Wall clock time and date at job start Mon Mar 30 2020 03:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47223 * 2 1 4 4 H 1.08999 * 109.49252 * 55.03369 * 3 2 1 5 5 C 1.53094 * 109.48250 * 175.05948 * 3 2 1 6 6 C 1.53184 * 109.16152 * 62.37424 * 5 3 2 7 7 H 1.09001 * 109.61574 * 297.07323 * 6 5 3 8 8 C 1.53002 * 109.54393 * 176.84630 * 6 5 3 9 9 N 1.46895 * 109.46962 * 175.44508 * 8 6 5 10 10 C 1.46904 * 110.99508 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.53175 * 109.03593 * 56.98299 * 6 5 3 20 20 C 1.53093 * 109.16573 * 303.01959 * 19 6 5 21 21 O 1.42904 * 109.48584 * 295.00264 * 3 2 1 22 22 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46722 * 299.99658 * 1 2 3 24 24 H 1.08989 * 109.47267 * 59.99609 * 1 2 3 25 25 H 1.09004 * 109.46741 * 239.99802 * 2 1 3 26 26 H 1.09003 * 109.47159 * 120.00356 * 2 1 3 27 27 H 1.08995 * 109.52342 * 302.46969 * 5 3 2 28 28 H 1.08995 * 109.52368 * 182.28147 * 5 3 2 29 29 H 1.09008 * 109.46415 * 55.44465 * 8 6 5 30 30 H 1.08997 * 109.47209 * 295.45017 * 8 6 5 31 31 H 1.00890 * 111.00188 * 56.04706 * 9 8 6 32 32 H 1.09003 * 109.47066 * 60.00292 * 10 9 8 33 33 H 1.08996 * 109.47319 * 299.99765 * 10 9 8 34 34 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 35 35 H 1.09004 * 109.52684 * 62.92424 * 19 6 5 36 36 H 1.09000 * 109.52559 * 183.11498 * 19 6 5 37 37 H 1.08990 * 109.48670 * 177.59131 * 20 19 6 38 38 H 1.09007 * 109.48043 * 297.62110 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6061 1.9816 0.8420 5 6 3.5659 1.4445 0.1243 6 6 4.1705 0.7377 -1.0929 7 1 3.8507 -0.3043 -1.1072 8 6 5.6972 0.8036 -1.0170 9 7 6.2762 0.0328 -2.1253 10 6 7.7441 0.0732 -2.0841 11 6 8.3011 -0.7261 -3.2340 12 1 7.6316 -1.2155 -3.9259 13 6 9.6653 -0.8334 -3.4021 14 7 10.4806 -0.2380 -2.5593 15 14 10.3556 -1.8235 -4.8278 16 1 10.5470 -3.2340 -4.4042 17 1 11.6610 -1.2499 -5.2428 18 1 9.4077 -1.7740 -5.9698 19 6 3.6901 1.4386 -2.3673 20 6 2.1594 1.4369 -2.3954 21 8 1.6621 2.0816 -1.2209 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8898 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8580 0.9186 1.0332 28 1 3.9266 2.4722 0.1651 29 1 6.0322 0.3838 -0.0684 30 1 6.0201 1.8421 -1.0889 31 1 5.9299 0.3615 -3.0141 32 1 8.0930 -0.3519 -1.1430 33 1 8.0815 1.1066 -2.1633 34 1 10.1221 0.2764 -1.8192 35 1 4.0534 2.4663 -2.3768 36 1 4.0710 0.9086 -3.2403 37 1 1.8114 1.9720 -3.2788 38 1 1.7976 0.4091 -2.4268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308739193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:04 Heat of formation + Delta-G solvation = -77.209580 kcal Electronic energy + Delta-G solvation = -16192.837962 eV Core-core repulsion = 13647.920696 eV Total energy + Delta-G solvation = -2544.917265 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.98998 -36.17166 -33.74234 -33.48199 -31.83138 -30.24999 -27.40123 -25.04785 -23.56946 -23.17337 -21.85925 -21.11036 -19.07965 -17.03323 -16.42081 -15.92453 -15.43970 -14.71903 -14.44275 -13.84369 -13.74241 -13.67149 -13.32647 -13.10468 -12.80032 -12.27887 -11.82168 -11.70570 -11.62468 -11.34430 -11.21827 -11.00548 -10.76336 -10.67999 -10.50457 -10.33515 -10.10203 -9.91677 -9.35597 -8.62627 -8.41354 -7.42147 -6.38777 -4.07679 3.43994 3.47561 3.63518 3.83277 4.51567 4.62359 4.75615 4.83396 4.88685 5.03517 5.06400 5.27663 5.34419 5.38230 5.43886 5.50177 5.55920 5.66118 5.74966 5.81837 5.86066 5.92612 5.95887 6.10362 6.13535 6.15818 6.23725 6.37842 6.55254 6.94535 7.14583 7.22017 7.77319 8.14517 8.45418 8.56869 8.86212 9.64478 11.01174 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051815 B = 0.004712 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.255742 B = 5940.916262 C = 6051.471672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 C 0.092 3.908 4 H 0.097 0.903 5 C -0.144 4.144 6 C -0.086 4.086 7 H 0.080 0.920 8 C 0.063 3.937 9 N -0.683 5.683 10 C 0.183 3.817 11 C -0.596 4.596 12 H 0.056 0.944 13 C 0.014 3.986 14 N -0.914 5.914 15 Si 1.077 2.923 16 H -0.287 1.287 17 H -0.285 1.285 18 H -0.288 1.288 19 C -0.152 4.152 20 C 0.059 3.941 21 O -0.378 6.378 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.330 0.670 32 H 0.017 0.983 33 H -0.025 1.025 34 H 0.267 0.733 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.044 2.916 4.119 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.034 3.966 4 H 0.115 0.885 5 C -0.182 4.182 6 C -0.105 4.105 7 H 0.098 0.902 8 C -0.067 4.067 9 N -0.314 5.314 10 C 0.055 3.945 11 C -0.634 4.634 12 H 0.074 0.926 13 C -0.190 4.190 14 N -0.551 5.551 15 Si 0.905 3.095 16 H -0.214 1.214 17 H -0.211 1.211 18 H -0.214 1.214 19 C -0.190 4.190 20 C -0.018 4.018 21 O -0.297 6.297 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.147 0.853 32 H 0.035 0.965 33 H -0.007 1.007 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.771 1.990 3.727 17.295 hybrid contribution -0.960 1.166 0.545 1.605 sum -17.730 3.156 4.273 18.509 Atomic orbital electron populations 1.21701 0.95422 1.01278 1.02073 1.22204 0.96656 0.97571 1.03279 1.22191 0.93878 0.93061 0.87421 0.88472 1.22221 0.95441 1.01638 0.98945 1.21228 0.95593 0.99864 0.93781 0.90163 1.21930 0.92689 0.95393 0.96655 1.60593 1.09978 1.56303 1.04541 1.19661 0.82495 0.94458 0.97842 1.22033 0.94083 1.34633 1.12663 0.92577 1.25886 0.93565 0.97651 1.01875 1.70764 1.37851 1.31333 1.15124 0.83434 0.75578 0.75805 0.74685 1.21392 1.21053 1.21450 1.22248 0.96103 1.01515 0.99122 1.22577 0.93473 0.97841 0.87906 1.87943 1.74688 1.53323 1.13744 0.92973 0.92922 0.92306 0.90829 0.91021 0.90952 0.91268 0.91906 0.96510 0.85289 0.96456 1.00733 0.92278 0.91518 0.90373 0.89266 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.81 37.16 0.36 -0.97 16 2 C -0.16 -1.61 4.74 -26.73 -0.13 -1.74 16 3 C 0.09 1.02 3.29 -26.69 -0.09 0.93 16 4 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.14 -1.75 4.93 -26.59 -0.13 -1.88 16 6 C -0.09 -1.22 2.18 -90.43 -0.20 -1.42 16 7 H 0.08 1.18 6.74 -51.93 -0.35 0.83 16 8 C 0.06 1.14 5.15 -3.83 -0.02 1.12 16 9 N -0.68 -14.96 6.49 -115.05 -0.75 -15.71 16 10 C 0.18 4.88 4.75 -4.97 -0.02 4.86 16 11 C -0.60 -17.36 9.32 -34.44 -0.32 -17.68 16 12 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 13 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 14 N -0.91 -28.39 13.65 55.43 0.76 -27.64 16 15 Si 1.08 25.64 29.90 -169.99 -5.08 20.56 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 19 C -0.15 -2.03 5.11 -26.59 -0.14 -2.17 16 20 C 0.06 0.68 6.52 37.21 0.24 0.93 16 21 O -0.38 -4.77 10.13 -35.23 -0.36 -5.13 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.57 7.82 -51.94 -0.41 0.16 16 25 H 0.07 0.81 4.98 -51.93 -0.26 0.55 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.33 6.92 7.05 -39.30 -0.28 6.64 16 32 H 0.02 0.49 8.01 -51.93 -0.42 0.08 16 33 H -0.02 -0.70 8.01 -51.93 -0.42 -1.11 16 34 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.08 6.84 -51.93 -0.36 0.73 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.59 6.24 -51.92 -0.32 0.27 16 LS Contribution 294.89 15.07 4.44 4.44 Total: -1.00 -31.14 294.89 -8.05 -39.19 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.53 Total: 1.99 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.53 Total: -17.71 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.01 Total: -43.35 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.36 Total: -5.13 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.14 -8.05 -39.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308739193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.022 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds