Wall clock time and date at job start Mon Mar 30 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47519 * 2 1 4 4 H 1.09008 * 109.46994 * 55.00235 * 3 2 1 5 5 C 1.50700 * 109.47131 * 174.99971 * 3 2 1 6 6 H 1.07995 * 120.00214 * 120.00238 * 5 3 2 7 7 C 1.37881 * 120.00208 * 299.99759 * 5 3 2 8 8 N 1.31511 * 119.99918 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00134 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46882 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46575 * 120.00486 * 9 7 5 12 12 H 1.48500 * 109.47126 * 240.00177 * 9 7 5 13 13 N 1.46893 * 109.47364 * 294.99856 * 3 2 1 14 14 C 1.48528 * 111.00425 * 293.38188 * 13 3 2 15 15 C 1.54936 * 103.23022 * 200.27666 * 14 13 3 16 16 C 1.54593 * 102.91939 * 37.41127 * 15 14 13 17 17 C 1.47904 * 111.00310 * 175.98281 * 13 3 2 18 18 H 1.09003 * 109.91484 * 26.48918 * 17 13 3 19 19 C 1.53000 * 109.91721 * 265.20212 * 17 13 3 20 20 C 1.53001 * 109.47512 * 68.19788 * 19 17 13 21 21 O 1.42895 * 109.47114 * 174.41574 * 20 19 17 22 22 H 1.08993 * 109.47506 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46920 * 300.00309 * 1 2 3 24 24 H 1.08999 * 109.46910 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.46920 * 239.99691 * 2 1 3 26 26 H 1.09006 * 109.47288 * 120.00347 * 2 1 3 27 27 H 0.96999 * 120.00517 * 179.97438 * 8 7 5 28 28 H 1.09006 * 110.66335 * 318.71597 * 14 13 3 29 29 H 1.09005 * 110.66932 * 81.67208 * 14 13 3 30 30 H 1.08993 * 110.72279 * 279.05501 * 15 14 13 31 31 H 1.09003 * 110.72110 * 155.77299 * 15 14 13 32 32 H 1.08996 * 110.30909 * 219.12231 * 16 15 14 33 33 H 1.09009 * 110.30713 * 96.96089 * 16 15 14 34 34 H 1.08997 * 109.46931 * 188.20275 * 19 17 13 35 35 H 1.09008 * 109.46941 * 308.19960 * 19 17 13 36 36 H 1.08995 * 109.46966 * 294.41714 * 20 19 17 37 37 H 1.09001 * 109.46918 * 54.41618 * 20 19 17 38 38 H 0.96701 * 114.00323 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0051 0.8797 1.3812 10 1 6.5988 1.5448 0.1936 11 1 6.4000 1.6153 2.6092 12 1 6.4961 -0.5194 1.4627 13 7 1.6516 2.0992 -1.2552 14 6 2.3522 1.4894 -2.4142 15 6 2.2542 2.5857 -3.5046 16 6 2.4255 3.8928 -2.6971 17 6 2.0446 3.5251 -1.2511 18 1 2.9006 3.6724 -0.5926 19 6 0.8700 4.3882 -0.7860 20 6 0.5932 4.1180 0.6944 21 8 -0.4156 5.0156 1.1618 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8293 -0.0620 2.9495 28 1 3.3940 1.2829 -2.1687 29 1 1.8459 0.5786 -2.7341 30 1 1.2798 2.5586 -3.9923 31 1 3.0556 2.4757 -4.2352 32 1 1.7574 4.6643 -3.0798 33 1 3.4606 4.2317 -2.7411 34 1 1.1161 5.4411 -0.9234 35 1 -0.0158 4.1426 -1.3719 36 1 0.2513 3.0906 0.8184 37 1 1.5076 4.2684 1.2683 38 1 -0.6421 4.9013 2.0950 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308595127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:30 Heat of formation + Delta-G solvation = -60.755502 kcal Electronic energy + Delta-G solvation = -17268.502423 eV Core-core repulsion = 14724.298660 eV Total energy + Delta-G solvation = -2544.203763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78750 -36.24881 -34.27060 -31.69803 -31.42657 -29.55494 -26.53163 -26.06597 -23.21967 -22.12244 -20.66957 -19.38297 -19.01458 -16.95173 -16.03300 -15.61117 -14.82002 -14.55697 -14.09817 -13.43999 -13.10083 -12.97578 -12.71265 -12.27403 -12.05359 -11.49833 -11.36961 -11.08781 -10.96725 -10.86144 -10.58152 -10.52868 -10.41532 -10.13366 -9.95602 -9.92168 -9.64149 -9.51556 -9.20787 -9.02718 -8.35534 -7.19033 -6.02770 -4.15132 3.22294 3.31580 3.34349 4.36049 4.69972 5.05193 5.21466 5.37041 5.46802 5.64055 5.78858 5.91487 6.03250 6.17910 6.22976 6.31969 6.36341 6.40715 6.48288 6.49424 6.59954 6.63760 6.70187 6.72777 6.92602 7.00339 7.09132 7.16606 7.33893 7.59222 7.72908 7.96606 8.06452 8.13786 8.26007 8.42773 8.95949 9.51712 10.96430 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.010881 C = 0.009997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.838915 B = 2572.646888 C = 2800.118183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.198 3.802 4 H 0.046 0.954 5 C -0.542 4.542 6 H 0.059 0.941 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.510 5.510 14 C 0.039 3.961 15 C -0.125 4.125 16 C -0.122 4.122 17 C 0.067 3.933 18 H 0.067 0.933 19 C -0.093 4.093 20 C 0.073 3.927 21 O -0.587 6.587 22 H 0.025 0.975 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 4.159 -4.976 7.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.091 3.909 4 H 0.064 0.936 5 C -0.581 4.581 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.235 5.235 14 C -0.089 4.089 15 C -0.163 4.163 16 C -0.161 4.161 17 C -0.042 4.042 18 H 0.085 0.915 19 C -0.131 4.131 20 C -0.004 4.004 21 O -0.392 6.392 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -3.753 4.204 -5.455 7.843 hybrid contribution 2.038 -0.278 0.933 2.258 sum -1.716 3.926 -4.522 6.229 Atomic orbital electron populations 1.21715 0.98920 0.98434 1.00502 1.21563 0.92168 0.99242 1.01897 1.19562 0.93109 0.91398 0.86805 0.93607 1.21784 0.92911 1.37995 1.05379 0.92322 1.24905 0.97714 0.95058 0.95725 1.69877 1.34673 1.38310 1.09448 0.86658 0.86345 0.77748 0.77987 1.19926 1.21053 1.21004 1.65018 1.53188 1.00466 1.04803 1.23098 0.99094 0.96221 0.90498 1.22479 1.00607 0.95611 0.97583 1.22383 1.00449 0.97639 0.95591 1.22201 0.95999 0.90595 0.95385 0.91474 1.21447 0.98967 0.98367 0.94365 1.22468 0.89728 0.92838 0.95382 1.86387 1.60370 1.61807 1.30600 0.95609 0.94402 0.93307 0.95055 0.89075 0.92956 0.92078 0.91801 0.91935 0.92448 0.92080 0.92326 0.92507 0.91571 0.91975 0.93856 0.78165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.80 37.16 0.36 -2.44 16 2 C -0.11 -2.57 5.21 -26.73 -0.14 -2.70 16 3 C 0.20 4.65 1.43 -68.87 -0.10 4.56 16 4 H 0.05 1.17 5.26 -51.92 -0.27 0.89 16 5 C -0.54 -13.92 6.41 -34.44 -0.22 -14.14 16 6 H 0.06 1.53 6.00 -52.49 -0.31 1.21 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.51 -10.45 4.25 -216.05 -0.92 -11.37 16 14 C 0.04 0.75 5.43 -1.90 -0.01 0.74 16 15 C -0.12 -1.99 7.06 -24.87 -0.18 -2.16 16 16 C -0.12 -1.98 6.57 -25.38 -0.17 -2.15 16 17 C 0.07 1.28 2.27 -66.65 -0.15 1.13 16 18 H 0.07 1.45 6.59 -51.93 -0.34 1.10 16 19 C -0.09 -1.66 5.03 -26.73 -0.13 -1.79 16 20 C 0.07 1.34 5.86 37.16 0.22 1.55 16 21 O -0.59 -9.82 13.66 -35.23 -0.48 -10.30 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 25 H 0.03 0.72 6.90 -51.93 -0.36 0.36 16 26 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.06 1.31 5.77 -51.93 -0.30 1.01 16 29 H 0.06 1.21 7.58 -51.93 -0.39 0.81 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.89 7.69 -51.93 -0.40 0.49 16 33 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.19 8.14 -51.92 -0.42 0.76 16 36 H 0.06 1.24 6.23 -51.93 -0.32 0.92 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.37 4.59 9.12 45.56 0.42 5.01 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -27.42 288.71 -7.57 -34.99 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.52 Total: 5.91 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.61 Total: -15.70 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: -0.29 Total: -34.92 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.48 Total: -10.30 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.42 -7.57 -34.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308595127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.767 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds