 6 H 0.03 2.02 7.82 -2.91 -0.02 1.99 16 7 C -0.03 -1.42 5.22 84.66 0.44 -0.97 16 8 N -0.94 -54.98 12.76 21.45 0.27 -54.71 16 9 Si 1.10 50.85 29.91 68.60 2.05 52.90 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 13 N -0.51 -20.86 4.89 -836.10 -4.09 -24.95 16 14 C 0.02 0.71 5.33 86.45 0.46 1.17 16 15 C -0.12 -3.13 7.00 31.49 0.22 -2.91 16 16 C -0.11 -2.89 6.55 31.49 0.21 -2.68 16 17 C 0.03 1.15 1.98 45.06 0.09 1.24 16 18 H 0.07 2.28 3.97 -2.39 -0.01 2.27 16 19 C -0.09 -3.10 5.21 30.60 0.16 -2.94 16 20 C 0.07 2.86 5.42 71.98 0.39 3.25 16 21 O -0.59 -20.62 13.66 -148.98 -2.04 -22.65 16 22 H 0.04 1.60 7.50 -2.39 -0.02 1.58 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.07 2.27 4.77 -2.39 -0.01 2.26 16 25 H 0.04 1.99 6.16 -2.39 -0.01 1.98 16 26 H 0.05 2.27 5.98 -2.38 -0.01 2.26 16 27 H 0.26 15.18 6.15 -92.70 -0.57 14.61 16 28 H 0.06 2.07 3.86 -2.39 -0.01 2.06 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.84 7.86 -2.39 -0.02 1.82 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.40 16 35 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.04 1.94 5.93 -2.39 -0.01 1.93 16 37 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 38 H 0.39 10.64 9.12 -74.06 -0.68 9.97 16 Total: -1.00 -63.68 278.27 -0.29 -63.97 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.58 Total: 24.26 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 2.93 Total: -38.82 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.82 Total: -79.66 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -2.04 Total: -22.65 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.90 kcal Total: -63.68 -0.29 -63.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308595126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.488 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds