Wall clock time and date at job start Mon Mar 30 2020 03:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47223 * 2 1 4 4 H 1.08999 * 109.49252 * 55.03369 * 3 2 1 5 5 C 1.53094 * 109.48250 * 175.05948 * 3 2 1 6 6 C 1.53184 * 109.16152 * 62.37424 * 5 3 2 7 7 H 1.09001 * 109.61574 * 297.07323 * 6 5 3 8 8 C 1.53002 * 109.54393 * 176.84630 * 6 5 3 9 9 N 1.46895 * 109.46962 * 175.44508 * 8 6 5 10 10 C 1.46904 * 110.99508 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46874 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00159 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00120 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00089 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99938 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.53175 * 109.03593 * 56.98299 * 6 5 3 20 20 C 1.53093 * 109.16573 * 303.01959 * 19 6 5 21 21 O 1.42904 * 109.48584 * 295.00264 * 3 2 1 22 22 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46722 * 299.99658 * 1 2 3 24 24 H 1.08989 * 109.47267 * 59.99609 * 1 2 3 25 25 H 1.09004 * 109.46741 * 239.99802 * 2 1 3 26 26 H 1.09003 * 109.47159 * 120.00356 * 2 1 3 27 27 H 1.08995 * 109.52342 * 302.46969 * 5 3 2 28 28 H 1.08995 * 109.52368 * 182.28147 * 5 3 2 29 29 H 1.09008 * 109.46415 * 55.44465 * 8 6 5 30 30 H 1.08997 * 109.47209 * 295.45017 * 8 6 5 31 31 H 1.00890 * 111.00188 * 56.04706 * 9 8 6 32 32 H 1.09003 * 109.47066 * 60.00292 * 10 9 8 33 33 H 1.08996 * 109.47319 * 299.99765 * 10 9 8 34 34 H 0.96998 * 119.99255 * 0.02562 * 14 13 11 35 35 H 1.09004 * 109.52684 * 62.92424 * 19 6 5 36 36 H 1.09000 * 109.52559 * 183.11498 * 19 6 5 37 37 H 1.08990 * 109.48670 * 177.59131 * 20 19 6 38 38 H 1.09007 * 109.48043 * 297.62110 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6061 1.9816 0.8420 5 6 3.5659 1.4445 0.1243 6 6 4.1705 0.7377 -1.0929 7 1 3.8507 -0.3043 -1.1072 8 6 5.6972 0.8036 -1.0170 9 7 6.2762 0.0328 -2.1253 10 6 7.7441 0.0732 -2.0841 11 6 8.3011 -0.7261 -3.2340 12 1 7.6316 -1.2155 -3.9259 13 6 9.6653 -0.8334 -3.4021 14 7 10.4806 -0.2380 -2.5593 15 14 10.3556 -1.8235 -4.8278 16 1 10.5470 -3.2340 -4.4042 17 1 11.6610 -1.2499 -5.2428 18 1 9.4077 -1.7740 -5.9698 19 6 3.6901 1.4386 -2.3673 20 6 2.1594 1.4369 -2.3954 21 8 1.6621 2.0816 -1.2209 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8898 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8580 0.9186 1.0332 28 1 3.9266 2.4722 0.1651 29 1 6.0322 0.3838 -0.0684 30 1 6.0201 1.8421 -1.0889 31 1 5.9299 0.3615 -3.0141 32 1 8.0930 -0.3519 -1.1430 33 1 8.0815 1.1066 -2.1633 34 1 10.1221 0.2764 -1.8192 35 1 4.0534 2.4663 -2.3768 36 1 4.0710 0.9086 -3.2403 37 1 1.8114 1.9720 -3.2788 38 1 1.7976 0.4091 -2.4268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308739193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:04 Heat of formation + Delta-G solvation = -97.953271 kcal Electronic energy + Delta-G solvation = -16193.737476 eV Core-core repulsion = 13647.920696 eV Total energy + Delta-G solvation = -2545.816779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.98969 -37.76766 -35.52489 -34.39392 -33.57465 -31.16532 -29.08856 -26.69365 -24.72289 -24.33765 -23.65318 -22.39382 -20.07776 -19.11059 -17.47110 -16.94324 -16.85904 -16.12076 -15.71936 -15.62395 -15.20099 -14.75980 -14.74164 -14.45750 -13.81644 -13.56895 -13.46362 -13.14288 -12.97916 -12.60337 -12.53022 -12.45655 -12.14540 -11.92961 -11.91203 -11.70331 -11.45972 -10.98653 -10.77664 -10.64194 -10.30828 -9.30421 -8.74792 -6.45987 1.52904 1.62358 1.80715 2.54264 2.93558 3.10452 3.35729 3.72021 3.75256 3.84469 4.01843 4.09569 4.26038 4.33957 4.41428 4.44411 4.58501 4.61498 4.70386 4.75453 4.82890 4.85645 4.88693 4.96503 4.98654 5.05041 5.13890 5.16622 5.32760 5.38047 5.44599 5.68558 5.97041 6.30761 6.33582 6.50360 6.63138 7.36946 8.65109 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051815 B = 0.004712 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.255742 B = 5940.916262 C = 6051.471672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.158 4.158 3 C 0.092 3.908 4 H 0.114 0.886 5 C -0.140 4.140 6 C -0.076 4.076 7 H 0.079 0.921 8 C 0.064 3.936 9 N -0.681 5.681 10 C 0.192 3.808 11 C -0.612 4.612 12 H 0.057 0.943 13 C -0.038 4.038 14 N -0.936 5.936 15 Si 1.128 2.872 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.151 4.151 20 C 0.062 3.938 21 O -0.389 6.389 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.011 0.989 31 H 0.336 0.664 32 H -0.005 1.005 33 H -0.046 1.046 34 H 0.253 0.747 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 2.323 3.643 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 C 0.035 3.965 4 H 0.131 0.869 5 C -0.179 4.179 6 C -0.095 4.095 7 H 0.097 0.903 8 C -0.065 4.065 9 N -0.312 5.312 10 C 0.064 3.936 11 C -0.650 4.650 12 H 0.076 0.924 13 C -0.235 4.235 14 N -0.574 5.574 15 Si 0.948 3.052 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.189 4.189 20 C -0.014 4.014 21 O -0.308 6.308 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.154 0.846 32 H 0.013 0.987 33 H -0.029 1.029 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.243 1.409 3.270 18.587 hybrid contribution -0.548 1.386 0.754 1.670 sum -18.791 2.795 4.024 19.419 Atomic orbital electron populations 1.21675 0.94484 1.01837 1.02174 1.22186 0.97455 0.96731 1.03164 1.22300 0.92809 0.93939 0.87449 0.86863 1.22204 0.96407 1.01096 0.98153 1.21129 0.92499 1.00331 0.95553 0.90299 1.22022 0.95316 0.94323 0.94871 1.60492 1.07089 1.57531 1.06098 1.19384 0.85440 0.92655 0.96118 1.22395 0.94633 1.34768 1.13232 0.92443 1.27548 0.94379 0.97837 1.03710 1.70903 1.38235 1.32568 1.15669 0.82806 0.75406 0.74909 0.72078 1.19757 1.20725 1.19171 1.22226 0.97676 1.00701 0.98250 1.22595 0.91844 0.98619 0.88342 1.87937 1.74685 1.53881 1.14289 0.92226 0.92036 0.92980 0.91833 0.90256 0.89967 0.91741 0.92465 0.97031 0.84585 0.98698 1.02874 0.93787 0.92299 0.91048 0.87806 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.81 71.98 0.71 -1.56 16 2 C -0.16 -2.84 4.74 30.59 0.15 -2.70 16 3 C 0.09 1.84 3.29 30.62 0.10 1.94 16 4 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 5 C -0.14 -3.19 4.93 30.69 0.15 -3.04 16 6 C -0.08 -2.11 2.18 -10.67 -0.02 -2.13 16 7 H 0.08 2.23 6.74 -2.39 -0.02 2.22 16 8 C 0.06 2.32 5.15 86.30 0.44 2.76 16 9 N -0.68 -30.08 6.49 -517.92 -3.36 -33.44 16 10 C 0.19 10.55 4.75 85.56 0.41 10.96 16 11 C -0.61 -35.92 9.32 25.60 0.24 -35.68 16 12 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 13 C -0.04 -2.20 5.46 84.65 0.46 -1.74 16 14 N -0.94 -58.98 13.65 21.45 0.29 -58.69 16 15 Si 1.13 50.70 29.90 68.60 2.05 52.75 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 19 C -0.15 -3.88 5.11 30.68 0.16 -3.72 16 20 C 0.06 1.35 6.52 72.01 0.47 1.82 16 21 O -0.39 -9.02 10.13 -148.98 -1.51 -10.53 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.89 7.82 -2.39 -0.02 0.87 16 25 H 0.06 1.28 4.98 -2.39 -0.01 1.26 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 2.11 8.14 -2.38 -0.02 2.10 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.34 14.12 7.05 -89.70 -0.63 13.48 16 32 H -0.01 -0.29 8.01 -2.39 -0.02 -0.31 16 33 H -0.05 -2.69 8.01 -2.39 -0.02 -2.71 16 34 H 0.25 16.21 7.22 -92.71 -0.67 15.54 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.92 6.84 -2.39 -0.02 1.91 16 37 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.24 6.24 -2.38 -0.01 1.22 16 Total: -1.00 -66.27 294.89 1.22 -65.06 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.49 Total: 17.95 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 3.26 Total: -33.10 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -3.07 Total: -92.13 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.51 Total: -10.53 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -66.27 1.22 -65.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308739193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.898 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds