Wall clock time and date at job start Mon Mar 30 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47519 * 2 1 4 4 H 1.09008 * 109.46994 * 55.00235 * 3 2 1 5 5 C 1.50700 * 109.47131 * 174.99971 * 3 2 1 6 6 H 1.07995 * 120.00214 * 120.00238 * 5 3 2 7 7 C 1.37881 * 120.00208 * 299.99759 * 5 3 2 8 8 N 1.31511 * 119.99918 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00134 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46882 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46575 * 120.00486 * 9 7 5 12 12 H 1.48500 * 109.47126 * 240.00177 * 9 7 5 13 13 N 1.46893 * 109.47364 * 294.99856 * 3 2 1 14 14 C 1.48528 * 111.00425 * 293.38188 * 13 3 2 15 15 C 1.54936 * 103.23022 * 200.27666 * 14 13 3 16 16 C 1.54593 * 102.91939 * 37.41127 * 15 14 13 17 17 C 1.47904 * 111.00310 * 175.98281 * 13 3 2 18 18 H 1.09003 * 109.91484 * 26.48918 * 17 13 3 19 19 C 1.53000 * 109.91721 * 265.20212 * 17 13 3 20 20 C 1.53001 * 109.47512 * 68.19788 * 19 17 13 21 21 O 1.42895 * 109.47114 * 174.41574 * 20 19 17 22 22 H 1.08993 * 109.47506 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46920 * 300.00309 * 1 2 3 24 24 H 1.08999 * 109.46910 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.46920 * 239.99691 * 2 1 3 26 26 H 1.09006 * 109.47288 * 120.00347 * 2 1 3 27 27 H 0.96999 * 120.00517 * 179.97438 * 8 7 5 28 28 H 1.09006 * 110.66335 * 318.71597 * 14 13 3 29 29 H 1.09005 * 110.66932 * 81.67208 * 14 13 3 30 30 H 1.08993 * 110.72279 * 279.05501 * 15 14 13 31 31 H 1.09003 * 110.72110 * 155.77299 * 15 14 13 32 32 H 1.08996 * 110.30909 * 219.12231 * 16 15 14 33 33 H 1.09009 * 110.30713 * 96.96089 * 16 15 14 34 34 H 1.08997 * 109.46931 * 188.20275 * 19 17 13 35 35 H 1.09008 * 109.46941 * 308.19960 * 19 17 13 36 36 H 1.08995 * 109.46966 * 294.41714 * 20 19 17 37 37 H 1.09001 * 109.46918 * 54.41618 * 20 19 17 38 38 H 0.96701 * 114.00323 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0051 0.8797 1.3812 10 1 6.5988 1.5448 0.1936 11 1 6.4000 1.6153 2.6092 12 1 6.4961 -0.5194 1.4627 13 7 1.6516 2.0992 -1.2552 14 6 2.3522 1.4894 -2.4142 15 6 2.2542 2.5857 -3.5046 16 6 2.4255 3.8928 -2.6971 17 6 2.0446 3.5251 -1.2511 18 1 2.9006 3.6724 -0.5926 19 6 0.8700 4.3882 -0.7860 20 6 0.5932 4.1180 0.6944 21 8 -0.4156 5.0156 1.1618 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8293 -0.0620 2.9495 28 1 3.3940 1.2829 -2.1687 29 1 1.8459 0.5786 -2.7341 30 1 1.2798 2.5586 -3.9923 31 1 3.0556 2.4757 -4.2352 32 1 1.7574 4.6643 -3.0798 33 1 3.4606 4.2317 -2.7411 34 1 1.1161 5.4411 -0.9234 35 1 -0.0158 4.1426 -1.3719 36 1 0.2513 3.0906 0.8184 37 1 1.5076 4.2684 1.2683 38 1 -0.6421 4.9013 2.0950 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308595127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:29 Heat of formation + Delta-G solvation = -79.445605 kcal Electronic energy + Delta-G solvation = -17269.312886 eV Core-core repulsion = 14724.298660 eV Total energy + Delta-G solvation = -2545.014227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35631 -37.65256 -36.03515 -33.61870 -32.86452 -31.16958 -28.11857 -27.81029 -25.00241 -23.71326 -22.12083 -20.90819 -20.78470 -18.57888 -17.74695 -17.28942 -16.42999 -16.11939 -15.73221 -14.95766 -14.76620 -14.62550 -14.31806 -13.86210 -13.73739 -13.19503 -12.95130 -12.84651 -12.56937 -12.46736 -12.26376 -12.14253 -11.93388 -11.79101 -11.59773 -11.50791 -11.25929 -11.13103 -10.92466 -10.75906 -10.33214 -8.94081 -8.02246 -6.22014 1.34162 1.38481 1.46652 2.39886 3.16511 3.36274 3.53127 3.96966 4.08841 4.26773 4.31741 4.46757 4.55908 4.64172 4.73377 4.77081 4.85117 4.90957 4.99304 5.05250 5.06644 5.16918 5.19589 5.29936 5.30833 5.40135 5.46319 5.49917 5.59935 5.66517 5.83068 6.09366 6.23712 6.44477 6.60883 6.86881 7.01135 7.47310 8.93038 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.010881 C = 0.009997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.838915 B = 2572.646888 C = 2800.118183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.205 3.795 4 H 0.024 0.976 5 C -0.544 4.544 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.508 5.508 14 C 0.035 3.965 15 C -0.113 4.113 16 C -0.118 4.118 17 C 0.064 3.936 18 H 0.035 0.965 19 C -0.087 4.087 20 C 0.082 3.918 21 O -0.589 6.589 22 H 0.043 0.957 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 5.021 -6.454 8.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.098 3.902 4 H 0.042 0.958 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.232 5.232 14 C -0.093 4.093 15 C -0.151 4.151 16 C -0.156 4.156 17 C -0.045 4.045 18 H 0.053 0.947 19 C -0.125 4.125 20 C 0.005 3.995 21 O -0.397 6.397 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.122 5.075 -6.932 9.529 hybrid contribution 2.120 -0.529 1.414 2.603 sum -2.002 4.546 -5.518 7.425 Atomic orbital electron populations 1.21565 0.96468 0.99668 1.00565 1.21427 0.94317 0.98671 1.00099 1.19338 0.91701 0.91520 0.87685 0.95804 1.22024 0.94265 1.37130 1.04908 0.93082 1.25544 1.01242 0.95199 0.95745 1.69993 1.35934 1.39206 1.09848 0.85791 0.82182 0.77566 0.77799 1.19666 1.20937 1.20886 1.64981 1.53077 1.01309 1.03825 1.23123 0.97270 0.97680 0.91275 1.22443 1.02332 0.93609 0.96726 1.22382 1.01347 0.98477 0.93404 1.22243 0.95399 0.89890 0.96944 0.94693 1.21393 0.98458 0.98948 0.93652 1.22234 0.89273 0.92049 0.95946 1.86343 1.59666 1.61190 1.32481 0.93784 0.94896 0.92544 0.95486 0.92092 0.93087 0.94730 0.91677 0.90346 0.90416 0.89639 0.91870 0.90909 0.91172 0.93979 0.95554 0.75984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.80 71.98 0.71 -4.29 16 2 C -0.11 -5.02 5.21 30.59 0.16 -4.86 16 3 C 0.21 9.81 1.43 44.17 0.06 9.88 16 4 H 0.02 1.26 5.26 -2.38 -0.01 1.25 16 5 C -0.54 -28.53 6.41 25.60 0.16 -28.36 16 6 H 0.05 2.71 6.00 -2.91 -0.02 2.69 16 7 C 0.02 1.20 5.29 84.66 0.45 1.65 16 8 N -0.91 -50.94 11.29 21.45 0.24 -50.70 16 9 Si 0.94 43.04 29.54 68.60 2.03 45.07 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.51 -20.56 4.25 -837.46 -3.56 -24.12 16 14 C 0.03 1.30 5.43 86.65 0.47 1.77 16 15 C -0.11 -3.27 7.06 31.80 0.22 -3.05 16 16 C -0.12 -3.50 6.57 31.47 0.21 -3.30 16 17 C 0.06 2.39 2.27 45.06 0.10 2.49 16 18 H 0.03 1.52 6.59 -2.39 -0.02 1.51 16 19 C -0.09 -2.94 5.03 30.59 0.15 -2.78 16 20 C 0.08 3.01 5.86 71.98 0.42 3.43 16 21 O -0.59 -18.92 13.66 -148.98 -2.03 -20.95 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 23 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.06 2.14 7.75 -2.39 -0.02 2.13 16 25 H 0.03 1.25 6.90 -2.38 -0.02 1.23 16 26 H 0.06 3.26 5.95 -2.38 -0.01 3.24 16 27 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.03 1.48 5.77 -2.38 -0.01 1.46 16 29 H 0.06 2.39 7.58 -2.38 -0.02 2.37 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.15 7.69 -2.39 -0.02 2.13 16 33 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.04 1.70 6.23 -2.39 -0.01 1.69 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.39 9.16 9.12 -74.06 -0.68 8.48 16 Total: -1.00 -58.54 288.71 0.15 -58.38 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.36 Total: 19.75 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 3.12 Total: -27.43 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -3.32 Total: -74.81 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -2.03 Total: -20.95 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -58.54 0.15 -58.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308595127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.064 kcal (2) G-P(sol) polarization free energy of solvation -58.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds