Wall clock time and date at job start Mon Mar 30 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46614 * 2 1 4 4 H 1.09007 * 109.46797 * 177.95549 * 3 2 1 5 5 C 1.50702 * 109.47310 * 57.95701 * 3 2 1 6 6 H 1.07995 * 120.00182 * 239.99734 * 5 3 2 7 7 C 1.37878 * 119.99617 * 59.99910 * 5 3 2 8 8 N 1.31510 * 120.00692 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47058 * 59.99878 * 9 7 5 11 11 H 1.48492 * 109.47387 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47096 * 300.00201 * 9 7 5 13 13 N 1.46897 * 109.47229 * 297.95392 * 3 2 1 14 14 C 1.46895 * 111.00073 * 273.78463 * 13 3 2 15 15 C 1.53005 * 109.46872 * 174.61367 * 14 13 3 16 16 H 1.09000 * 109.47044 * 304.99154 * 15 14 13 17 17 O 1.42894 * 109.47509 * 64.99535 * 15 14 13 18 18 C 1.53007 * 109.46795 * 184.99929 * 15 14 13 19 19 C 1.53781 * 113.61182 * 279.13210 * 18 15 14 20 20 C 1.53951 * 87.01968 * 220.05321 * 19 18 15 21 21 C 1.53775 * 87.11093 * 25.36179 * 20 19 18 22 22 H 1.09000 * 109.47363 * 294.45486 * 1 2 3 23 23 H 1.09000 * 109.46794 * 174.45726 * 1 2 3 24 24 H 1.08999 * 109.47583 * 54.45749 * 1 2 3 25 25 H 1.08998 * 109.46844 * 119.99595 * 2 1 3 26 26 H 1.08992 * 109.47214 * 240.00148 * 2 1 3 27 27 H 0.96993 * 120.00400 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99821 * 149.82231 * 13 3 2 29 29 H 1.09005 * 109.47061 * 294.60637 * 14 13 3 30 30 H 1.08997 * 109.47274 * 54.61152 * 14 13 3 31 31 H 0.96705 * 113.99856 * 59.99774 * 17 15 14 32 32 H 1.08993 * 112.85027 * 50.32952 * 18 15 14 33 33 H 1.09000 * 113.61492 * 334.56813 * 19 18 15 34 34 H 1.08996 * 113.61228 * 105.47276 * 19 18 15 35 35 H 1.09003 * 113.53532 * 270.81266 * 20 19 18 36 36 H 1.08994 * 113.74453 * 139.94599 * 20 19 18 37 37 H 1.09004 * 113.61674 * 220.09000 * 21 20 19 38 38 H 1.08998 * 113.61542 * 89.19417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0367 5 6 1.4966 2.1675 1.2044 6 1 0.8795 3.0441 1.0740 7 6 1.7874 1.7114 2.4726 8 7 2.5384 0.6435 2.6314 9 14 1.1145 2.6103 3.9655 10 1 -0.3696 2.6105 3.9158 11 1 1.5677 1.9245 5.2022 12 1 1.6100 4.0102 3.9653 13 7 1.5910 2.1206 -1.2234 14 6 2.5280 1.8851 -2.3299 15 6 1.9616 2.4913 -3.6155 16 1 0.9645 2.0905 -3.7976 17 8 1.8866 3.9118 -3.4795 18 6 2.8754 2.1390 -4.7911 19 6 4.1130 3.0451 -4.9023 20 6 3.8949 3.0200 -6.4261 21 6 2.4128 2.7352 -6.1310 22 1 -0.3634 0.4254 0.9355 23 1 -0.3633 -1.0229 -0.0993 24 1 -0.3634 0.5974 -0.8362 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.7426 0.3225 3.5236 28 1 1.4619 3.1084 -1.0627 29 1 3.4862 2.3510 -2.1000 30 1 2.6684 0.8127 -2.4650 31 1 2.7395 4.3368 -3.3152 32 1 3.1070 1.0753 -4.8431 33 1 3.9741 4.0305 -4.4576 34 1 5.0373 2.5626 -4.5846 35 1 4.4066 2.1973 -6.9256 36 1 4.0668 3.9815 -6.9099 37 1 1.9665 2.0029 -6.8038 38 1 1.8082 3.6356 -6.0228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315723667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:35 Heat of formation + Delta-G solvation = -46.022986 kcal Electronic energy + Delta-G solvation = -16383.922678 eV Core-core repulsion = 13840.357765 eV Total energy + Delta-G solvation = -2543.564913 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.55787 -36.48002 -35.27284 -32.49177 -30.75122 -28.75744 -26.20438 -25.67612 -23.91942 -22.98495 -21.28423 -19.29091 -18.88516 -16.79249 -16.39690 -15.75229 -15.13585 -14.76978 -14.25745 -13.70476 -13.40435 -12.99318 -12.86420 -12.43111 -12.15690 -11.90780 -11.78471 -11.28640 -11.14702 -10.90260 -10.79743 -10.65795 -10.51104 -10.35296 -10.12272 -10.06570 -9.82739 -9.40655 -9.19935 -8.73974 -8.43802 -7.17153 -5.99209 -4.04327 3.32773 3.37227 3.40390 4.41261 4.54378 4.58739 4.68998 4.74970 4.84961 5.22165 5.32362 5.59432 5.63373 5.70196 5.73731 5.78212 5.85271 5.91734 5.95907 6.19120 6.28972 6.46278 6.54852 6.57779 6.74338 6.88850 7.26260 7.34974 7.53734 7.77335 7.83154 7.86130 7.92437 8.30485 8.44678 8.73431 9.06019 9.60354 11.06835 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043933 B = 0.005748 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.176156 B = 4870.463592 C = 5055.537111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.215 3.785 4 H -0.003 1.003 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.034 3.966 15 C 0.118 3.882 16 H 0.104 0.896 17 O -0.558 6.558 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.141 4.141 21 C -0.132 4.132 22 H 0.051 0.949 23 H 0.012 0.988 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.008 0.992 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.018 0.982 30 H 0.068 0.932 31 H 0.365 0.635 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 2.804 -13.682 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.015 0.985 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.097 4.097 15 C 0.059 3.941 16 H 0.122 0.878 17 O -0.364 6.364 18 C -0.162 4.162 19 C -0.178 4.178 20 C -0.179 4.179 21 C -0.170 4.170 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.066 0.934 25 H 0.103 0.897 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.036 0.964 30 H 0.087 0.913 31 H 0.213 0.787 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.310 2.052 -13.803 14.016 hybrid contribution 1.115 0.898 1.260 1.907 sum 2.425 2.950 -12.543 13.112 Atomic orbital electron populations 1.21439 0.97499 0.97068 1.01635 1.21420 0.95115 0.98295 0.99151 1.19116 0.93098 0.91637 0.85397 0.98488 1.21166 1.31557 1.11927 0.90384 0.92365 1.24883 0.95101 0.95026 0.98835 1.69876 1.37495 1.23138 1.22418 0.86637 0.79478 0.79726 0.82029 1.20197 1.21381 1.20401 1.60592 1.46920 1.16687 1.07162 1.22518 0.93986 1.00463 0.92710 1.21896 0.99591 0.80476 0.92133 0.87813 1.86594 1.35362 1.19884 1.94557 1.23273 0.96755 1.00068 0.96095 1.22941 0.98121 1.00226 0.96509 1.22799 0.97220 1.01487 0.96352 1.22892 0.96259 1.01362 0.96457 0.92955 0.96915 0.93407 0.89740 0.97318 0.92963 0.84687 0.96433 0.91326 0.78703 0.88749 0.90034 0.91537 0.90560 0.91758 0.91935 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.46 37.16 0.35 -2.39 16 2 C -0.10 -2.49 5.58 -26.73 -0.15 -2.64 16 3 C 0.22 5.41 2.30 -68.86 -0.16 5.25 16 4 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 5 C -0.51 -13.90 7.33 -34.44 -0.25 -14.15 16 6 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.36 11.34 55.43 0.63 -24.73 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -14.54 5.51 -107.95 -0.59 -15.13 16 14 C 0.03 0.60 5.10 -3.82 -0.02 0.58 16 15 C 0.12 1.72 3.27 -26.72 -0.09 1.64 16 16 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 17 O -0.56 -8.21 12.19 -35.23 -0.43 -8.64 16 18 C -0.14 -1.69 3.58 -89.81 -0.32 -2.01 16 19 C -0.14 -1.49 7.42 -25.83 -0.19 -1.68 16 20 C -0.14 -1.35 8.09 -25.83 -0.21 -1.56 16 21 C -0.13 -1.41 7.54 -25.92 -0.20 -1.61 16 22 H 0.05 1.29 7.37 -51.93 -0.38 0.91 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.05 1.07 7.50 -51.93 -0.39 0.68 16 25 H 0.08 2.30 6.13 -51.93 -0.32 1.98 16 26 H 0.01 0.19 7.43 -51.93 -0.39 -0.20 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.34 7.25 7.89 -39.29 -0.31 6.94 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 1.24 7.39 -51.93 -0.38 0.86 16 31 H 0.36 4.44 6.82 45.56 0.31 4.75 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.08 0.83 5.92 -51.93 -0.31 0.52 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.00 7.72 -51.93 -0.40 0.60 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -28.27 297.90 -8.14 -36.41 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.89 Total: 8.22 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.33 Total: -16.94 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.03 Total: -39.86 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.43 Total: -8.64 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.27 -8.14 -36.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315723667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.611 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds